View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15760_low_1 (Length: 899)

Name: NF15760_low_1
Description: NF15760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15760_low_1
NF15760_low_1
[»] chr6 (1 HSPs)
chr6 (20-640)||(2310556-2311188)


Alignment Details
Target: chr6 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 20 - 640
Target Start/End: Complemental strand, 2311188 - 2310556
Alignment:
Q  20 ccagttaaaggtttttgtctat--atagtgtgtgcactactgtgtattgtatacttgaggctgtagggagcataaaattgtgacatgtcaaaagtagaat 117  Q
    |||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2311188 ccagttaaaggtttgtgtctatctatagtgtgtgcactactgtgtattgtatacttgaggctgtaggaagcataaaattgtgacatgtcaaaagtagaat 2311089  T
Q  118 tatgtgaagtgatgatgtgtcgatgaataataatactgtagatagatattgttgaaccga-aaaagtaaatcaaattattaagcaaacagattcaaatag 216  Q
    ||||||||||||| ||||||  |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||    
T  2311088 tatgtgaagtgatcatgtgttcatgaataataatactgtagacaaatattgttgaaccgaaaaaagtaaatcaaattatcaagcaaatagattcaaatag 2310989  T
Q  217 atggtcacacaacatcaaggtgttttttattccccaacatatgtggggcatctgctaggtagttaaattcaaaattaataaaacagaattccaaaaatga 316  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  2310988 atggtcacacaacatcaaggtgttttttattccccaacaaatgtggggcatctgctaggtagttaaattc-aaattaataaaacagaatttcaaaaatga 2310890  T
Q  317 taaaatatgaaatgca----------agcaaacagcttcagatcacagcttctcttcatcctcgccaactgcaaaagtaagataaaatttataaaacttc 406  Q
    ||||||||||||||||          ||||| |||||||||||||||||||||||||| ||||  || ||||||||||||||||||||||||||||||||    
T  2310889 taaaatatgaaatgcaacatggtagtagcaaccagcttcagatcacagcttctcttcaccctcctcatctgcaaaagtaagataaaatttataaaacttc 2310790  T
Q  407 tattctatgttcgcctgccaattacagatatgcaaaaacgtatatgcaaagctacttcttggtggtttaaattttcaaataaataaacattgatcgcaag 506  Q
    |||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2310789 tattctatgtccccctggcaattacagatatgcaaaaacgtatatgcaaagctacttcttggtggtttaaattttcaaataaataaacattgatcgcaag 2310690  T
Q  507 taattgaaaagagagaaatgagaaaagtcaaaagagctctaaccaaggttagcttgaacggccttgcctgctgccttaatagcaccattgttatttccct 606  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||  || || |||||||||   ||||| ||||||||||||| |||||  |||||    
T  2310689 taattgaaaagagagaaatgagaaaagtcaaaatagctctaaccaagggcagatttaacggccttctgtgctgtcttaatagcaccaatgttacatccct 2310590  T
Q  607 taaacattaaaataaaataataaattattagttt 640  Q
    ||||||||||||||||||||||||||||||||||    
T  2310589 taaacattaaaataaaataataaattattagttt 2310556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University