View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15760_high_6 (Length: 293)

Name: NF15760_high_6
Description: NF15760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15760_high_6
NF15760_high_6
[»] chr7 (10 HSPs)
chr7 (114-277)||(34850692-34850860)
chr7 (15-94)||(34850620-34850699)
chr7 (29-109)||(25072677-25072757)
chr7 (41-119)||(5034074-5034152)
chr7 (69-119)||(28249077-28249127)
chr7 (29-119)||(34653952-34654042)
chr7 (56-103)||(49103203-49103250)
chr7 (78-119)||(9479268-9479309)
chr7 (29-119)||(29171602-29171694)
chr7 (30-115)||(42766633-42766718)
[»] chr2 (5 HSPs)
chr2 (29-121)||(5712584-5712676)
chr2 (29-119)||(32700594-32700684)
chr2 (29-121)||(39848546-39848638)
chr2 (61-104)||(16202160-16202203)
chr2 (74-119)||(7598918-7598963)
[»] chr3 (4 HSPs)
chr3 (34-139)||(27483380-27483485)
chr3 (29-119)||(44890640-44890730)
chr3 (29-119)||(31132960-31133050)
chr3 (29-119)||(11836947-11837037)
[»] chr8 (8 HSPs)
chr8 (29-119)||(35458766-35458856)
chr8 (74-119)||(12942173-12942218)
chr8 (87-126)||(30539890-30539929)
chr8 (41-119)||(2062689-2062767)
chr8 (77-119)||(9617280-9617322)
chr8 (45-103)||(39139342-39139400)
chr8 (45-119)||(40691147-40691221)
chr8 (37-101)||(40554389-40554453)
[»] chr5 (8 HSPs)
chr5 (29-119)||(2823543-2823633)
chr5 (63-119)||(10918296-10918352)
chr5 (42-123)||(8689083-8689164)
chr5 (61-109)||(8570312-8570360)
chr5 (74-119)||(39981600-39981645)
chr5 (45-109)||(6391511-6391575)
chr5 (29-109)||(22859708-22859788)
chr5 (43-119)||(28613079-28613155)
[»] chr4 (6 HSPs)
chr4 (41-121)||(23620983-23621063)
chr4 (28-121)||(6829072-6829165)
chr4 (28-121)||(52264299-52264392)
chr4 (61-119)||(29145103-29145161)
chr4 (61-119)||(29145490-29145548)
chr4 (28-100)||(52973694-52973766)
[»] chr1 (11 HSPs)
chr1 (41-115)||(14346327-14346401)
chr1 (61-121)||(23981476-23981536)
chr1 (29-119)||(22863230-22863318)
chr1 (45-119)||(47295772-47295846)
chr1 (239-271)||(3306856-3306888)
chr1 (61-119)||(4362179-4362237)
chr1 (29-119)||(16010653-16010743)
chr1 (74-116)||(51370196-51370238)
chr1 (245-278)||(6699626-6699659)
chr1 (62-102)||(25412360-25412400)
chr1 (45-121)||(29639675-29639751)
[»] scaffold0003 (1 HSPs)
scaffold0003 (29-92)||(324971-325034)
[»] scaffold0373 (1 HSPs)
scaffold0373 (28-121)||(7255-7348)
[»] chr6 (1 HSPs)
chr6 (29-85)||(33599950-33600006)


Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 114 - 277
Target Start/End: Original strand, 34850692 - 34850860
Alignment:
Q  114 tttaaataaattagtaaatctaatcaaaccgtttgcgaaacttcgatcttacaaaacctag-----tcaaattatttccacccctatccacatattataa 208  Q
    |||||||||||||||| | ||||||||||||||||| ||||||   |||||||||||||||     ||||||||||||||||||||||||||||||||||    
T  34850692 tttaaataaattagtagacctaatcaaaccgtttgccaaacttaagtcttacaaaacctagctcagtcaaattatttccacccctatccacatattataa 34850791  T
Q  209 acatgctatgtgaaaatgccaacaacagttcttaatgtattgtttaagcaactaaaaagaatataatat 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34850792 acatgctatgtgaaaatgccaacaacagttcttaatgtattgtttaagcaactaaaaagaatataatat 34850860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 34850620 - 34850699
Alignment:
Q  15 tctaaaactccatatttaatatcatcgatctattaattcgctggtgtatttaactttaaatcacattacttatttaaata 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34850620 tctaaaactccatatttaatatcatcgatctattaattcgctggtgtatttaactttaaatcacattacttatttaaata 34850699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 25072757 - 25072677
Alignment:
Q  29 tttaatatcatcgatctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaata 109  Q
    ||||||||||| |||||||||  ||| | || |||||||| || |||||||||||||||||||| ||||||||||| ||||    
T  25072757 tttaatatcattgatctattagctcgttagtctatttaaccttgaatcacattacttatttaaagatgttcatatgaaata 25072677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 5034152 - 5034074
Alignment:
Q  41 gatctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaa 119  Q
    ||||||||| |||||| || |||||||  ||  |||||||| |||||||||||||||||||||| ||||  ||||||||    
T  5034152 gatctattagttcgctagtctatttaaactttgatcacattgcttatttaaatatgttcatatgaaataggcttttaaa 5034074  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 28249077 - 28249127
Alignment:
Q  69 tttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaa 119  Q
    |||||||||||| |||||| |||||||||||||||| |||| |||||||||    
T  28249077 tttaaatcacataacttatataaatatgttcatatgaaatagacttttaaa 28249127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 34653952 - 34654042
Alignment:
Q  29 tttaatatcatcgatctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaa 119  Q
    |||||| |||| ||| ||||| |||||| || |||||||  ||| |||||||||||||||||||||| |||| ||  |||| |||||||||    
T  34653952 tttaatctcattgatatattagttcgctagtctatttaaaattagatcacattacttatttaaatatattcacattaaatagacttttaaa 34654042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 49103203 - 49103250
Alignment:
Q  56 tggtgtatttaactttaaatcacattacttatttaaatatgttcatat 103  Q
    |||| |||||||  |||||||| |||||||||||||||||||||||||    
T  49103203 tggtctatttaaacttaaatcatattacttatttaaatatgttcatat 49103250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 9479309 - 9479268
Alignment:
Q  78 cattacttatttaaatatgttcatatgtaatatacttttaaa 119  Q
    |||| |||||||||||||||||||||| ||||| ||||||||    
T  9479309 cattgcttatttaaatatgttcatatgaaatattcttttaaa 9479268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 29171602 - 29171694
Alignment:
Q  29 tttaatatcatcgatctattaattcgctggtgtatttaactttaaatcacattacttatttaa--atatgttcatatgtaatatacttttaaa 119  Q
    ||||||||| ||||| |||||  ||||| || ||||||||||   ||||| ||||||||||||  ||||||||||||| ||||  ||||||||    
T  29171602 tttaatatcgtcgatttattagctcgctagtctatttaacttgggatcacgttacttatttaaatatatgttcatatgaaataggcttttaaa 29171694  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 42766633 - 42766718
Alignment:
Q  30 ttaatatcatcgatctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttt 115  Q
    ||||| |||| ||| || || |||||| || |||||||| ||| ||||  ||||||||||||| || ||||||||||||| |||||    
T  42766633 ttaatctcattgatataatagttcgctagtctatttaaccttagatcaatttacttatttaaagatattcatatgtaataaacttt 42766718  T

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Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 5712584 - 5712676
Alignment:
Q  29 tttaatatcatcgatctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaata 121  Q
    ||||||||||| |||||||||| | ||| || |||||||| ||| ||||||||||||||||||||||||||||||| |||| |||||||||||    
T  5712584 tttaatatcattgatctattaacttgctagtctatttaaccttagatcacattacttatttaaatatgttcatatgaaatagacttttaaata 5712676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 32700684 - 32700594
Alignment:
Q  29 tttaatatcatcgatctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaa 119  Q
    ||||||||||| ||| ||||| |||||| || |||||||| || |||||||||||||||||||| ||||||||||| |||| || ||||||    
T  32700684 tttaatatcattgatttattagttcgctagtctatttaaccttgaatcacattacttatttaaagatgttcatatgaaatagacatttaaa 32700594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 39848546 - 39848638
Alignment:
Q  29 tttaatatcatcgatctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaata 121  Q
    ||||||||||  ||||||||| |||||| || |||||||  || |||||||||||||||||||| ||||||||||| ||||  ||||||||||    
T  39848546 tttaatatcactgatctattagttcgctagtctatttaaacttgaatcacattacttatttaaagatgttcatatgaaataggcttttaaata 39848638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 16202160 - 16202203
Alignment:
Q  61 tatttaactttaaatcacattacttatttaaatatgttcatatg 104  Q
    |||||||| || |||||||||||||||||||| |||||||||||    
T  16202160 tatttaaccttgaatcacattacttatttaaagatgttcatatg 16202203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 7598963 - 7598918
Alignment:
Q  74 atcacattacttatttaaatatgttcatatgtaatatacttttaaa 119  Q
    ||||| ||||||||||||||||||||||||  ||||| ||||||||    
T  7598963 atcacgttacttatttaaatatgttcatataaaatatgcttttaaa 7598918  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 27483380 - 27483485
Alignment:
Q  34 tatcatcgatctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaataaattagtaaatc 133  Q
    |||||| |||||||||  || || || |||||||  ||||||||||||||||||||||||||||||||||| |||| ||||||||| | |||||||  ||    
T  27483380 tatcattgatctattagctcactagtctatttaatcttaaatcacattacttatttaaatatgttcatatgaaatagacttttaaacagattagtaggtc 27483479  T
Q  134 taatca 139  Q
    ||||||    
T  27483480 taatca 27483485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 44890730 - 44890640
Alignment:
Q  29 tttaatatcatcgatctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaa 119  Q
    ||||||||||| |||||||||  ||||| || |||||||| || |||||||||||||||||||| ||||||||||  |||| |||||||||    
T  44890730 tttaatatcattgatctattatctcgctagtctatttaaccttgaatcacattacttatttaaagatgttcatattaaatagacttttaaa 44890640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 31133050 - 31132960
Alignment:
Q  29 tttaatatcatcgatctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaa 119  Q
    |||||| |||| ||||||||| || | | || |||||||  ||| ||||||||||||||||||| ||||||||||| ||||  ||||||||    
T  31133050 tttaatctcattgatctattagtttgatagtatatttaaacttagatcacattacttatttaaagatgttcatatgaaataagcttttaaa 31132960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 11836947 - 11837037
Alignment:
Q  29 tttaatatcatcgatctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaa 119  Q
    ||||||||||| ||| |||||  ||||| || |||||||| ||  |||||||||||||||||||  |||| ||||| || || ||||||||    
T  11836947 tttaatatcattgatatattagctcgctagtctatttaacctttgatcacattacttatttaaaggtgttgatatgaaacatgcttttaaa 11837037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 35458856 - 35458766
Alignment:
Q  29 tttaatatcatcgatctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaa 119  Q
    ||||||||||| |||||||||  ||||| || |||||||||||  ||||||||||||||||||| | ||||||||| ||||| ||||||||    
T  35458856 tttaatatcattgatctattagctcgctagtctatttaactttggatcacattacttatttaaaaacgttcatatgaaatatgcttttaaa 35458766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 12942218 - 12942173
Alignment:
Q  74 atcacattacttatttaaatatgttcatatgtaatatacttttaaa 119  Q
    |||||||||||||| |||||||||||||||| |||| |||||||||    
T  12942218 atcacattacttatgtaaatatgttcatatgaaataaacttttaaa 12942173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 30539890 - 30539929
Alignment:
Q  87 tttaaatatgttcatatgtaatatacttttaaataaatta 126  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  30539890 tttaaatatgttcatatgaaataaacttttaaataaatta 30539929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 2062689 - 2062767
Alignment:
Q  41 gatctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaa 119  Q
    |||||||||| ||||| || |||||||  ||  |||||||| |||||||||| ||||||||||| |||||  |||||||    
T  2062689 gatctattaaatcgctagtctatttaaacttcgatcacattgcttatttaaagatgttcatatgaaatatgattttaaa 2062767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 9617322 - 9617280
Alignment:
Q  77 acattacttatttaaatatgttcatatgtaatatacttttaaa 119  Q
    ||||| |||||||||||||||||||||| |||| |||||||||    
T  9617322 acattgcttatttaaatatgttcatatgaaatagacttttaaa 9617280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 39139400 - 39139342
Alignment:
Q  45 tattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatat 103  Q
    ||||| ||||||||| |||||||  ||| |||||||||||||||||||  |||||||||    
T  39139400 tattagttcgctggtctatttaaacttagatcacattacttatttaaaggtgttcatat 39139342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 40691221 - 40691147
Alignment:
Q  45 tattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaa 119  Q
    ||||| |||||| || |||||||  ||| |||||||| |||||||||| ||||||||||| ||||  ||||||||    
T  40691221 tattagttcgctagtctatttaaacttagatcacattgcttatttaaagatgttcatatgaaataggcttttaaa 40691147  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 40554389 - 40554453
Alignment:
Q  37 catcgatctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcat 101  Q
    ||||||| |||||||||| | || |||||||  ||| |||||||||||| |||||| ||||||||    
T  40554389 catcgatttattaattcgttagtctatttaaacttagatcacattacttttttaaagatgttcat 40554453  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 2823543 - 2823633
Alignment:
Q  29 tttaatatcatcgatctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaa 119  Q
    ||||||||||| |||| |||| |||| | || |||||||| ||| ||||||||||||||||||  ||||||||||| |||| |||||||||    
T  2823543 tttaatatcattgatccattagttcgttagtttatttaaccttatatcacattacttatttaataatgttcatatgaaataaacttttaaa 2823633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 10918352 - 10918296
Alignment:
Q  63 tttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaa 119  Q
    |||||| || |||||||||| ||||||||||||||||||||| |||| |||||||||    
T  10918352 tttaaccttgaatcacattatttatttaaatatgttcatatgaaataaacttttaaa 10918296  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 8689164 - 8689083
Alignment:
Q  42 atctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaataaa 123  Q
    ||||||||||| | | || |||||||  ||| |||||||||| |||||||| ||||||||||  |||| |||||||||||||    
T  8689164 atctattaatttgatagtctatttaaacttatatcacattacatatttaaagatgttcatataaaataaacttttaaataaa 8689083  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 8570312 - 8570360
Alignment:
Q  61 tatttaactttaaatcacattacttatttaaatatgttcatatgtaata 109  Q
    ||||||| |||| ||||||||||||||||||||| ||||||||| ||||    
T  8570312 tatttaaatttagatcacattacttatttaaatacgttcatatgaaata 8570360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 39981645 - 39981600
Alignment:
Q  74 atcacattacttatttaaatatgttcatatgtaatatacttttaaa 119  Q
    |||||||| |||||||||||||||||||||| ||||  ||||||||    
T  39981645 atcacattgcttatttaaatatgttcatatgaaataggcttttaaa 39981600  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 6391511 - 6391575
Alignment:
Q  45 tattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaata 109  Q
    ||||| |||||| || |||||||  ||| |||||||| |||||||||| ||||||||||| ||||    
T  6391511 tattagttcgctagtctatttaaacttagatcacattgcttatttaaagatgttcatatgaaata 6391575  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 22859708 - 22859788
Alignment:
Q  29 tttaatatcatcgatctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaata 109  Q
    ||||||||||| |||||||||  ||| | || | |||||| ||  ||||| ||||||||||||| ||||||||||| ||||    
T  22859708 tttaatatcattgatctattagctcgttagtctttttaaccttggatcaccttacttatttaaagatgttcatatgaaata 22859788  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 28613155 - 28613079
Alignment:
Q  43 tctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaa 119  Q
    ||||||||||  || || ||||||| |||| |||||||||| ||| |||  ||||||||||| |||| |||||||||    
T  28613155 tctattaatttactagtctatttaaatttagatcacattacatatctaaggatgttcatatgaaatagacttttaaa 28613079  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 121
Target Start/End: Original strand, 23620983 - 23621063
Alignment:
Q  41 gatctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaata 121  Q
    |||||||||||| ||| || |||||||  ||| |||||||| ||||||||||||||||||||||  ||| |||||||||||    
T  23620983 gatctattaatttgctagtctatttaaacttagatcacattgcttatttaaatatgttcatatgatatagacttttaaata 23621063  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 6829072 - 6829165
Alignment:
Q  28 atttaatatcatcgatctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaata 121  Q
    |||||||||||| |||||||||  | | | ||  ||||||| ||| ||| ||||||||||||||| ||||| ||||| |||| |||||||||||    
T  6829072 atttaatatcattgatctattagcttggtagtcaatttaacattagatcgcattacttatttaaagatgtttatatgaaatagacttttaaata 6829165  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 52264392 - 52264299
Alignment:
Q  28 atttaatatcatcgatctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaata 121  Q
    ||||||| ||||  || ||||| |||||| || |||||||  ||| ||||||||||||||| ||| ||||||||||| |||||  |||||||||    
T  52264392 atttaatctcattaatttattagttcgctagtttatttaaacttatatcacattacttattcaaagatgttcatatgaaatatgtttttaaata 52264299  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 29145161 - 29145103
Alignment:
Q  61 tatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaa 119  Q
    |||||||  ||||||||  ||||||||||||||||||||||||| || | |||||||||    
T  29145161 tatttaaacttaaatcaagttacttatttaaatatgttcatatgaaagagacttttaaa 29145103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 29145548 - 29145490
Alignment:
Q  61 tatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaa 119  Q
    |||||||  ||||||||  ||||||||||||||||||||||||| || | |||||||||    
T  29145548 tatttaaacttaaatcaagttacttatttaaatatgttcatatgaaagagacttttaaa 29145490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 52973766 - 52973694
Alignment:
Q  28 atttaatatcatcgatctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttca 100  Q
    |||||||  ||| ||||||||| |||||| || ||||| |  ||| ||||||||||||||||||| |||||||    
T  52973766 atttaatcacattgatctattagttcgctagtctattttaacttagatcacattacttatttaaagatgttca 52973694  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 14346327 - 14346401
Alignment:
Q  41 gatctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttt 115  Q
    ||||||||| || ||| || |||||||||||||||||||||||||||||||| |||||  |||| ||||| ||||    
T  14346327 gatctattagtttgctagtctatttaactttaaatcacattacttatttaaagatgtttttatgaaatatgcttt 14346401  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 23981476 - 23981536
Alignment:
Q  61 tatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaata 121  Q
    ||||||| |||| ||||||||||||||||||| ||| ||||||| ||||| ||||||||||    
T  23981476 tatttaaatttatatcacattacttatttaaacatgatcatatggaatatgcttttaaata 23981536  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 22863318 - 22863230
Alignment:
Q  29 tttaatatcatcgatctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaa 119  Q
    ||||||||||| ||||||||| ||||||| | |||||||| ||  ||||  ||||||||||||| ||||||||||  |||| |||||||||    
T  22863318 tttaatatcattgatctattagttcgctgatctatttaaccttgtatca--ttacttatttaaagatgttcatataaaataaacttttaaa 22863230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 47295772 - 47295846
Alignment:
Q  45 tattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaa 119  Q
    ||||| |||||| || |||||||  ||| |||||||| |||||||||| ||||||||||| |||| |||||||||    
T  47295772 tattagttcgctagtctatttaaacttagatcacattgcttatttaaagatgttcatatgaaatagacttttaaa 47295846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 3306888 - 3306856
Alignment:
Q  239 cttaatgtattgtttaagcaactaaaaagaata 271  Q
    |||||||||||||||||||||||||||||||||    
T  3306888 cttaatgtattgtttaagcaactaaaaagaata 3306856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 4362237 - 4362179
Alignment:
Q  61 tatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaa 119  Q
    |||||||  |||||||||||| |||||||||| ||||||||||| ||||  ||||||||    
T  4362237 tatttaaacttaaatcacattgcttatttaaaaatgttcatatgaaataggcttttaaa 4362179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 16010653 - 16010743
Alignment:
Q  29 tttaatatcatcgatctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaa 119  Q
    |||||||| || ||| ||||| |||||| || ||||||   ||||||||||||  | ||||||| ||||||||||| |||| |||||||||    
T  16010653 tttaatataattgatatattagttcgctagtctatttacacttaaatcacattgatgatttaaagatgttcatatgaaatagacttttaaa 16010743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 51370238 - 51370196
Alignment:
Q  74 atcacattacttatttaaatatgttcatatgtaatatactttt 116  Q
    |||||||| |||||||||||||||||||||| |||| ||||||    
T  51370238 atcacattgcttatttaaatatgttcatatgaaatagactttt 51370196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 6699659 - 6699626
Alignment:
Q  245 gtattgtttaagcaactaaaaagaatataatatt 278  Q
    |||||||||||||||||||||||| |||||||||    
T  6699659 gtattgtttaagcaactaaaaagagtataatatt 6699626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 25412360 - 25412400
Alignment:
Q  62 atttaactttaaatcacattacttatttaaatatgttcata 102  Q
    |||||| |||| ||||||||||||||||||| |||||||||    
T  25412360 atttaaatttagatcacattacttatttaaagatgttcata 25412400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 29639675 - 29639751
Alignment:
Q  45 tattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaata 121  Q
    |||||||||||| || |||||||  ||| ||||||||  ||||||||| || ||||||||  |||| ||||||||||    
T  29639675 tattaattcgctagtctatttaaacttatatcacattgtttatttaaagatattcatatgatatatgcttttaaata 29639751  T

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Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 324971 - 325034
Alignment:
Q  29 tttaatatcatcgatctattaattcgctggtgtatttaactttaaatcacattacttatttaaa 92  Q
    ||||||||||| ||| |||||||||| | || |||||||| ||| |||||||||||||||||||    
T  324971 tttaatatcattgatttattaattcgttagtctatttaacattagatcacattacttatttaaa 325034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 7348 - 7255
Alignment:
Q  28 atttaatatcatcgatctattaattcgctggtgtatttaactttaaatcacattacttatttaaatatgttcatatgtaatatacttttaaata 121  Q
    |||||||||||| |||||||||  | | | ||  ||||||| ||| ||| ||||||||||||||| ||||| ||||| |||| |||||||||||    
T  7348 atttaatatcattgatctattagcttggtagtcaatttaacattagatcgcattacttatttaaagatgtttatatgaaatagacttttaaata 7255  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 33599950 - 33600006
Alignment:
Q  29 tttaatatcatcgatctattaattcgctggtgtatttaactttaaatcacattactt 85  Q
    |||||||| || ||| ||||| ||| || ||||||||||| ||||||||||||||||    
T  33599950 tttaatattattgatttattagttcactagtgtatttaaccttaaatcacattactt 33600006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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