View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15760_high_7 (Length: 284)

Name: NF15760_high_7
Description: NF15760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15760_high_7
NF15760_high_7
[»] chr8 (6 HSPs)
chr8 (79-278)||(23573165-23573366)
chr8 (93-205)||(2688877-2688987)
chr8 (79-161)||(22922156-22922239)
chr8 (96-157)||(26377776-26377837)
chr8 (105-203)||(24577811-24577909)
chr8 (111-172)||(22512387-22512448)
[»] chr6 (13 HSPs)
chr6 (79-205)||(18203141-18203266)
chr6 (95-204)||(34374058-34374167)
chr6 (96-201)||(22873520-22873625)
chr6 (96-201)||(22888963-22889068)
chr6 (82-205)||(12881729-12881852)
chr6 (79-161)||(30049617-30049700)
chr6 (79-161)||(30051904-30051987)
chr6 (96-201)||(12778681-12778784)
chr6 (96-201)||(22910506-22910611)
chr6 (83-161)||(3541947-3542026)
chr6 (96-159)||(32361109-32361172)
chr6 (217-268)||(34374239-34374290)
chr6 (111-160)||(18720019-18720068)
[»] chr7 (8 HSPs)
chr7 (96-199)||(4303119-4303222)
chr7 (95-200)||(11001097-11001202)
chr7 (111-196)||(1369529-1369614)
chr7 (95-203)||(8915444-8915551)
chr7 (86-163)||(1786422-1786500)
chr7 (96-205)||(1217484-1217591)
chr7 (96-205)||(13883007-13883117)
chr7 (79-201)||(11228430-11228552)
[»] chr2 (10 HSPs)
chr2 (96-199)||(31635997-31636100)
chr2 (95-195)||(280285-280385)
chr2 (79-205)||(35681910-35682037)
chr2 (105-205)||(32162248-32162347)
chr2 (95-205)||(33053125-33053234)
chr2 (96-168)||(27952649-27952721)
chr2 (79-161)||(2165624-2165707)
chr2 (96-205)||(22011088-22011197)
chr2 (123-205)||(18945657-18945739)
chr2 (84-135)||(23457411-23457462)
[»] chr1 (9 HSPs)
chr1 (79-269)||(10927746-10927935)
chr1 (104-200)||(10926905-10927001)
chr1 (79-205)||(23988929-23989056)
chr1 (96-200)||(13441913-13442015)
chr1 (104-163)||(8966032-8966091)
chr1 (104-197)||(40805571-40805664)
chr1 (114-201)||(31915245-31915332)
chr1 (215-268)||(31915123-31915176)
chr1 (215-268)||(40805444-40805497)
[»] chr5 (3 HSPs)
chr5 (79-205)||(21845196-21845323)
chr5 (95-205)||(18252124-18252234)
chr5 (106-161)||(19677629-19677684)
[»] chr4 (7 HSPs)
chr4 (111-205)||(22716318-22716412)
chr4 (111-205)||(22988805-22988899)
chr4 (83-195)||(6659640-6659751)
chr4 (106-201)||(7634998-7635093)
chr4 (95-205)||(10494628-10494738)
chr4 (98-161)||(13085420-13085483)
chr4 (215-268)||(10494509-10494562)
[»] chr3 (4 HSPs)
chr3 (113-205)||(365892-365983)
chr3 (95-205)||(8536654-8536764)
chr3 (96-146)||(3064063-3064113)
chr3 (215-268)||(3064181-3064234)
[»] scaffold0110 (1 HSPs)
scaffold0110 (79-161)||(45922-46005)
[»] scaffold0054 (3 HSPs)
scaffold0054 (96-201)||(10359-10464)
scaffold0054 (95-205)||(49018-49128)
scaffold0054 (104-140)||(37484-37520)
[»] scaffold0024 (2 HSPs)
scaffold0024 (96-201)||(145442-145547)
scaffold0024 (215-268)||(144354-144407)
[»] scaffold0240 (1 HSPs)
scaffold0240 (156-205)||(15709-15758)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 7e-89; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 79 - 278
Target Start/End: Complemental strand, 23573366 - 23573165
Alignment:
Q  79 actataaaattaccaagaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgtt 178  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23573366 actataaaattactaagaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagcttcccatgcatgtt 23573267  T
Q  179 gattcctccaatgaacaagagaccacca-cctcct-cttcccattgaaaaaatgtggtagcatgccggatactttctagatccatcattttacccaaagt 276  Q
    || ||||||||||||||| ||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23573266 gactcctccaatgaacaaaagaccaccaccctcctggttcccattgaaaaaatgtggtagcatgccggatactttctagatccatcattttacccaaagt 23573167  T
Q  277 aa 278  Q
    ||    
T  23573166 aa 23573165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 93 - 205
Target Start/End: Complemental strand, 2688987 - 2688877
Alignment:
Q  93 aagaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatga 192  Q
    |||||||||| |||||| |||||||||||||| |||||||||||| |  ||||| ||||| | |||  |||||||||||||||||||| |||||||||||    
T  2688987 aagaaaccctcctacatgagtctcctccacctatgaagaactcgatcacgagttctcattctaata--gagtttcccatgcatgttgactcctccaatga 2688890  T
Q  193 acaagagaccacc 205  Q
    ||| |||| ||||    
T  2688889 acatgagatcacc 2688877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 22922156 - 22922239
Alignment:
Q  79 actataaaattaccaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaag 161  Q
    ||||||||||||| ||| || |||| |||||| |||||||||||||||||||||||||||||| ||||| |||| || ||||||    
T  22922156 actataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttcataaag 22922239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 26377837 - 26377776
Alignment:
Q  96 aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgat 157  Q
    ||||||| |||||| |||||||||||||| |||||||||||||||  |||| ||||| ||||    
T  26377837 aaaccctcctacatcagtctcctccacctttgaagaactcgaccccaagttctcattctgat 26377776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 24577811 - 24577909
Alignment:
Q  105 tacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaacaagagacca 203  Q
    ||||| |||||||||||| ||||||||| ||||||  ||||| || || ||||| |||  ||| | ||||| || | ||||||||| ||||||||||||    
T  24577811 tacatcagtctcctccacttctgaagaattcgaccttgagttctccttctgatacagaacttcgcttgcatatttactcctccaataaacaagagacca 24577909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 22512387 - 22512448
Alignment:
Q  111 agtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatg 172  Q
    |||||||||||||||| ||||||||||||| ||||| | ||| ||||||  || ||||||||    
T  22512387 agtctcctccacctctaaagaactcgaccccgagttcttattctgataagaagcttcccatg 22512448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 79 - 205
Target Start/End: Complemental strand, 18203266 - 18203141
Alignment:
Q  79 actataaaattaccaagaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgtt 178  Q
    |||||||||||||  ||||||||| |||||| |||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| |||||||||||    
T  18203266 actataaaattactgagaaaccctcctacatcagtctcctccacctctgaagaactcgaccc-gagttctcattttaataaagagttttccatgcatgtt 18203168  T
Q  179 gattcctccaatgaacaagagaccacc 205  Q
    || ||||| ||||||||||||||||||    
T  18203167 gactcctcgaatgaacaagagaccacc 18203141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 95 - 204
Target Start/End: Original strand, 34374058 - 34374167
Alignment:
Q  95 gaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaac 194  Q
    ||||||||  |||||||||||||||||| |||||||||||| |||| ||||| |||||||||||||||| |||||||||||||||| || ||||||||||    
T  34374058 gaaaccctcttacattagtctcctccacatctgaagaactccaccccgagttctcattttgataaagagattcccatgcatgttgactcttccaatgaac 34374157  T
Q  195 aagagaccac 204  Q
    ||||||||||    
T  34374158 aagagaccac 34374167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 22873625 - 22873520
Alignment:
Q  96 aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaaca 195  Q
    ||||||| |||||| |||||| ||||||||| | ||| |||| ||  |||| ||||| |||||||||| ||||||||||| |||| ||||||||||||||    
T  22873625 aaaccctcctacatcagtctcatccacctctaaggaaatcgatcccaagttctcattatgataaagagcttcccatgcatattgactcctccaatgaaca 22873526  T
Q  196 agagac 201  Q
    ||||||    
T  22873525 agagac 22873520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 22889068 - 22888963
Alignment:
Q  96 aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaaca 195  Q
    ||||||| |||||| |||||| ||||||||| | ||| | |||||  |||| ||||| |||||||||| ||||||||||| |||| ||||||||||||||    
T  22889068 aaaccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgcatattgactcctccaatgaaca 22888969  T
Q  196 agagac 201  Q
    ||||||    
T  22888968 agagac 22888963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 205
Target Start/End: Complemental strand, 12881852 - 12881729
Alignment:
Q  82 ataaaattaccaag-aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttga 180  Q
    |||||||||| ||| ||||||| |||||| ||||||||||||||  |||||||||||||| ||| | |||||  ||| ||||  ||||||||||||||||    
T  12881852 ataaaattactaaggaaaccctcctacatcagtctcctccacctaagaagaactcgaccccgagctctcattccgat-aagaacttcccatgcatgttga 12881754  T
Q  181 ttcctccaatgaacaagagaccacc 205  Q
     | || |||||||||||||||||||    
T  12881753 cttcttcaatgaacaagagaccacc 12881729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 30049700 - 30049617
Alignment:
Q  79 actataaaattaccaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaag 161  Q
    ||||||||||||| ||| || |||| |||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  30049700 actataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 30049617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 30051987 - 30051904
Alignment:
Q  79 actataaaattaccaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaag 161  Q
    ||||||||||||| ||| || |||| |||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  30051987 actataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 30051904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 96 - 201
Target Start/End: Original strand, 12778681 - 12778784
Alignment:
Q  96 aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaaca 195  Q
    |||||||  ||||| |||||||||||||||||||||||| |||||  | || ||||| |||||  ||||||||  |||||||||| ||||||||||||||    
T  12778681 aaaccctcttacatcagtctcctccacctctgaagaacttgaccccaaattctcattctgata--gagtttcctttgcatgttgactcctccaatgaaca 12778778  T
Q  196 agagac 201  Q
    ||||||    
T  12778779 agagac 12778784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 22910611 - 22910506
Alignment:
Q  96 aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaaca 195  Q
    ||||||| |||||| |||||| ||||||||| | ||| | |||||  |||| ||||| |||||||||| |||||||| || |||| ||||||||||||||    
T  22910611 aaaccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgtatattgactcctccaatgaaca 22910512  T
Q  196 agagac 201  Q
    ||||||    
T  22910511 agagac 22910506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 161
Target Start/End: Complemental strand, 3542026 - 3541947
Alignment:
Q  83 taaaattaccaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaag 161  Q
    ||||||||| ||| || |||| |||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  3542026 taaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 3541947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 32361172 - 32361109
Alignment:
Q  96 aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataa 159  Q
    ||||||| |||||||||||| |||||||||| || |||||||||  ||||| ||||| ||||||    
T  32361172 aaaccctcctacattagtcttctccacctctaaaaaactcgacctcgagttctcattatgataa 32361109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 268
Target Start/End: Original strand, 34374239 - 34374290
Alignment:
Q  217 ccattgaaaaaatgtggtagcatgccggatactttctagatccatcatttta 268  Q
    ||||||| ||||||| ||||||||| |||||| || ||||||||||||||||    
T  34374239 ccattgagaaaatgtagtagcatgctggatacattatagatccatcatttta 34374290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 18720068 - 18720019
Alignment:
Q  111 agtctcctccacctctgaagaactcgacccggagttttcattttgataaa 160  Q
    |||||||||||||| ||||||||||||||| || || | |||||||||||    
T  18720068 agtctcctccacctttgaagaactcgaccccgaattctaattttgataaa 18720019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 4303222 - 4303119
Alignment:
Q  96 aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaaca 195  Q
    ||||||| |||||| ||||||||||||||||||||||||||| || ||||| |||||||||||||||| ||||||||||||| || ||||||||||||||    
T  4303222 aaaccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaaca 4303123  T
Q  196 agag 199  Q
    ||||    
T  4303122 agag 4303119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 95 - 200
Target Start/End: Original strand, 11001097 - 11001202
Alignment:
Q  95 gaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaac 194  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||  | || ||||| |||||||||| |||||||||||||| | ||||||||||||     
T  11001097 gaaaccctcctacatcagtctcctccacctctgaagaactcgaccccaaattctcattgtgataaagagcttcccatgcatgttaactcctccaatgaaa 11001196  T
Q  195 aagaga 200  Q
    ||||||    
T  11001197 aagaga 11001202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 1369614 - 1369529
Alignment:
Q  111 agtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaacaa 196  Q
    ||||||||||||||||||||||||||| || ||||| | ||| |||||||||| |||||||| ||||||| |||||||||||||||    
T  1369614 agtctcctccacctctgaagaactcgagcccgagttcttattctgataaagagcttcccatgaatgttgactcctccaatgaacaa 1369529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 95 - 203
Target Start/End: Original strand, 8915444 - 8915551
Alignment:
Q  95 gaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaac 194  Q
    |||||||| |||||| ||||||||||| |||||||||||| ||||| || || ||||| | ||||| ||  ||||||||||||||| |||||| ||||||    
T  8915444 gaaaccctcctacatcagtctcctccatctctgaagaactagaccccgaattctcattctaataaaaag-ctcccatgcatgttgactcctccgatgaac 8915542  T
Q  195 aagagacca 203  Q
    |||||||||    
T  8915543 aagagacca 8915551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 1786500 - 1786422
Alignment:
Q  86 aattaccaagaaacccttc-tacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagag 163  Q
    |||||| |||||| ||||| ||||| |||||||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  1786500 aattactaagaaaaccttcctacatgagtctcctccacctctgaagaactcgacctcgagttctcattttgataaagag 1786422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 1217484 - 1217591
Alignment:
Q  96 aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaaca 195  Q
    ||||||| || ||| |||||||||||||| ||||||||||||||| |||||  | ||||||||||||| ||  ||||||||| |  ||||||||| ||||    
T  1217484 aaaccctcctgcatcagtctcctccacctttgaagaactcgaccc-gagttcacgttttgataaagagatt-tcatgcatgtcgtgtcctccaattaaca 1217581  T
Q  196 agagaccacc 205  Q
    ||||||||||    
T  1217582 agagaccacc 1217591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 13883007 - 13883117
Alignment:
Q  96 aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgc--atgttgattcctccaatgaa 193  Q
    ||||||| || ||| |||||| ||||||||| ||||||||||||| ||||| ||||| | |||||||| ||| |||||  ||||||  ||||||||| ||    
T  13883007 aaaccctcctgcatcagtctcgtccacctctaaagaactcgaccc-gagttctcattctaataaagagattctcatgcatatgttggctcctccaataaa 13883105  T
Q  194 caagagaccacc 205  Q
    ||||||||||||    
T  13883106 caagagaccacc 13883117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 201
Target Start/End: Complemental strand, 11228552 - 11228430
Alignment:
Q  79 actataaaattaccaag-aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgt 177  Q
    ||||||||||||| | | ||||| | |||||| ||||| |||| ||||| ||||||| | ||| ||||| ||||| | |||||||  ||||||||||||     
T  11228552 actataaaattactatggaaaccatcctacatcagtcttctcc-cctcttaagaacttgcccccgagttctcattctaataaagaacttcccatgcatga 11228454  T
Q  178 tgattcctccaatgaacaagagac 201  Q
    ||| ||||  ||||||||||||||    
T  11228453 tgactcctataatgaacaagagac 11228430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 31636100 - 31635997
Alignment:
Q  96 aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaaca 195  Q
    ||||||| |||||| |||||||||||||||||||||||||||  | ||||| |||||| |||||||||||||||||||||||||| ||||||||||||||    
T  31636100 aaaccctcctacatcagtctcctccacctctgaagaactcgaatccgagttctcatttagataaagagtttcccatgcatgttgactcctccaatgaaca 31636001  T
Q  196 agag 199  Q
    ||||    
T  31636000 agag 31635997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 280285 - 280385
Alignment:
Q  95 gaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaac 194  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||| |||||||||||| |||||||||||||    
T  280285 gaaactcttctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttcacatgcatgttgaatcctccaatgaac 280384  T
Q  195 a 195  Q
    |    
T  280385 a 280385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 79 - 205
Target Start/End: Complemental strand, 35682037 - 35681910
Alignment:
Q  79 actataaaattaccaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgt 177  Q
    ||||||||||||| |||||| |||| || ||| ||||||||||||||||||||||||||||||  |||| || || |||||||||| || | ||||||||    
T  35682037 actataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccaagttctctttctgataaagagctttctatgcatgt 35681938  T
Q  178 tgattcctccaatgaacaagagaccacc 205  Q
    ||| |||| |||||||||||||||||||    
T  35681937 tgactccttcaatgaacaagagaccacc 35681910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 32162248 - 32162347
Alignment:
Q  105 tacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaacaagagaccac 204  Q
    ||||||||||||||||| ||||||| ||||| |||  ||||| ||||| |||||||||| |||||||||||||||| | ||| |||||||||||||||||    
T  32162248 tacattagtctcctccatctctgaaaaactcaaccttgagttctcattctgataaagagcttcccatgcatgttgact-ctctaatgaacaagagaccac 32162346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 95 - 205
Target Start/End: Complemental strand, 33053234 - 33053125
Alignment:
Q  95 gaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaac 194  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| | ||| | ||| | |||||||| ||| ||| ||||| || ||||| ||| |||    
T  33053234 gaaacccttctacatcagtctcctccacctctgaagaactcgaccccg-gttcttattctaataaagagcttctcattcatgtcgactcctctaataaac 33053136  T
Q  195 aagagaccacc 205  Q
    |||||||||||    
T  33053135 aagagaccacc 33053125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 27952649 - 27952721
Alignment:
Q  96 aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcc 168  Q
    ||||||| |||||| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||||    
T  27952649 aaaccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttcc 27952721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 2165707 - 2165624
Alignment:
Q  79 actataaaattaccaag-aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaag 161  Q
    ||||||||||||| ||| |||| || |||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  2165707 actataaaattactaaggaaactctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 2165624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 205
Target Start/End: Complemental strand, 22011197 - 22011088
Alignment:
Q  96 aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaaca 195  Q
    ||||||| || ||| | |||||||||||||| ||||||||||||| ||||| ||||| | ||||||| |||| |||| ||||||| |||| | |||||||    
T  22011197 aaaccctcctgcatcactctcctccacctctaaagaactcgaccctgagttctcattctaataaagaatttctcatgtatgttgactccttcgatgaaca 22011098  T
Q  196 agagaccacc 205  Q
    ||| ||||||    
T  22011097 agataccacc 22011088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 18945739 - 18945657
Alignment:
Q  123 ctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaacaagagaccacc 205  Q
    ||||||| ||||||| || || || ||||| |||| ||||||||| ||| |||||| | |||| |||||||||||||||||||    
T  18945739 ctctgaaaaactcgatcccgaattctcattctgattaagagtttctcattcatgttaactcctgcaatgaacaagagaccacc 18945657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 23457462 - 23457411
Alignment:
Q  84 aaaattaccaagaaacccttctacattagtctcctccacctctgaagaactc 135  Q
    |||||||| |||||| ||| |||||| |||| ||||||||||||||||||||    
T  23457462 aaaattactaagaaaacctcctacatcagtcgcctccacctctgaagaactc 23457411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 79 - 269
Target Start/End: Complemental strand, 10927935 - 10927746
Alignment:
Q  79 actataaaattaccaag-aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgt 177  Q
    ||||||||||||| ||| ||||||| |||||  |||||||||||| ||||||||||||||||| ||||| ||||| | |||||||||||| |||||| ||    
T  10927935 actataaaattactaaggaaaccctcctacaacagtctcctccacttctgaagaactcgaccccgagttctcattctaataaagagtttctcatgcaagt 10927836  T
Q  178 tgattcctccaatgaacaagagaccaccacctcctcttcccattgaaaaaatgtggtagcatgccggatactttctagatccatcattttac 269  Q
    ||| || | |||| ||||||||||| || |||     |||||||||| |||||| ||| ||||||| |||||||||||||||  ||||||||    
T  10927835 tgactcttacaataaacaagagaccccctcct--agatcccattgaagaaatgtagtaacatgccgaatactttctagatcctccattttac 10927746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 104 - 200
Target Start/End: Complemental strand, 10927001 - 10926905
Alignment:
Q  104 ctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaacaagaga 200  Q
    |||||| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||  |||||||||||||||| |||||||||||| ||||||    
T  10927001 ctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagaacttcccatgcatgttgactcctccaatgaataagaga 10926905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 205
Target Start/End: Complemental strand, 23989056 - 23988929
Alignment:
Q  79 actataaaattaccaag-aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgt 177  Q
    ||||| ||||||| ||| ||||||| ||||||||||||||| ||||||||||||||||||||  ||||| || ||||| ||||||| ||||| |||||||    
T  23989056 actatgaaattactaaggaaaccctcctacattagtctcctacacctctgaagaactcgaccttgagttctcgttttggtaaagagcttcccttgcatgt 23988957  T
Q  178 tgattcctccaatgaacaagagaccacc 205  Q
    | | |||| |||||| ||||||| ||||    
T  23988956 taactccttcaatgagcaagagatcacc 23988929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 13441913 - 13442015
Alignment:
Q  96 aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaaca 195  Q
    |||||||||| ||| |||||||||||||||||||||| |||| |   |||| ||||| |||||||||| |||||||||||||||| ||||||||||| ||    
T  13441913 aaacccttctgcatcagtctcctccacctctgaagaattcgatca--agttctcattctgataaagagcttcccatgcatgttgactcctccaatgagca 13442010  T
Q  196 agaga 200  Q
    |||||    
T  13442011 agaga 13442015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 8966032 - 8966091
Alignment:
Q  104 ctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagag 163  Q
    |||||| |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||    
T  8966032 ctacatcagtctcctccacctctgaagaactcgaccctgagttctcattctgataaagag 8966091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 197
Target Start/End: Complemental strand, 40805664 - 40805571
Alignment:
Q  104 ctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaacaag 197  Q
    |||||| |||||||||||||| | ||||| ||||||| ||||| |  || |||||| ||||||| |||||||| ||| |||||| |||||||||    
T  40805664 ctacatcagtctcctccacctttaaagaagtcgaccccgagttcttgttctgataaggagtttcacatgcatgatgactcctccgatgaacaag 40805571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 31915332 - 31915245
Alignment:
Q  114 ctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgca-tgttgattcctccaatgaacaagagac 201  Q
    |||||||||||||||||||||| |||| ||||| || || | || |||||||| |||| || |||||| ||||||||||||||||||||    
T  31915332 ctcctccacctctgaagaactcaaccccgagttctcgttctaat-aagagttttccattcattgttgactcctccaatgaacaagagac 31915245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 31915176 - 31915123
Alignment:
Q  215 tcccattgaaaaaatgtggtagcatgccggatactttctagatccatcatttta 268  Q
    |||||||||| |||||  ||||||||| | ||| ||||||||||||||||||||    
T  31915176 tcccattgaagaaatgcagtagcatgctgaatattttctagatccatcatttta 31915123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 40805497 - 40805444
Alignment:
Q  215 tcccattgaaaaaatgtggtagcatgccggatactttctagatccatcatttta 268  Q
    |||||||||| |||||| ||||||||| | |||| ||||| |||||||||||||    
T  40805497 tcccattgaagaaatgtagtagcatgctgaatacattctaaatccatcatttta 40805444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 205
Target Start/End: Original strand, 21845196 - 21845323
Alignment:
Q  79 actataaaattaccaagaaacccttcta-cattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgt 177  Q
    ||||||||||||| |||||| || |||  ||| |||||  ||||||||||||||||||||||| ||||| ||||| |||||||||| |||||||||||||    
T  21845196 actataaaattactaagaaaaccctcttgcatcagtctgttccacctctgaagaactcgaccccgagttctcattctgataaagagcttcccatgcatgt 21845295  T
Q  178 tgattcctccaatgaacaagagaccacc 205  Q
    ||| ||||||||||||||||| ||||||    
T  21845296 tgactcctccaatgaacaagaaaccacc 21845323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 95 - 205
Target Start/End: Complemental strand, 18252234 - 18252124
Alignment:
Q  95 gaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaac 194  Q
    |||||||| || ||| || |||||| |||||||||||||| ||||| ||||| ||||| ||||||| || || |||||||||| || |||||||||| ||    
T  18252234 gaaaccctcctgcatcagcctcctctacctctgaagaacttgaccccgagttctcattatgataaacagctttccatgcatgtggactcctccaatggac 18252135  T
Q  195 aagagaccacc 205  Q
    |||||||||||    
T  18252134 aagagaccacc 18252124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 19677629 - 19677684
Alignment:
Q  106 acattagtctcctccacctctgaagaactcgacccggagttttcattttgataaag 161  Q
    |||| |||||||||||||||||||||||||||||| ||||| |||| || ||||||    
T  19677629 acatcagtctcctccacctctgaagaactcgaccccgagttctcatctttataaag 19677684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 111 - 205
Target Start/End: Complemental strand, 22716412 - 22716318
Alignment:
Q  111 agtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaacaagagaccacc 205  Q
    ||||||||||| |||| ||||||||||||| ||||| |||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||    
T  22716412 agtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgttgactcctccaatgaacaagagaccacc 22716318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 22988805 - 22988899
Alignment:
Q  111 agtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaacaagagaccacc 205  Q
    ||||||||||| |||| ||||||||||||| ||||| |||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||    
T  22988805 agtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgttgactcctccaatgaacaagagaccacc 22988899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 6659640 - 6659751
Alignment:
Q  83 taaaattaccaagaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgatt 182  Q
    ||||||||| |||||||||| |||||| ||||||||| ||||||||||||||||||||  | || |||| ||||||||||| |||||||| || |||| |    
T  6659640 taaaattactaagaaaccctcctacatcagtctcctctacctctgaagaactcgaccc-aaattctcatcttgataaagagcttcccatgaatattgact 6659738  T
Q  183 cctccaatgaaca 195  Q
    ||||||| |||||    
T  6659739 cctccaaagaaca 6659751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 201
Target Start/End: Complemental strand, 7635093 - 7634998
Alignment:
Q  106 acattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaacaagagac 201  Q
    |||| ||||||||||| ||||||||||||||||||  | || ||||| | ||||| || | |||||||||||||| |||||| |||||||||||||    
T  7635093 acatcagtctcctccatctctgaagaactcgaccccaaattctcattctaataaaaagctccccatgcatgttgactcctccgatgaacaagagac 7634998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 205
Target Start/End: Complemental strand, 10494738 - 10494628
Alignment:
Q  95 gaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaac 194  Q
    ||||||||  ||||| ||||| ||| || ||||||||||||||||   |||| | ||  ||||||| || ||||||||||||| || |||||||||||||    
T  10494738 gaaaccctcatacatcagtcttctctacttctgaagaactcgacctcaagttctgatcctgataaatagcttcccatgcatgtcgactcctccaatgaac 10494639  T
Q  195 aagagaccacc 205  Q
    |||||||||||    
T  10494638 aagagaccacc 10494628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 13085420 - 13085483
Alignment:
Q  98 acccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaag 161  Q
    ||||| |||||| |||||| |||| |||||||||||||||||| ||||| |||| |||||||||    
T  13085420 accctcctacatcagtctcttccatctctgaagaactcgaccccgagttctcatcttgataaag 13085483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 10494562 - 10494509
Alignment:
Q  215 tcccattgaaaaaatgtggtagcatgccggatactttctagatccatcatttta 268  Q
    |||||||||| |||||| | ||||||| |  |||||||||||||||||||||||    
T  10494562 tcccattgaagaaatgtagaagcatgctgagtactttctagatccatcatttta 10494509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 205
Target Start/End: Original strand, 365892 - 365983
Alignment:
Q  113 tctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaacaagagaccacc 205  Q
    |||||||||||||||||||||||||||  ||||| || ||||||||||||| || ||||| ||||||| || ||||||||||| |||||||||    
T  365892 tctcctccacctctgaagaactcgacctcgagttctcgttttgataaagagctt-ccatgtatgttgactcttccaatgaacaggagaccacc 365983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 205
Target Start/End: Original strand, 8536654 - 8536764
Alignment:
Q  95 gaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaac 194  Q
    |||||||| |||||| || ||| ||||||||| ||||||||||| | ||||| | ||| ||||||| |||||| |||  ||||||| || ||||||||||    
T  8536654 gaaaccctcctacatcagcctcttccacctctaaagaactcgactccgagttcttattctgataaaaagtttctcatatatgttgactcttccaatgaac 8536753  T
Q  195 aagagaccacc 205  Q
    |||||| ||||    
T  8536754 aagagatcacc 8536764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 3064063 - 3064113
Alignment:
Q  96 aaacccttctacattagtctcctccacctctgaagaactcgacccggagtt 146  Q
    ||||||| || ||| |||||||||||||||||||||||||||||| |||||    
T  3064063 aaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagtt 3064113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 3064181 - 3064234
Alignment:
Q  215 tcccattgaaaaaatgtggtagcatgccggatactttctagatccatcatttta 268  Q
    |||||||||| | |||| ||||||| ||  ||||||||||||||||||||||||    
T  3064181 tcccattgaacatatgtagtagcataccaaatactttctagatccatcatttta 3064234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 45922 - 46005
Alignment:
Q  79 actataaaattaccaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaag 161  Q
    ||||||||||||| ||| || |||| |||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  45922 actataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 46005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 10464 - 10359
Alignment:
Q  96 aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaaca 195  Q
    ||||||| |||||| |||||| ||||||||| | ||| | |||||  |||| ||||| |||||||||| |||||||| || |||| ||||||||||||||    
T  10464 aaaccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgaatattgactcctccaatgaaca 10365  T
Q  196 agagac 201  Q
    ||||||    
T  10364 agagac 10359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 205
Target Start/End: Complemental strand, 49128 - 49018
Alignment:
Q  95 gaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgat-aaagagtttcccatgcatgttgattcctccaatgaa 193  Q
    ||||| || |||||| ||||||||||||||||||||||||| |||| ||||| | ||| |||| |||||  || ||||||||||||| || ||| |||||    
T  49128 gaaactctcctacatcagtctcctccacctctgaagaactcaaccccgagttcttattctgataaaagaactt-ccatgcatgttgactcttcctatgaa 49030  T
Q  194 caagagaccacc 205  Q
    || |||| ||||    
T  49029 cacgagaacacc 49018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 37520 - 37484
Alignment:
Q  104 ctacattagtctcctccacctctgaagaactcgaccc 140  Q
    |||||| ||||||||||||||||||||||||||||||    
T  37520 ctacatcagtctcctccacctctgaagaactcgaccc 37484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 145547 - 145442
Alignment:
Q  96 aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgca-tgttgattcctccaatgaac 194  Q
    ||||||| |||||| ||||||||||||||| |||||||| ||||| ||||| | ||| ||||||||||||  || | || |||||| |||| ||||||||    
T  145547 aaaccctcctacatcagtctcctccacctcagaagaacttgaccc-gagttattattctgataaagagttgtccgttcattgttgactccttcaatgaac 145449  T
Q  195 aagagac 201  Q
    |||||||    
T  145448 aagagac 145442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 144354 - 144407
Alignment:
Q  215 tcccattgaaaaaatgtggtagcatgccggatactttctagatccatcatttta 268  Q
    |||||||||| |||||| ||||||||||| ||||  |||| |||||||||||||    
T  144354 tcccattgaagaaatgtagtagcatgccgaatacgctctaaatccatcatttta 144407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 15758 - 15709
Alignment:
Q  156 ataaagagtttcccatgcatgttgattcctccaatgaacaagagaccacc 205  Q
    |||||||  ||| |||||||||||| |||||||||||||| |||||||||    
T  15758 ataaagaacttctcatgcatgttgactcctccaatgaacaggagaccacc 15709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University