View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15760_high_1 (Length: 899)

Name: NF15760_high_1
Description: NF15760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15760_high_1
NF15760_high_1
[»] chr6 (1 HSPs)
chr6 (20-640)||(2310556-2311188)


Alignment Details
Target: chr6 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 20 - 640
Target Start/End: Complemental strand, 2311188 - 2310556
Alignment:
Q  20 ccagttaaaggtttttgtctat--atagtgtgtgcactactgtgtattgtatacttgaggctgtagggagcataaaattgtgacatgtcaaaagtagaat 117  Q
    |||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2311188 ccagttaaaggtttgtgtctatctatagtgtgtgcactactgtgtattgtatacttgaggctgtaggaagcataaaattgtgacatgtcaaaagtagaat 2311089  T
Q  118 tatgtgaagtgatgatgtgtcgatgaataataatactgtagatagatattgttgaaccga-aaaagtaaatcaaattattaagcaaacagattcaaatag 216  Q
    ||||||||||||| ||||||  |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||    
T  2311088 tatgtgaagtgatcatgtgttcatgaataataatactgtagacaaatattgttgaaccgaaaaaagtaaatcaaattatcaagcaaatagattcaaatag 2310989  T
Q  217 atggtcacacaacatcaaggtgttttttattccccaacatatgtggggcatctgctaggtagttaaattcaaaattaataaaacagaattccaaaaatga 316  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  2310988 atggtcacacaacatcaaggtgttttttattccccaacaaatgtggggcatctgctaggtagttaaattc-aaattaataaaacagaatttcaaaaatga 2310890  T
Q  317 taaaatatgaaatgca----------agcaaacagcttcagatcacagcttctcttcatcctcgccaactgcaaaagtaagataaaatttataaaacttc 406  Q
    ||||||||||||||||          ||||| |||||||||||||||||||||||||| ||||  || ||||||||||||||||||||||||||||||||    
T  2310889 taaaatatgaaatgcaacatggtagtagcaaccagcttcagatcacagcttctcttcaccctcctcatctgcaaaagtaagataaaatttataaaacttc 2310790  T
Q  407 tattctatgttcgcctgccaattacagatatgcaaaaacgtatatgcaaagctacttcttggtggtttaaattttcaaataaataaacattgatcgcaag 506  Q
    |||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2310789 tattctatgtccccctggcaattacagatatgcaaaaacgtatatgcaaagctacttcttggtggtttaaattttcaaataaataaacattgatcgcaag 2310690  T
Q  507 taattgaaaagagagaaatgagaaaagtcaaaagagctctaaccaaggttagcttgaacggccttgcctgctgccttaatagcaccattgttatttccct 606  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||  || || |||||||||   ||||| ||||||||||||| |||||  |||||    
T  2310689 taattgaaaagagagaaatgagaaaagtcaaaatagctctaaccaagggcagatttaacggccttctgtgctgtcttaatagcaccaatgttacatccct 2310590  T
Q  607 taaacattaaaataaaataataaattattagttt 640  Q
    ||||||||||||||||||||||||||||||||||    
T  2310589 taaacattaaaataaaataataaattattagttt 2310556  T

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