View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1575_low_3 (Length: 354)
Name: NF1575_low_3
Description: NF1575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1575_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 29 - 347
Target Start/End: Original strand, 503154 - 503473
Alignment:
| Q |
29 |
tatcgttacgaaaaacctcaacgaaaccttaaaagactggataatgataatctaaatatccttcccctcctacttttatattcagctcaaaatttgcatg |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
503154 |
tatcgttacgaaaaacctcaacgaaaccttaaaagactggataatgataatctaa---tccttcccctcctacttttatattcagctcaaaatttgcatg |
503250 |
T |
|
| Q |
129 |
caaa----atgggccaacttcctgttgtcttcttcgtttattagtttaagggtttcacattttaatgtcgtcattatgttaatatattaatagtattctg |
224 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
503251 |
caaataaaatgggccaacttcctgttgtcttcttcgtttattagtttaagggtttcacattttaatgtcgtcattatgttaatatattaatagtattctg |
503350 |
T |
|
| Q |
225 |
accagaaagggttgcagaggagcctctccaggaaaggatctcagcgttgggtcgacaggaaagtgaatggcctttcaatgattcaagttcatgatattaa |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
503351 |
accagaaagggttgcagaggagcctctccaggaaaggatctcagcgtggggtcgacaggaaagtgaatggcctttcaatgcttcaagttcatgatattaa |
503450 |
T |
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| Q |
325 |
taataaggatgccatctctgctc |
347 |
Q |
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||||||||||||||||||||||| |
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| T |
503451 |
taataaggatgccatctctgctc |
503473 |
T |
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