View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576-INSERTION-5 (Length: 546)
Name: NF1576-INSERTION-5
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576-INSERTION-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 8 - 546
Target Start/End: Complemental strand, 44974071 - 44973536
Alignment:
| Q |
8 |
gaaagaatgtctagaagagttgattttcctgcaccacttggaccaacaatggcaagaatctcagaagggtatgctgtgagggaaacatctttgaggatgt |
107 |
Q |
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| T |
44974071 |
gaaagaatgtctagaagagttgattttcctgcaccacttggaccaacaatggcaagaatctcagaagggtatgctgtgagggaaacatctttgaggatgt |
44973972 |
T |
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| Q |
108 |
agtttnnnnnnnttggtgtacaatgtttgaagaagagaaatggtgcaatgatggagttgtttgtttgtaggtttttggagtaagagattgaagttgctgt |
207 |
Q |
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| T |
44973971 |
agtttgggggggttggtgtacaatgtttgaagaagagaaatggtgcaatgatggtgttgtttgtttgtaggtttttggagtaagagattgaagttgctgt |
44973872 |
T |
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| Q |
208 |
tagtttgtatgtttttggtggaagtggtgatggttggttttccatagctaagggagagaagttggagtgaaattaaggttttggtgggatggaacaatga |
307 |
Q |
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| T |
44973871 |
tagtttgtatgtttttggtggaagtggtgatggttggttttccatagctaagggagagaagttggagtgaaattaaggttttggtgggatggaacaatga |
44973772 |
T |
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| Q |
308 |
gtgtttgtgtttccatgcgtt-ggaatgtataacgttggtgtggatgataaagagagacaaaaataaaggaataattaaaaatgttttgtaccttttggt |
406 |
Q |
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| T |
44973771 |
gtgtttgtgtttccatgcgttgggagagtataacgttggtgtggatgataaagagagacaaaaataaaggaataattaaaaatgttttgtaccttttggt |
44973672 |
T |
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| Q |
407 |
ggttgcattattatcctactatttttcctatcatgggattatactgtattacaagcaatcagcacttatatatatagtccgtgagccttttgtgtttata |
506 |
Q |
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| T |
44973671 |
ggttgcattattatcctactatttttcctatcatggaattatactgtattacaagcaatcagcact----tatatagtccgtgagccttttgtgtttata |
44973576 |
T |
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| Q |
507 |
aatgcaaaagtgatatacattttatttaacaactcattat |
546 |
Q |
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| T |
44973575 |
aatgcaacaatcatatacattttatttaacaactcattat |
44973536 |
T |
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