View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1575_low_4 (Length: 341)
Name: NF1575_low_4
Description: NF1575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1575_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 39 - 328
Target Start/End: Original strand, 37509603 - 37509891
Alignment:
| Q |
39 |
aagtccaccataatattagtgctcatgattaagatgttgatccaaccaatgtcaaatcaacaaatatacaagaaaaatcactattgacatcttgaaactc |
138 |
Q |
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| T |
37509603 |
aagtccaccataatattagtgctcatgattaagatgttgatc-aaccaatgtcaaatcaataaatatacaagaaaaatcagtattgacatcttgaaactc |
37509701 |
T |
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| Q |
139 |
aatttttattggtgttctcttgtttttgtcgagttaatatggattagatcaatgtattactcccaatttctattaaaaggcatcgacgcgacgacgttga |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37509702 |
aatttttattggtgttctcttgtttttgtcgagttaatatggattagatcaatgtattactcccaatttctattaaaaggcatcgatgcgacgacgttga |
37509801 |
T |
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| Q |
239 |
tggtcattaacattttgagtgattcataaactccatggaacacttttagcactaaacaattaattgtcttctgcgtatgtgatgttacct |
328 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37509802 |
tggtcattaacattttgagtgattcgtaaactccatggaacacttttagcactgaacaattaattgtcttctgcgtatgtgatgttacct |
37509891 |
T |
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