View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15760_low_2 (Length: 574)
Name: NF15760_low_2
Description: NF15760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15760_low_2 |
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| [»] chr2 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 566; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 1 - 574
Target Start/End: Original strand, 4982051 - 4982624
Alignment:
| Q |
1 |
aaagtatgaggtaggacgcatgcttggccaaggaagttttgccaaagtttaccatgcaaggaacttaaagacaggacaaaatgttgctatcaaggtgttc |
100 |
Q |
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| T |
4982051 |
aaagtatgaggtaggacgcatgcttggccaaggaagttttgccaaagtttaccatgcaaggaacttaaagacaggacaaaatgttgctatcaaggtgttc |
4982150 |
T |
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| Q |
101 |
gacaaagcgatgatcatgaaagtcggtttgaaggagcaaatcaagcgtgaaatctcggttatgcgtcttgttcgacaccctaacattgtcgaattctacg |
200 |
Q |
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| T |
4982151 |
gacaaagcgatgatcatgaaagtcggtttgaaggagcaaatcaagcgtgaaatctcggttatgcgtcttgttcgacaccctaacattgtcgaattctacg |
4982250 |
T |
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| Q |
201 |
aggtcatggcaagcaaaacaaagatatattttgcaatggaacaagtgaaaggtggcgagcttttccataaagtgtctcgagggaagctgagggaagatat |
300 |
Q |
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| T |
4982251 |
aggtcatggcaagcaaaacaaagatatattttgcaatggaacaagtgaaaggtggcgagcttttccataaagtgtctcgagggaagctgagggaagatat |
4982350 |
T |
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| Q |
301 |
ggctaggaaatatttccagcaacttattgcagctgttgatcattgtcatagaagagggatttatcatcgcgaccttaaaccagaaaatcttctccttgac |
400 |
Q |
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| T |
4982351 |
ggctaggaaatatttccagcaacttattgcagctgttgatcattgtcatagaagagggatttatcatcgcgaccttaaaccagaaaatcttctcctcgac |
4982450 |
T |
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| Q |
401 |
gaaaatggtaaccttaaagttgctgattttggtcttagtgcattgttggaatcaaaaaagaaagacgatcttcttcatacaacatgcggtactccagctt |
500 |
Q |
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| T |
4982451 |
gaaaatggtaaccttaaagttgctgattttggtcttagtgcattgttggaatcaaaaaaaaaagacgatcttcttcatacaacatgcggtactccagctt |
4982550 |
T |
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| Q |
501 |
atgtagcacctgagattatcaggaagaaaggttatgatggagccaaggcagatatttggtcttgtggtgttatt |
574 |
Q |
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| T |
4982551 |
atgtagcacctgagattatcaggaagaaaggttatgatggagccaaggcagatatttggtcttgtggtgttatt |
4982624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 574
Target Start/End: Complemental strand, 45268353 - 45268270
Alignment:
| Q |
491 |
actccagcttatgtagcacctgagattatcaggaagaaaggttatgatggagccaaggcagatatttggtcttgtggtgttatt |
574 |
Q |
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| T |
45268353 |
actcctgcttatgttgcacctgaagttttgaagaagattggttatgatggatcaaaagctgatatttggtcttgtggtgttatt |
45268270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 35828027 - 35828073
Alignment:
| Q |
395 |
cttgacgaaaatggtaaccttaaagttgctgattttggtcttagtgc |
441 |
Q |
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| T |
35828027 |
cttgatgaaaaaggtaaccttaaagtttcagattttggtcttagtgc |
35828073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 476 - 574
Target Start/End: Original strand, 54659665 - 54659763
Alignment:
| Q |
476 |
catacaacatgcggtactccagcttatgtagcacctgagattatcaggaagaaaggttatgatggagccaaggcagatatttggtcttgtggtgttatt |
574 |
Q |
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| T |
54659665 |
cataccacatgtggtactccggcgtatgtttcgccggaggttatcgcgaagaagggttacgacggtgctaaggctgatatttggtcttgtggtgttatt |
54659763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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