View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1575_low_5 (Length: 335)

Name: NF1575_low_5
Description: NF1575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1575_low_5
NF1575_low_5
[»] chr1 (29 HSPs)
chr1 (48-330)||(42440837-42441120)
chr1 (1-48)||(14387141-14387187)
chr1 (1-46)||(4299521-4299565)
chr1 (1-46)||(25297973-25298017)
chr1 (1-46)||(47940697-47940741)
chr1 (1-49)||(9978178-9978225)
chr1 (1-61)||(42561421-42561480)
chr1 (1-52)||(49285101-49285151)
chr1 (1-51)||(1387904-1387953)
chr1 (1-46)||(5189470-5189514)
chr1 (1-46)||(19797107-19797151)
chr1 (1-46)||(27240925-27240969)
chr1 (1-46)||(27928424-27928468)
chr1 (1-54)||(51276821-51276873)
chr1 (1-45)||(50162665-50162708)
chr1 (3-51)||(51789593-51789640)
chr1 (1-52)||(47940565-47940615)
chr1 (3-46)||(50162539-50162581)
chr1 (1-46)||(2854658-2854702)
chr1 (1-46)||(3607855-3607899)
chr1 (1-46)||(15324627-15324671)
chr1 (1-46)||(19955037-19955081)
chr1 (1-46)||(21930504-21930548)
chr1 (1-46)||(23698628-23698672)
chr1 (1-46)||(27926378-27926422)
chr1 (1-46)||(36880637-36880681)
chr1 (13-46)||(40647255-40647288)
chr1 (1-46)||(48954340-48954384)
chr1 (1-46)||(50627132-50627176)
[»] chr6 (17 HSPs)
chr6 (1-60)||(15546619-15546677)
chr6 (1-51)||(21380067-21380116)
chr6 (1-46)||(885386-885430)
chr6 (1-46)||(4890481-4890525)
chr6 (13-46)||(7808610-7808643)
chr6 (1-46)||(7808735-7808779)
chr6 (1-46)||(15546758-15546802)
chr6 (13-46)||(18998118-18998151)
chr6 (1-46)||(20501707-20501751)
chr6 (1-46)||(21379942-21379986)
chr6 (18-57)||(5416656-5416695)
chr6 (13-46)||(885522-885555)
chr6 (1-46)||(4890607-4890651)
chr6 (1-46)||(8091188-8091232)
chr6 (1-46)||(11687144-11687188)
chr6 (1-46)||(11687269-11687313)
chr6 (1-46)||(14393690-14393734)
[»] chr2 (20 HSPs)
chr2 (1-55)||(24101824-24101877)
chr2 (1-46)||(1924107-1924151)
chr2 (1-46)||(45408626-45408670)
chr2 (13-47)||(10553018-10553052)
chr2 (1-46)||(2818792-2818836)
chr2 (1-46)||(16705734-16705778)
chr2 (13-46)||(22269723-22269756)
chr2 (1-46)||(34455886-34455930)
chr2 (1-46)||(34490457-34490501)
chr2 (1-46)||(34490582-34490626)
chr2 (1-46)||(45408751-45408795)
chr2 (1-53)||(6605860-6605911)
chr2 (1-57)||(43858560-43858615)
chr2 (1-51)||(1923976-1924025)
chr2 (13-46)||(7737202-7737235)
chr2 (1-46)||(9281473-9281517)
chr2 (1-46)||(20892885-20892929)
chr2 (1-46)||(23835877-23835921)
chr2 (1-46)||(24101958-24102002)
chr2 (1-46)||(43476072-43476116)
[»] chr8 (12 HSPs)
chr8 (1-46)||(38629600-38629644)
chr8 (1-46)||(15882201-15882245)
chr8 (1-46)||(15882327-15882371)
chr8 (1-46)||(24211404-24211448)
chr8 (1-46)||(37114239-37114283)
chr8 (1-45)||(40891139-40891182)
chr8 (1-51)||(24211274-24211323)
chr8 (1-43)||(24741827-24741868)
chr8 (13-46)||(8210324-8210357)
chr8 (1-46)||(17426629-17426673)
chr8 (1-46)||(33100646-33100690)
chr8 (18-46)||(4036571-4036599)
[»] chr4 (21 HSPs)
chr4 (1-46)||(42274619-42274663)
chr4 (1-48)||(18417656-18417702)
chr4 (1-51)||(55107650-55107699)
chr4 (1-46)||(530670-530714)
chr4 (1-46)||(530795-530839)
chr4 (1-46)||(1298913-1298957)
chr4 (1-46)||(18417783-18417827)
chr4 (1-46)||(24915795-24915839)
chr4 (1-46)||(52824240-52824284)
chr4 (1-51)||(4688243-4688292)
chr4 (1-51)||(42274488-42274537)
chr4 (13-46)||(1299049-1299082)
chr4 (1-46)||(4688374-4688418)
chr4 (1-46)||(20435266-20435310)
chr4 (13-46)||(24969681-24969714)
chr4 (1-46)||(27434736-27434780)
chr4 (1-46)||(32318721-32318765)
chr4 (3-43)||(3422557-3422596)
chr4 (1-42)||(24294593-24294636)
chr4 (1-45)||(24969543-24969586)
chr4 (19-51)||(43486196-43486228)
[»] chr3 (42 HSPs)
chr3 (1-46)||(4072400-4072444)
chr3 (1-46)||(12789607-12789651)
chr3 (1-45)||(32237396-32237439)
chr3 (1-51)||(21969153-21969202)
chr3 (1-51)||(21991589-21991638)
chr3 (1-46)||(21969283-21969327)
chr3 (1-46)||(21991719-21991763)
chr3 (1-46)||(25488467-25488511)
chr3 (1-46)||(25561012-25561056)
chr3 (1-46)||(32237520-32237564)
chr3 (1-46)||(38125305-38125349)
chr3 (1-46)||(39850345-39850389)
chr3 (1-46)||(45487800-45487844)
chr3 (1-46)||(45487925-45487969)
chr3 (1-46)||(50099560-50099604)
chr3 (1-44)||(45713029-45713071)
chr3 (1-43)||(8831744-8831785)
chr3 (13-51)||(10017110-10017148)
chr3 (13-51)||(10254564-10254602)
chr3 (13-51)||(10441395-10441433)
chr3 (1-51)||(35368545-35368594)
chr3 (12-46)||(45712904-45712938)
chr3 (13-54)||(1476688-1476729)
chr3 (1-46)||(3970492-3970536)
chr3 (1-46)||(4072274-4072318)
chr3 (1-46)||(5529892-5529936)
chr3 (1-46)||(10017235-10017279)
chr3 (1-46)||(10117637-10117681)
chr3 (1-46)||(10254695-10254739)
chr3 (1-46)||(13078164-13078208)
chr3 (1-46)||(13723989-13724033)
chr3 (1-46)||(22176235-22176279)
chr3 (1-46)||(26906455-26906499)
chr3 (1-46)||(36278882-36278926)
chr3 (1-46)||(36657434-36657478)
chr3 (1-46)||(36657559-36657603)
chr3 (1-46)||(36822761-36822805)
chr3 (13-46)||(39850482-39850515)
chr3 (3-40)||(44611509-44611545)
chr3 (1-45)||(12838079-12838122)
chr3 (3-43)||(26976970-26977009)
chr3 (13-45)||(43639219-43639251)
[»] scaffold0122 (2 HSPs)
scaffold0122 (1-52)||(45829-45879)
scaffold0122 (13-46)||(45971-46004)
[»] chr7 (21 HSPs)
chr7 (1-52)||(31231742-31231792)
chr7 (1-46)||(10936596-10936640)
chr7 (1-46)||(24836146-24836190)
chr7 (1-46)||(31231615-31231659)
chr7 (1-46)||(33721828-33721872)
chr7 (1-46)||(34052405-34052449)
chr7 (1-46)||(35339279-35339323)
chr7 (1-46)||(38528538-38528582)
chr7 (1-46)||(39143832-39143876)
chr7 (3-46)||(35665744-35665786)
chr7 (1-46)||(17101655-17101699)
chr7 (1-46)||(17101700-17101744)
chr7 (13-46)||(20184239-20184272)
chr7 (1-46)||(24836021-24836065)
chr7 (1-46)||(30259192-30259236)
chr7 (13-46)||(30594694-30594727)
chr7 (1-46)||(34052280-34052324)
chr7 (1-46)||(35665634-35665678)
chr7 (1-46)||(38883222-38883266)
chr7 (1-46)||(38883347-38883391)
chr7 (13-46)||(48103369-48103402)
[»] chr5 (17 HSPs)
chr5 (1-43)||(32623219-32623260)
chr5 (1-46)||(4265983-4266027)
chr5 (1-46)||(4266108-4266152)
chr5 (1-46)||(20476557-20476601)
chr5 (1-45)||(24397372-24397415)
chr5 (1-53)||(35420606-35420657)
chr5 (13-44)||(12744963-12744994)
chr5 (1-43)||(8364756-8364797)
chr5 (1-51)||(15855839-15855888)
chr5 (1-51)||(29141801-29141850)
chr5 (4-46)||(43539236-43539277)
chr5 (1-46)||(2268173-2268217)
chr5 (13-46)||(13754292-13754325)
chr5 (1-46)||(15855969-15856013)
chr5 (1-46)||(16473081-16473125)
chr5 (1-46)||(35420738-35420782)
chr5 (3-55)||(17583367-17583418)
[»] scaffold0069 (2 HSPs)
scaffold0069 (3-46)||(26406-26448)
scaffold0069 (12-46)||(26457-26491)
[»] scaffold0163 (1 HSPs)
scaffold0163 (12-46)||(2076-2110)
[»] scaffold0107 (1 HSPs)
scaffold0107 (1-51)||(51059-51108)
[»] scaffold0188 (1 HSPs)
scaffold0188 (13-46)||(7087-7120)
[»] scaffold0118 (1 HSPs)
scaffold0118 (13-46)||(14443-14476)
[»] scaffold0137 (1 HSPs)
scaffold0137 (1-45)||(10118-10161)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 48 - 330
Target Start/End: Complemental strand, 42441120 - 42440837
Alignment:
Q  48 ttttattaatactatataaacactaatttctacgnnnnnnnntcgtagtagacttcctaaaataaaaaatatatctagtagatatacatattagaggctg 147  Q
    |||| ||||||||||| ||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42441120 tttttttaatactatacaaacactaatttctacaaaaaaaaatcgtagtagacttcctaaaataaaaaatatatctagtagatatacatattagaggctg 42441021  T
Q  148 tctactttttaattaaaactttatggacttaacataatnnnnnnnnnnnnnnnc-tttatgagcatattttccctcggtaatataatttccttcaactcc 246  Q
    ||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||    
T  42441020 tctactttttaattaaaactttatggacttaacataataataaaaaaaataaaaatttatgagcatattttccctcggtaatataatttccttcaactcc 42440921  T
Q  247 aagcaaggggtcattcataatctttccaacaaacaagcattatgatacaccgccggagaatatagaacctggctctgtgctcct 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42440920 aagcaaggggtcattcataatctttccaacaaacaagcattatgatacactgccggagaatatagaacctggctctgtgctcct 42440837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 14387141 - 14387187
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcat 48  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14387141 agaaccatacgaaaa-acacctaaggaattgtacctaagttttctcat 14387187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4299521 - 4299565
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  4299521 agaaccatacgaaaa-acacctaaggaattgtacctaagttttctc 4299565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25297973 - 25298017
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  25297973 agaaccatacgaaaa-acacctaaggaattgtacctaagttttctc 25298017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 47940697 - 47940741
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  47940697 agaaccatacgaaaa-acacctaaggaattgtacctaagttttctc 47940741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 9978178 - 9978225
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcatt 49  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||    
T  9978178 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctcatt 9978225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 42561421 - 42561480
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcattttattaatacta 61  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||| |||| || ||||||    
T  42561421 agaaccatac-aaaaagcacctaaggaattgtacctaagttttctccttttctttatacta 42561480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 49285101 - 49285151
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcatttta 52  Q
    |||||||||||||||  ||||||||||||||||||||||||||||| |||||    
T  49285101 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctcctttta 49285151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 1387904 - 1387953
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcatttt 51  Q
    |||||||||||||||  ||||||||||||||||||||| ||||||||||||    
T  1387904 agaaccatacgaaaag-cacctaaggaattgtacctaaattttctcatttt 1387953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 5189514 - 5189470
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  5189514 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 5189470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 19797107 - 19797151
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  19797107 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 19797151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 27240969 - 27240925
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  27240969 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 27240925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 27928424 - 27928468
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||    
T  27928424 agaaccatacgaaaa-acacctaaggaattgtacataagttttctc 27928468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 51276821 - 51276873
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcattttatt 54  Q
    |||||||||||||||  |||||||| |||||||||||||||||||| |||||||    
T  51276821 agaaccatacgaaaag-cacctaagaaattgtacctaagttttctctttttatt 51276873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 50162665 - 50162708
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttct 45  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||    
T  50162665 agaaccatac-aaaaagcacctaaggaattgtacctaagttttct 50162708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 51789640 - 51789593
Alignment:
Q  3 aaccatacgaaaaaacacctaaggaattgtacctaagttttctcatttt 51  Q
    |||||||||||||  ||||||||||||||||||||||||||||| ||||    
T  51789640 aaccatacgaaaat-cacctaaggaattgtacctaagttttctcctttt 51789593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 47940615 - 47940565
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcatttta 52  Q
    |||||||||||||||  |||||||| |||||||||||||||||||| |||||    
T  47940615 agaaccatacgaaaag-cacctaagaaattgtacctaagttttctcctttta 47940565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 50162581 - 50162539
Alignment:
Q  3 aaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||| |||||| ||||||||||||||||||||||||||||    
T  50162581 aaccatac-aaaaaatacctaaggaattgtacctaagttttctc 50162539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2854658 - 2854702
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||   ||||||||||||||||||||||||||||    
T  2854658 agaaccatacgaaaagg-acctaaggaattgtacctaagttttctc 2854702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 3607855 - 3607899
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||    
T  3607855 agaaccatacgaaaag-cacctaagaaattgtacctaagttttctc 3607899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 15324671 - 15324627
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||    
T  15324671 agaaccatacgaaaag-cacctaagaaattgtacctaagttttctc 15324627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 19955037 - 19955081
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||| |||||  ||||||||||||||||||||||||||||    
T  19955037 agaaccatac-aaaaagtacctaaggaattgtacctaagttttctc 19955081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21930504 - 21930548
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    ||||||||||||||| ||||||||| |||||||||||| |||||||    
T  21930504 agaaccatacgaaaa-acacctaagtaattgtacctaaattttctc 21930548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 23698628 - 23698672
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||   ||||||||||||||||||||||||||||    
T  23698628 agaaccatacgaaaagg-acctaaggaattgtacctaagttttctc 23698672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 27926378 - 27926422
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  ||||||||||||||||| |||||||||||    
T  27926378 agaaccatacgaaaag-cacctaaggaattgtacataagttttctc 27926422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 36880637 - 36880681
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  || ||||||||||||||||||||||||||    
T  36880637 agaaccatacgaaaag-catctaaggaattgtacctaagttttctc 36880681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 40647255 - 40647288
Alignment:
Q  13 aaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||| |||||||||||||||||||||||||||||    
T  40647255 aaaagcacctaaggaattgtacctaagttttctc 40647288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 48954340 - 48954384
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||   ||||||||||||||||||||||||||||    
T  48954340 agaaccatacgaaaagg-acctaaggaattgtacctaagttttctc 48954384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 50627176 - 50627132
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  || ||||||||||||||||||||||||||    
T  50627176 agaaccatacgaaaag-catctaaggaattgtacctaagttttctc 50627132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 15546677 - 15546619
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcattttattaatact 60  Q
    |||||||||| |||||||| |||||||||||||||||||||||||| |||||| ||||||    
T  15546677 agaaccatac-aaaaaacaactaaggaattgtacctaagttttctccttttataaatact 15546619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 21380067 - 21380116
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcatttt 51  Q
    |||||||||||||||  ||||||||||||||||||||||||||||| ||||    
T  21380067 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctcctttt 21380116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 885430 - 885386
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||    
T  885430 agaaccatac-aaaaagcacctaaggaattgtacctaagttttctc 885386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4890525 - 4890481
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||    
T  4890525 agaaccatacgaaaaa-cacctaagaaattgtacctaagttttctc 4890481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 7808643 - 7808610
Alignment:
Q  13 aaaaacacctaaggaattgtacctaagttttctc 46  Q
    ||||||||||||||||||||||||||||||||||    
T  7808643 aaaaacacctaaggaattgtacctaagttttctc 7808610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 7808735 - 7808779
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  7808735 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 7808779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 15546758 - 15546802
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  15546758 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 15546802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 18998151 - 18998118
Alignment:
Q  13 aaaaacacctaaggaattgtacctaagttttctc 46  Q
    ||||||||||||||||||||||||||||||||||    
T  18998151 aaaaacacctaaggaattgtacctaagttttctc 18998118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 20501751 - 20501707
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||    
T  20501751 agaaccatacgaaaaa-cacctaaggaattgtaactaagttttctc 20501707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 21379986 - 21379942
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  21379986 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 21379942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 5416656 - 5416695
Alignment:
Q  18 cacctaaggaattgtacctaagttttctcattttattaat 57  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  5416656 cacctaaggaattgtacctaagttttctcctttttttaat 5416695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 885522 - 885555
Alignment:
Q  13 aaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||| |||||||||||||||||||||||||||||    
T  885522 aaaagcacctaaggaattgtacctaagttttctc 885555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4890607 - 4890651
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  ||||||||||||||||||||| |||||||    
T  4890607 agaaccatacgaaaag-cacctaaggaattgtacctaaattttctc 4890651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8091188 - 8091232
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||    
T  8091188 agaaccatacgaaaag-cacctaagcaattgtacctaagttttctc 8091232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 11687188 - 11687144
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  || ||||||||||||||||||||||||||    
T  11687188 agaaccatacgaaaag-catctaaggaattgtacctaagttttctc 11687144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 11687269 - 11687313
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  || ||||||||||||||||||||||||||    
T  11687269 agaaccatacgaaaag-catctaaggaattgtacctaagttttctc 11687313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14393690 - 14393734
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||| ||||| ||||||||||||| |||||||||||||||    
T  14393690 agaaccatac-aaaaagcacctaaggaattatacctaagttttctc 14393734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 24101877 - 24101824
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcattttatta 55  Q
    |||||||||||||||  ||||||||||||||||||||||||||||| ||||||||    
T  24101877 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctccttttatta 24101824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 1924107 - 1924151
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  1924107 agaaccatacgaaaa-acacctaaggaattgtacctaagttttctc 1924151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 45408670 - 45408626
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  45408670 agaaccatac-aaaaaacacctaaggaattgtacctaagttttctc 45408626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 10553018 - 10553052
Alignment:
Q  13 aaaaacacctaaggaattgtacctaagttttctca 47  Q
    |||||||||||||||||||||||||||||||||||    
T  10553018 aaaaacacctaaggaattgtacctaagttttctca 10553052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2818792 - 2818836
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||    
T  2818792 agaaccatacgaaaa-acacctaaagaattgtacctaagttttctc 2818836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16705778 - 16705734
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  16705778 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 16705734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 22269756 - 22269723
Alignment:
Q  13 aaaaacacctaaggaattgtacctaagttttctc 46  Q
    ||||||||||||||||||||||||||||||||||    
T  22269756 aaaaacacctaaggaattgtacctaagttttctc 22269723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 34455930 - 34455886
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  34455930 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 34455886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 34490501 - 34490457
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||    
T  34490501 agaaccatacgaaaaa-cacctaaagaattgtacctaagttttctc 34490457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 34490582 - 34490626
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  34490582 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 34490626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 45408751 - 45408795
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  45408751 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 45408795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6605860 - 6605911
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcattttat 53  Q
    |||||||||| ||||| ||||||| ||||||||||||||||||||| ||||||    
T  6605860 agaaccatac-aaaaagcacctaaagaattgtacctaagttttctccttttat 6605911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 43858560 - 43858615
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcattttattaat 57  Q
    |||||||||||||||   |||||||||||||||||||| ||||||| ||||||||||    
T  43858560 agaaccatacgaaaagt-acctaaggaattgtacctaaattttctccttttattaat 43858615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1924025 - 1923976
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcatttt 51  Q
    |||||||||||||||  |||||||| |||||||||||||||||||| ||||    
T  1924025 agaaccatacgaaaag-cacctaagaaattgtacctaagttttctcctttt 1923976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 7737202 - 7737235
Alignment:
Q  13 aaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||| |||||||||||||||||||||||||||||    
T  7737202 aaaagcacctaaggaattgtacctaagttttctc 7737235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9281473 - 9281517
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||   ||||||||||||||||||||||||||||    
T  9281473 agaaccatacgaaaagg-acctaaggaattgtacctaagttttctc 9281517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 20892929 - 20892885
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||    
T  20892929 agaaccatacgaaaag-cacctaagaaattgtacctaagttttctc 20892885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 23835921 - 23835877
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  ||||||||||||||||| |||||||||||    
T  23835921 agaaccatacgaaaag-cacctaaggaattgtacataagttttctc 23835877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24101958 - 24102002
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  ||||||||||||||||| |||||||||||    
T  24101958 agaaccatacgaaaag-cacctaaggaattgtacttaagttttctc 24102002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 43476072 - 43476116
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    ||||||||||||||| |||||||||||||| ||||||| |||||||    
T  43476072 agaaccatacgaaaa-acacctaaggaattatacctaaattttctc 43476116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38629600 - 38629644
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  38629600 agaaccatacgaaaa-acacctaaggaattgtacctaagttttctc 38629644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 15882245 - 15882201
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||    
T  15882245 agaaccatac-aaaaagcacctaaggaattgtacctaagttttctc 15882201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 15882327 - 15882371
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  15882327 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 15882371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24211404 - 24211448
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  24211404 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 24211448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37114283 - 37114239
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  37114283 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 37114239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40891139 - 40891182
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttct 45  Q
    |||||||||||||||  ||||||||||||||||||||||||||||    
T  40891139 agaaccatacgaaaag-cacctaaggaattgtacctaagttttct 40891182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 24211323 - 24211274
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcatttt 51  Q
    |||||||||||||||  ||||||| ||||||||||||||||||||| ||||    
T  24211323 agaaccatacgaaaag-cacctaaagaattgtacctaagttttctcctttt 24211274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 24741868 - 24741827
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagtttt 43  Q
    |||||||||||||||  ||||||||||||||||||||||||||    
T  24741868 agaaccatacgaaaag-cacctaaggaattgtacctaagtttt 24741827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 8210357 - 8210324
Alignment:
Q  13 aaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||| |||||||||||||||||||||||||||||    
T  8210357 aaaagcacctaaggaattgtacctaagttttctc 8210324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17426673 - 17426629
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  ||||||| |||||||||||||||||||||    
T  17426673 agaaccatacgaaaag-cacctaatgaattgtacctaagttttctc 17426629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 33100690 - 33100646
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||    
T  33100690 agaaccatacgaaaag-cacctaagaaattgtacctaagttttctc 33100646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 4036571 - 4036599
Alignment:
Q  18 cacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||||||||||||||||    
T  4036571 cacctaaggaattgtacctaagttttctc 4036599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 42274619 - 42274663
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  42274619 agaaccatacgaaaa-acacctaaggaattgtacctaagttttctc 42274663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 18417702 - 18417656
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcat 48  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||    
T  18417702 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctcat 18417656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 55107650 - 55107699
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcatttt 51  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||| ||||    
T  55107650 agaaccatac-aaaaagcacctaaggaattgtacctaagttttctcctttt 55107699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 530714 - 530670
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||    
T  530714 agaaccatac-aaaaagcacctaaggaattgtacctaagttttctc 530670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 530795 - 530839
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  530795 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 530839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 1298957 - 1298913
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||    
T  1298957 agaaccatac-aaaaagcacctaaggaattgtacctaagttttctc 1298913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 18417783 - 18417827
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||    
T  18417783 agaaccatac-aaaaagcacctaaggaattgtacctaagttttctc 18417827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 24915839 - 24915795
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  24915839 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 24915795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 52824284 - 52824240
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  52824284 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 52824240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 4688292 - 4688243
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcatttt 51  Q
    |||||||||||||||  |||||||| |||||||||||||||||||| ||||    
T  4688292 agaaccatacgaaaag-cacctaagaaattgtacctaagttttctcttttt 4688243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 42274537 - 42274488
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcatttt 51  Q
    |||||||||||||||  || |||||||||||||||||||||||||| ||||    
T  42274537 agaaccatacgaaaag-catctaaggaattgtacctaagttttctcctttt 42274488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 1299049 - 1299082
Alignment:
Q  13 aaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||| |||||||||||||||||||||||||||||    
T  1299049 aaaagcacctaaggaattgtacctaagttttctc 1299082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4688374 - 4688418
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  || ||||||||||||||||||||||||||    
T  4688374 agaaccatacgaaaat-catctaaggaattgtacctaagttttctc 4688418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 20435266 - 20435310
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  ||||||| |||||||||||||||||||||    
T  20435266 agaaccatacgaaaag-cacctaaagaattgtacctaagttttctc 20435310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 24969681 - 24969714
Alignment:
Q  13 aaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||| |||||||||||||||||||||||||||||    
T  24969681 aaaagcacctaaggaattgtacctaagttttctc 24969714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 27434736 - 27434780
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  ||||||||||||||||| |||||||||||    
T  27434736 agaaccatacgaaaag-cacctaaggaattgtacttaagttttctc 27434780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32318765 - 32318721
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  ||| |||||||||||||||||||||||||    
T  32318765 agaaccatacgaaaag-cacataaggaattgtacctaagttttctc 32318721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 3422557 - 3422596
Alignment:
Q  3 aaccatacgaaaaaacacctaaggaattgtacctaagtttt 43  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  3422557 aaccatacgaaaa-acacctaaagaattgtacctaagtttt 3422596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24294593 - 24294636
Alignment:
Q  1 agaaccatacgaaaaaa--cacctaaggaattgtacctaagttt 42  Q
    ||||||||||||||||   |||||||||||||||||||||||||    
T  24294593 agaaccatacgaaaaacaccacctaaggaattgtacctaagttt 24294636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 24969586 - 24969543
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttct 45  Q
    |||||||||||||||  ||||||| ||||||||||||||||||||    
T  24969586 agaaccatacgaaaag-cacctaaagaattgtacctaagttttct 24969543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 43486228 - 43486196
Alignment:
Q  19 acctaaggaattgtacctaagttttctcatttt 51  Q
    |||||||||||||||||||||||||||| ||||    
T  43486228 acctaaggaattgtacctaagttttctcctttt 43486196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4072400 - 4072444
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  4072400 agaaccatacgaaaa-acacctaaggaattgtacctaagttttctc 4072444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 12789651 - 12789607
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  12789651 agaaccatacgaaaaa-cacctaaggaattgtacctaagttttctc 12789607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32237439 - 32237396
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttct 45  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  32237439 agaaccatacgaaaaa-cacctaaggaattgtacctaagttttct 32237396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 21969202 - 21969153
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcatttt 51  Q
    |||||||||||||||  ||||||||||||||||||||||||||||| ||||    
T  21969202 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctcctttt 21969153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 21991638 - 21991589
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcatttt 51  Q
    |||||||||||||||  ||||||||||||||||||||||||||||| ||||    
T  21991638 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctcctttt 21991589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21969283 - 21969327
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  21969283 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 21969327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21991719 - 21991763
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  21991719 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 21991763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25488467 - 25488511
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||    
T  25488467 agaaccatac-aaaaagcacctaaggaattgtacctaagttttctc 25488511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25561056 - 25561012
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||    
T  25561056 agaaccatac-aaaaagcacctaaggaattgtacctaagttttctc 25561012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 32237520 - 32237564
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  32237520 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 32237564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38125305 - 38125349
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||    
T  38125305 agaaccatacgaaaa-acacctaatgaattgtacctaagttttctc 38125349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 39850389 - 39850345
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||    
T  39850389 agaaccatacgaaaaa-cacctaaggaatagtacctaagttttctc 39850345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 45487844 - 45487800
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  45487844 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 45487800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 45487925 - 45487969
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  45487925 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 45487969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 50099560 - 50099604
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  50099560 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 50099604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 45713029 - 45713071
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttc 44  Q
    |||||||||||||||  |||||||||||||||||||||||||||    
T  45713029 agaaccatacgaaaag-cacctaaggaattgtacctaagttttc 45713071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8831785 - 8831744
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagtttt 43  Q
    |||||||||||||||  ||||||||||||||||||||||||||    
T  8831785 agaaccatacgaaaag-cacctaaggaattgtacctaagtttt 8831744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 10017148 - 10017110
Alignment:
Q  13 aaaaacacctaaggaattgtacctaagttttctcatttt 51  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  10017148 aaaagcacctaaggaattgtacctaagttttctcttttt 10017110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 10254602 - 10254564
Alignment:
Q  13 aaaaacacctaaggaattgtacctaagttttctcatttt 51  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  10254602 aaaagcacctaaggaattgtacctaagttttctcttttt 10254564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 10441395 - 10441433
Alignment:
Q  13 aaaaacacctaaggaattgtacctaagttttctcatttt 51  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  10441395 aaaagcacctaaggaattgtacctaagttttctcctttt 10441433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 35368594 - 35368545
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcatttt 51  Q
    |||||||||||||||  ||| ||||||||||||||||||||||||| ||||    
T  35368594 agaaccatacgaaaag-cacataaggaattgtacctaagttttctcctttt 35368545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 45712938 - 45712904
Alignment:
Q  12 aaaaaacacctaaggaattgtacctaagttttctc 46  Q
    ||||| |||||||||||||||||||||||||||||    
T  45712938 aaaaagcacctaaggaattgtacctaagttttctc 45712904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 1476688 - 1476729
Alignment:
Q  13 aaaaacacctaaggaattgtacctaagttttctcattttatt 54  Q
    |||| |||||||||||||||||||||||||| || |||||||    
T  1476688 aaaagcacctaaggaattgtacctaagttttatccttttatt 1476729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3970536 - 3970492
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||| ||||||||||||||    
T  3970536 agaaccatacgaaaag-cacctaaggaattgcacctaagttttctc 3970492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4072318 - 4072274
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||    
T  4072318 agaaccatacgaaaag-cacctaagaaattgtacctaagttttctc 4072274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 5529936 - 5529892
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||    
T  5529936 agaaccatacgaaaag-cacctaagaaattgtacctaagttttctc 5529892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10017235 - 10017279
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  ||||||||||||||||||||| |||||||    
T  10017235 agaaccatacgaaaag-cacctaaggaattgtacctaaattttctc 10017279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10117637 - 10117681
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  ||||||||||||||||||||| |||||||    
T  10117637 agaaccatacgaaaag-cacctaaggaattgtacctaaattttctc 10117681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10254695 - 10254739
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  ||||||||||||||||||||| |||||||    
T  10254695 agaaccatacgaaaag-cacctaaggaattgtacctaaattttctc 10254739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 13078208 - 13078164
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||| ||||||||||||||    
T  13078208 agaaccatacgaaaag-cacctaaggaattgcacctaagttttctc 13078164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 13724033 - 13723989
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||| ||||| |||||||| ||||||||||||||||||||    
T  13724033 agaaccatac-aaaaagcacctaagaaattgtacctaagttttctc 13723989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 22176235 - 22176279
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||| ||||| ||| |||||||||||||||||||||||||    
T  22176235 agaaccatac-aaaaagcacataaggaattgtacctaagttttctc 22176279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 26906499 - 26906455
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||   ||||||||||||||||||||||||||||    
T  26906499 agaaccatacgaaaagg-acctaaggaattgtacctaagttttctc 26906455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 36278882 - 36278926
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||   ||||||||||||||||||||||||||||    
T  36278882 agaaccatacgaaaagg-acctaaggaattgtacctaagttttctc 36278926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36657478 - 36657434
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  || ||||||||||||||||||||||||||    
T  36657478 agaaccatacgaaaag-catctaaggaattgtacctaagttttctc 36657434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 36657559 - 36657603
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  || ||||||||||||||||||||||||||    
T  36657559 agaaccatacgaaaag-catctaaggaattgtacctaagttttctc 36657603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36822805 - 36822761
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  || ||||||||||||||||||||||||||    
T  36822805 agaaccatacgaaaag-cagctaaggaattgtacctaagttttctc 36822761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 39850482 - 39850515
Alignment:
Q  13 aaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||| |||||||||||||||||||||||||||||    
T  39850482 aaaagcacctaaggaattgtacctaagttttctc 39850515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 44611509 - 44611545
Alignment:
Q  3 aaccatacgaaaaaacacctaaggaattgtacctaagt 40  Q
    |||||||| |||||||||||||||||||||||||||||    
T  44611509 aaccatac-aaaaaacacctaaggaattgtacctaagt 44611545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 12838122 - 12838079
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttct 45  Q
    |||||||||| ||||| ||||||||||||||||| ||||||||||    
T  12838122 agaaccatac-aaaaagcacctaaggaattgtacataagttttct 12838079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 26976970 - 26977009
Alignment:
Q  3 aaccatacgaaaaaacacctaaggaattgtacctaagtttt 43  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  26976970 aaccatacgaaaa-acacctaaagaattgtacctaagtttt 26977009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 43639219 - 43639251
Alignment:
Q  13 aaaaacacctaaggaattgtacctaagttttct 45  Q
    |||| ||||||||||||||||||||||||||||    
T  43639219 aaaagcacctaaggaattgtacctaagttttct 43639251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 45879 - 45829
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcatttta 52  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||| |||||    
T  45879 agaaccatac-aaaaagcacctaaggaattgtacctaagttttctcctttta 45829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 45971 - 46004
Alignment:
Q  13 aaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||| |||||||||||||||||||||||||||||    
T  45971 aaaagcacctaaggaattgtacctaagttttctc 46004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 31231742 - 31231792
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcatttta 52  Q
    |||||||||||||||  ||||||||||||||||||||||||||||| |||||    
T  31231742 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctcctttta 31231792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10936596 - 10936640
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  10936596 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 10936640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24836146 - 24836190
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  24836146 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 24836190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 31231659 - 31231615
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||    
T  31231659 agaaccatac-aaaaagcacctaaggaattgtacctaagttttctc 31231615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 33721872 - 33721828
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  33721872 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 33721828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 34052405 - 34052449
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  34052405 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 34052449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 35339323 - 35339279
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  35339323 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 35339279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38528538 - 38528582
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  38528538 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 38528582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 39143832 - 39143876
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||    
T  39143832 agaaccatacgaaaa-acacctaatgaattgtacctaagttttctc 39143876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 35665744 - 35665786
Alignment:
Q  3 aaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||  |||||||||||||||||||||||||||||    
T  35665744 aaccatacgaaaag-cacctaaggaattgtacctaagttttctc 35665786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17101699 - 17101655
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||    
T  17101699 agaaccatacgaaaag-cacctaagaaattgtacctaagttttctc 17101655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17101700 - 17101744
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||    
T  17101700 agaaccatacgaaaag-cacctaagaaattgtacctaagttttctc 17101744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 20184272 - 20184239
Alignment:
Q  13 aaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||| |||||||||||||||||||||||||||||    
T  20184272 aaaagcacctaaggaattgtacctaagttttctc 20184239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 24836065 - 24836021
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||    
T  24836065 agaaccatacgaaaag-cacctaagcaattgtacctaagttttctc 24836021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 30259192 - 30259236
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||| ||||| |||| ||||||||||||||||||||||||    
T  30259192 agaaccatac-aaaaagcacccaaggaattgtacctaagttttctc 30259236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 30594727 - 30594694
Alignment:
Q  13 aaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||| |||||||||||||||||||||||||||||    
T  30594727 aaaagcacctaaggaattgtacctaagttttctc 30594694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 34052324 - 34052280
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  ||||||||||| |||||||||||||||||    
T  34052324 agaaccatacgaaaag-cacctaaggaaatgtacctaagttttctc 34052280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 35665678 - 35665634
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||    
T  35665678 agaaccatacgaaaag-cacctaagcaattgtacctaagttttctc 35665634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 38883266 - 38883222
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  || ||||||||||||||||||||||||||    
T  38883266 agaaccatacgaaaag-catctaaggaattgtacctaagttttctc 38883222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38883347 - 38883391
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  || ||||||||||||||||||||||||||    
T  38883347 agaaccatacgaaaag-catctaaggaattgtacctaagttttctc 38883391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 48103402 - 48103369
Alignment:
Q  13 aaaaacacctaaggaattgtacctaagttttctc 46  Q
    ||||||||||||| ||||||||||||||||||||    
T  48103402 aaaaacacctaagaaattgtacctaagttttctc 48103369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32623260 - 32623219
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagtttt 43  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  32623260 agaaccatacgaaaaa-cacctaaggaattgtacctaagtttt 32623219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4266027 - 4265983
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||    
T  4266027 agaaccatacgaaaaa-cacctaagaaattgtacctaagttttctc 4265983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4266108 - 4266152
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  4266108 agaaccatacgaaaa-acacctaaggaattgtaccgaagttttctc 4266152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 20476557 - 20476601
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  20476557 agaaccatacgaaaag-cacctaaggaattgtacctaagttttctc 20476601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24397372 - 24397415
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttct 45  Q
    |||||||||||||||  ||||||||||||||||||||||||||||    
T  24397372 agaaccatacgaaaag-cacctaaggaattgtacctaagttttct 24397415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 35420657 - 35420606
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcattttat 53  Q
    |||||||||||||||  || |||||||||||||||||||||||||| ||||||    
T  35420657 agaaccatacgaaaag-catctaaggaattgtacctaagttttctccttttat 35420606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 44
Target Start/End: Original strand, 12744963 - 12744994
Alignment:
Q  13 aaaaacacctaaggaattgtacctaagttttc 44  Q
    ||||||||||||||||||||||||||||||||    
T  12744963 aaaaacacctaaggaattgtacctaagttttc 12744994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 8364756 - 8364797
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagtttt 43  Q
    |||||||||| ||||| ||||||||||||||||||||||||||    
T  8364756 agaaccatac-aaaaagcacctaaggaattgtacctaagtttt 8364797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 15855888 - 15855839
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcatttt 51  Q
    |||||||||||||||  || |||||||||||||||||||||||||| ||||    
T  15855888 agaaccatacgaaaag-catctaaggaattgtacctaagttttctcctttt 15855839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29141850 - 29141801
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcatttt 51  Q
    |||||||||||||||| |||||||| ||||||| |||||||||||| ||||    
T  29141850 agaaccatacgaaaaa-cacctaagcaattgtatctaagttttctcctttt 29141801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 43539236 - 43539277
Alignment:
Q  4 accatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||| |||||||||||||||||||||| |||||||    
T  43539236 accatacgaaaa-acacctaaggaattgtacctaaattttctc 43539277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2268217 - 2268173
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||| ||||||||| ||||||||||||||||| |||||||    
T  2268217 agaaccatac-aaaaaacacttaaggaattgtacctaatttttctc 2268173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 13754325 - 13754292
Alignment:
Q  13 aaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||| |||||||||||||||||||||||||    
T  13754325 aaaaacacataaggaattgtacctaagttttctc 13754292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 15855969 - 15856013
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  || ||||||||||||||||||||||||||    
T  15855969 agaaccatacgaaaag-catctaaggaattgtacctaagttttctc 15856013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 16473081 - 16473125
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  || ||||||||||||||||||||||||||    
T  16473081 agaaccatacgaaaag-catctaaggaattgtacctaagttttctc 16473125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 35420738 - 35420782
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||  || ||||||||||||||||||||||||||    
T  35420738 agaaccatacgaaaag-catctaaggaattgtacctaagttttctc 35420782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 17583367 - 17583418
Alignment:
Q  3 aaccatacgaaaaaacacctaaggaattgtacctaagttttctcattttatta 55  Q
    |||||||||||||  |||||||| |||||||||||||||||||| ||| ||||    
T  17583367 aaccatacgaaaag-cacctaagaaattgtacctaagttttctcctttaatta 17583418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 26448 - 26406
Alignment:
Q  3 aaccatacgaaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||  |||||||||||||||||||||||||||||    
T  26448 aaccatacgaaaag-cacctaaggaattgtacctaagttttctc 26406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 26457 - 26491
Alignment:
Q  12 aaaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||| ||||||||||||||||||||||||||||||    
T  26457 aaaatacacctaaggaattgtacctaagttttctc 26491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 2076 - 2110
Alignment:
Q  12 aaaaaacacctaaggaattgtacctaagttttctc 46  Q
    ||||| |||||||||||||||||||||||||||||    
T  2076 aaaaagcacctaaggaattgtacctaagttttctc 2110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 51108 - 51059
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttctcatttt 51  Q
    |||||||||||||||   |||||||||||||||||||||||||||| ||||    
T  51108 agaaccatacgaaaagg-acctaaggaattgtacctaagttttctcctttt 51059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 7120 - 7087
Alignment:
Q  13 aaaaacacctaaggaattgtacctaagttttctc 46  Q
    |||||||||||||||||||||||||| |||||||    
T  7120 aaaaacacctaaggaattgtacctaaattttctc 7087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 14476 - 14443
Alignment:
Q  13 aaaaacacctaaggaattgtacctaagttttctc 46  Q
    ||||||||||||| ||||||||||||||||||||    
T  14476 aaaaacacctaagaaattgtacctaagttttctc 14443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10161 - 10118
Alignment:
Q  1 agaaccatacgaaaaaacacctaaggaattgtacctaagttttct 45  Q
    ||||||||||| |||| ||||||||||||| ||||||||||||||    
T  10161 agaaccatacgcaaaa-cacctaaggaattatacctaagttttct 10118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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