View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1575_low_8 (Length: 250)
Name: NF1575_low_8
Description: NF1575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1575_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 53172783 - 53173026
Alignment:
| Q |
1 |
ttctacgtatcaattgactggatacaattttcatttacatcaaatgtaaatcaacattgggtacgtcatcttatcatgcaaacattagactagtgt---- |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53172783 |
ttctacgtatcaattgactggatacaattttcatttacatcaaatgtaaatcaacattgggtacgtcatcttatcatgcaaacattagactagtgtgtgt |
53172882 |
T |
|
| Q |
97 |
gcactcttaaagatttactagttagaaaactattcataattcaaatagagataggtttttaattcgaaacagattgagtgttcctaattttaagtttaac |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53172883 |
gcactcttaaagatttactagttagaaaactattcataattcaaatagagataggtttttaattcgaaacagattgagtgttcctaattttaagtttaac |
53172982 |
T |
|
| Q |
197 |
tagtttctattttctttatgggtattgggttttgtccccctatg |
240 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
53172983 |
tagtttctattttctttatgggtattgggttttgcccccctatg |
53173026 |
T |
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