View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15761_high_11 (Length: 337)

Name: NF15761_high_11
Description: NF15761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15761_high_11
NF15761_high_11
[»] chr4 (29 HSPs)
chr4 (224-327)||(6083218-6083321)
chr4 (172-211)||(1621874-1621913)
chr4 (287-327)||(18882348-18882388)
chr4 (173-211)||(10472497-10472535)
chr4 (173-211)||(11785974-11786012)
chr4 (173-211)||(11798141-11798179)
chr4 (173-211)||(13635753-13635791)
chr4 (289-327)||(46481389-46481427)
chr4 (173-211)||(49492540-49492578)
chr4 (173-211)||(55765481-55765519)
chr4 (176-208)||(20861583-20861615)
chr4 (177-213)||(38010145-38010181)
chr4 (180-211)||(805109-805140)
chr4 (175-210)||(38244946-38244981)
chr4 (172-211)||(49426085-49426124)
chr4 (173-211)||(15051164-15051202)
chr4 (167-209)||(26578219-26578261)
chr4 (173-211)||(27865765-27865803)
chr4 (173-211)||(30597699-30597737)
chr4 (173-211)||(35291576-35291614)
chr4 (173-211)||(36011843-36011881)
chr4 (173-211)||(46672439-46672477)
chr4 (173-211)||(51921293-51921331)
chr4 (166-211)||(25574156-25574201)
chr4 (290-327)||(51536170-51536207)
chr4 (287-327)||(48030310-48030350)
chr4 (287-327)||(49793088-49793128)
chr4 (173-209)||(53441320-53441356)
chr4 (287-327)||(56432515-56432555)
[»] chr6 (13 HSPs)
chr6 (17-67)||(10357973-10358023)
chr6 (174-213)||(34870112-34870151)
chr6 (173-211)||(1449542-1449580)
chr6 (172-207)||(15493173-15493208)
chr6 (172-211)||(31216661-31216700)
chr6 (176-211)||(30908655-30908690)
chr6 (173-211)||(1536924-1536962)
chr6 (173-211)||(7089082-7089120)
chr6 (278-327)||(287414-287463)
chr6 (290-327)||(12106064-12106101)
chr6 (176-208)||(7764444-7764476)
chr6 (197-225)||(15493327-15493355)
chr6 (287-327)||(34915543-34915583)
[»] chr3 (22 HSPs)
chr3 (75-172)||(11821193-11821291)
chr3 (170-211)||(9596008-9596049)
chr3 (172-211)||(30947939-30947978)
chr3 (176-211)||(51846808-51846843)
chr3 (173-211)||(9106267-9106305)
chr3 (173-211)||(26662566-26662604)
chr3 (174-211)||(33414041-33414078)
chr3 (287-327)||(1111648-1111688)
chr3 (171-211)||(47335030-47335070)
chr3 (172-211)||(6097712-6097751)
chr3 (172-211)||(19284670-19284709)
chr3 (176-211)||(34563375-34563410)
chr3 (176-211)||(41192378-41192413)
chr3 (172-211)||(54379162-54379201)
chr3 (173-211)||(3475435-3475473)
chr3 (185-223)||(33413899-33413937)
chr3 (173-211)||(46237786-46237824)
chr3 (290-327)||(9582243-9582280)
chr3 (171-207)||(2941958-2941994)
chr3 (197-225)||(19284824-19284852)
chr3 (287-327)||(24087335-24087375)
chr3 (197-225)||(34562392-34562420)
[»] scaffold0074 (2 HSPs)
scaffold0074 (167-207)||(24268-24308)
scaffold0074 (173-224)||(44776-44826)
[»] chr8 (18 HSPs)
chr8 (171-211)||(19784269-19784309)
chr8 (173-211)||(41451105-41451143)
chr8 (288-327)||(26625791-26625830)
chr8 (172-208)||(7857679-7857715)
chr8 (171-211)||(34648156-34648196)
chr8 (176-211)||(9852273-9852308)
chr8 (172-211)||(15227029-15227068)
chr8 (180-211)||(23396484-23396515)
chr8 (176-211)||(40023290-40023325)
chr8 (288-327)||(40784889-40784928)
chr8 (173-211)||(10237354-10237392)
chr8 (289-327)||(29321294-29321332)
chr8 (173-211)||(30413914-30413952)
chr8 (173-211)||(41099182-41099220)
chr8 (173-211)||(43690640-43690678)
chr8 (287-324)||(36408412-36408449)
chr8 (171-211)||(2522865-2522905)
chr8 (173-213)||(40012208-40012247)
[»] chr5 (14 HSPs)
chr5 (77-172)||(19110566-19110662)
chr5 (172-211)||(37456679-37456718)
chr5 (173-211)||(3884063-3884101)
chr5 (173-211)||(26637865-26637903)
chr5 (173-211)||(30783435-30783473)
chr5 (170-211)||(15416661-15416702)
chr5 (288-327)||(16926450-16926489)
chr5 (173-211)||(13552983-13553021)
chr5 (173-211)||(14394468-14394506)
chr5 (289-327)||(27873345-27873383)
chr5 (286-327)||(8949808-8949849)
chr5 (197-225)||(14394621-14394649)
chr5 (173-213)||(16552665-16552705)
chr5 (183-223)||(37456820-37456859)
[»] chr2 (16 HSPs)
chr2 (169-209)||(8149827-8149867)
chr2 (169-209)||(8154451-8154491)
chr2 (172-211)||(2263572-2263611)
chr2 (173-211)||(7487282-7487320)
chr2 (171-211)||(39355033-39355073)
chr2 (172-211)||(15016594-15016633)
chr2 (180-211)||(21155441-21155472)
chr2 (180-211)||(27974299-27974330)
chr2 (180-211)||(28060828-28060859)
chr2 (176-211)||(41346068-41346103)
chr2 (173-211)||(9143585-9143623)
chr2 (289-327)||(17665522-17665560)
chr2 (173-211)||(18762867-18762905)
chr2 (290-327)||(10399462-10399499)
chr2 (287-327)||(25624730-25624770)
chr2 (175-211)||(34464713-34464749)
[»] scaffold0571 (1 HSPs)
scaffold0571 (172-211)||(704-743)
[»] scaffold0045 (1 HSPs)
scaffold0045 (172-211)||(33683-33722)
[»] scaffold0581 (1 HSPs)
scaffold0581 (172-210)||(8450-8488)
[»] chr7 (16 HSPs)
chr7 (173-211)||(763697-763735)
chr7 (173-211)||(16933272-16933310)
chr7 (173-211)||(16938655-16938693)
chr7 (287-327)||(9140533-9140573)
chr7 (167-211)||(46358514-46358558)
chr7 (176-211)||(24359874-24359909)
chr7 (296-327)||(41787256-41787287)
chr7 (172-211)||(41911137-41911176)
chr7 (176-210)||(11732676-11732710)
chr7 (173-211)||(20000702-20000740)
chr7 (173-211)||(30884250-30884288)
chr7 (173-211)||(31660069-31660107)
chr7 (289-327)||(38736450-38736488)
chr7 (287-327)||(25950828-25950868)
chr7 (197-225)||(31660222-31660250)
chr7 (171-211)||(47340144-47340184)
[»] chr1 (21 HSPs)
chr1 (173-211)||(6314115-6314153)
chr1 (173-211)||(20434750-20434788)
chr1 (172-211)||(50351802-50351841)
chr1 (173-211)||(4097936-4097974)
chr1 (173-211)||(25889056-25889094)
chr1 (173-211)||(49936965-49937003)
chr1 (176-209)||(20507311-20507344)
chr1 (176-213)||(31083365-31083402)
chr1 (176-208)||(23175553-23175585)
chr1 (172-211)||(11421593-11421632)
chr1 (176-211)||(21256800-21256835)
chr1 (172-211)||(24635925-24635964)
chr1 (180-211)||(37228372-37228403)
chr1 (172-211)||(48762359-48762398)
chr1 (173-211)||(19897788-19897826)
chr1 (173-211)||(34369660-34369698)
chr1 (172-214)||(41033261-41033302)
chr1 (173-211)||(43452542-43452580)
chr1 (170-211)||(18618832-18618873)
chr1 (197-225)||(24636079-24636107)
chr1 (177-213)||(31529691-31529727)
[»] scaffold0025 (1 HSPs)
scaffold0025 (287-327)||(65637-65677)


Alignment Details
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 224 - 327
Target Start/End: Original strand, 6083218 - 6083321
Alignment:
Q  224 ccgtaaaacttcgctcgagttctctcgaaattttttcaatttcagaaaactgttatgtatcggaaatactatctccatccctaattataagacctttttg 323  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||    
T  6083218 ccgtaaaactttgctcgagttctctcgaaattttttcaatttcagaaaactgttacgtatcggaaatactatctccgtccttaattataagacctttttg 6083317  T
Q  324 agaa 327  Q
    ||||    
T  6083318 agaa 6083321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 1621874 - 1621913
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1621874 cggcaaaagttatggtgcataagccatttccttatgcacc 1621913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 18882348 - 18882388
Alignment:
Q  287 aaatactatctccatccctaattataagacctttttgagaa 327  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  18882348 aaatactatctccgtccctaattataagacctttttgagaa 18882388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 10472497 - 10472535
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  10472497 ggcaaaagttatggtgcataagtcatttccttatgcacc 10472535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 11785974 - 11786012
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  11785974 ggcaaaagttatggtgcataaaccatttccttatgcacc 11786012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 11798141 - 11798179
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  11798141 ggcaaaagttatggtgcataaaccatttccttatgcacc 11798179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 13635791 - 13635753
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  13635791 ggcaaaagttatggtgcataagtcatttccttatgcacc 13635753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 327
Target Start/End: Complemental strand, 46481427 - 46481389
Alignment:
Q  289 atactatctccatccctaattataagacctttttgagaa 327  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  46481427 atactacctccatccctaattataagacctttttgagaa 46481389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 49492578 - 49492540
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  49492578 ggcaaaagttatggtgcataagtcatttccttatgcacc 49492540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 55765481 - 55765519
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  55765481 ggcaaaagttatggtgcataagtcatttccttatgcacc 55765519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 20861583 - 20861615
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgc 208  Q
    |||||||||||||||||||||||||||||||||    
T  20861583 aaaagttatggtgcataagccatttccttatgc 20861615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 38010145 - 38010181
Alignment:
Q  177 aaagttatggtgcataagccatttccttatgcaccat 213  Q
    |||||||||||||||||| ||||||||||||||||||    
T  38010145 aaagttatggtgcataagtcatttccttatgcaccat 38010181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 211
Target Start/End: Original strand, 805109 - 805140
Alignment:
Q  180 gttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||||||||||    
T  805109 gttatggtgcataagccatttccttatgcacc 805140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 38244946 - 38244981
Alignment:
Q  175 caaaagttatggtgcataagccatttccttatgcac 210  Q
    |||||||||||||||||||||||||||||| |||||    
T  38244946 caaaagttatggtgcataagccatttccttctgcac 38244981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 49426124 - 49426085
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  49426124 cggcaaaagttatggtgcataagttatttccttatgcacc 49426085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 15051202 - 15051164
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  15051202 ggcaaaagttatggtgcataagttatttccttatgcacc 15051164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 26578261 - 26578219
Alignment:
Q  167 aaaatcggcaaaagttatggtgcataagccatttccttatgca 209  Q
    ||||| ||||||||| ||||||||||||||||||| |||||||    
T  26578261 aaaataggcaaaagtcatggtgcataagccatttctttatgca 26578219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 27865803 - 27865765
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  27865803 ggcaaaagttatagtgcataagccatttccatatgcacc 27865765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 30597699 - 30597737
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  30597699 ggcaaaagttatggtgcataagttatttccttatgcacc 30597737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 35291614 - 35291576
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  35291614 ggcaaaagttatggtgcataagttatttccttatgcacc 35291576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 36011843 - 36011881
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  36011843 ggcaaaagttatggtgcataagttatttccttatgcacc 36011881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 46672439 - 46672477
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  46672439 ggcaaaagttatggtgcataagttatttccttatgcacc 46672477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 51921331 - 51921293
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  51921331 ggcaaaagttatggtgcataagttatttccttatgcacc 51921293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 25574201 - 25574156
Alignment:
Q  166 gaaaatcggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||| |||||||||||||  |||||||| ||||||||||||||||    
T  25574201 gaaaaccggcaaaagttattatgcataagtcatttccttatgcacc 25574156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 51536170 - 51536207
Alignment:
Q  290 tactatctccatccctaattataagacctttttgagaa 327  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  51536170 tactctctccctccctaattataagacctttttgagaa 51536207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 48030310 - 48030350
Alignment:
Q  287 aaatactatctccatccctaattataagacctttttgagaa 327  Q
    |||||||  |||||||||||||||||||||| |||||||||    
T  48030310 aaatactccctccatccctaattataagacccttttgagaa 48030350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 49793088 - 49793128
Alignment:
Q  287 aaatactatctccatccctaattataagacctttttgagaa 327  Q
    |||||||| |||| ||||||||||||||||| |||||||||    
T  49793088 aaatactacctccgtccctaattataagacccttttgagaa 49793128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 53441320 - 53441356
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgca 209  Q
    ||||||||||||||||||||||  |||||||||||||    
T  53441320 ggcaaaagttatggtgcataagttatttccttatgca 53441356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 56432515 - 56432555
Alignment:
Q  287 aaatactatctccatccctaattataagacctttttgagaa 327  Q
    |||||||| |||| ||||||||||||||||| |||||||||    
T  56432515 aaatactacctccgtccctaattataagacccttttgagaa 56432555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 10358023 - 10357973
Alignment:
Q  17 atactataggacattctaataaaaatcaccttattaagaaaagttccgaga 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10358023 atactataggacattctaataaaaatcaccttattaagaaaagttccgaga 10357973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 34870151 - 34870112
Alignment:
Q  174 gcaaaagttatggtgcataagccatttccttatgcaccat 213  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34870151 gcaaaagttatggtgcataagccatttccttatgcaccat 34870112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 1449542 - 1449580
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1449542 ggcaaaagttatggtgcataagccatttccttatgcacc 1449580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 15493173 - 15493208
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatg 207  Q
    ||||||||||||||||||||||||||||||||||||    
T  15493173 cggcaaaagttatggtgcataagccatttccttatg 15493208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 31216661 - 31216700
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  31216661 cggcaaaagttatggtgcataagtcatttccttatgcacc 31216700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 30908655 - 30908690
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||| ||||||||||||||||    
T  30908655 aaaagttatggtgcataagtcatttccttatgcacc 30908690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 1536962 - 1536924
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  1536962 ggcaaaagttatggtgcataagttatttccttatgcacc 1536924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 7089082 - 7089120
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  7089082 ggcaaaagttatggtgcataagttatttccttatgcacc 7089120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 287463 - 287414
Alignment:
Q  278 atgtatcggaaatactatctccatccctaattataagacctttttgagaa 327  Q
    |||||||| || ||||  |||| |||||||||||||||||||||||||||    
T  287463 atgtatcgcaactactccctccgtccctaattataagacctttttgagaa 287414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 12106101 - 12106064
Alignment:
Q  290 tactatctccatccctaattataagacctttttgagaa 327  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  12106101 tactctctccgtccctaattataagacctttttgagaa 12106064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 7764444 - 7764476
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgc 208  Q
    ||||||||||||||||||||||||| |||||||    
T  7764444 aaaagttatggtgcataagccattttcttatgc 7764476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 15493327 - 15493355
Alignment:
Q  197 atttccttatgcaccataaccactccccc 225  Q
    |||||||||||||||||||||||||||||    
T  15493327 atttccttatgcaccataaccactccccc 15493355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 34915583 - 34915543
Alignment:
Q  287 aaatactatctccatccctaattataagacctttttgagaa 327  Q
    |||||||| |||| ||||||||||||||||| |||||||||    
T  34915583 aaatactacctccgtccctaattataagacccttttgagaa 34915543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 11821193 - 11821291
Alignment:
Q  75 ccttgtcaaatcaacaagaggctacggtggatgagatgagaccggg-gggtgttggaggttgagttggaggcgtggtctttttgtgtgggaagaaaatc 172  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||| ||    |||  || || |||||||||| | ||||||||||||||||||||||    
T  11821193 ccttgtcaaaccaacaagaggctacggtggatgatatgagaccgggaggaacgtggttgtggatttggaggcgtagactttttgtgtgggaagaaaatc 11821291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 9596049 - 9596008
Alignment:
Q  170 atcggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  9596049 atcggcaaaagttatggtgcataagctatttccttatgcacc 9596008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 30947978 - 30947939
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  30947978 cggcaaaagttatggtgcataagtcatttccttatgcacc 30947939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 51846843 - 51846808
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||||||||||||||    
T  51846843 aaaagttatggtgcataagccatttccttatgcacc 51846808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 9106267 - 9106305
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  9106267 ggcaaaagttatggtgcataagtcatttccttatgcacc 9106305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 26662604 - 26662566
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  26662604 ggcaaaagttattgtgcataagccatttccttatgcacc 26662566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 33414078 - 33414041
Alignment:
Q  174 gcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  33414078 gcaaaagttatggtgcataagtcatttccttatgcacc 33414041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 1111688 - 1111648
Alignment:
Q  287 aaatactatctccatccctaattataagacctttttgagaa 327  Q
    ||||||||||||| ||||||||||||||||| |||||||||    
T  1111688 aaatactatctccgtccctaattataagacccttttgagaa 1111648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 47335030 - 47335070
Alignment:
Q  171 tcggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  47335030 tcggcaaaagttatggtgcataagttatttccttatgcacc 47335070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 6097751 - 6097712
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  6097751 cggcaaaagttatggtgcataagttatttccttatgcacc 6097712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 19284670 - 19284709
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  19284670 cggcaaaagttatggtgcataagttatttccttatgcacc 19284709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 34563410 - 34563375
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||| ||||||||||    
T  34563410 aaaagttatggtgcataagccattttcttatgcacc 34563375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 41192413 - 41192378
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||| ||||||||||||||||    
T  41192413 aaaagttatggtgcataagtcatttccttatgcacc 41192378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 54379162 - 54379201
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  54379162 cggcaaaagttatggtgcataagttatttccttatgcacc 54379201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 3475473 - 3475435
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  3475473 ggcaaaagttatggtgcataagttatttccttatgcacc 3475435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 33413937 - 33413899
Alignment:
Q  185 ggtgcataagccatttccttatgcaccataaccactccc 223  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  33413937 ggtgcataagggatttccttatgcaccataaccactccc 33413899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 46237824 - 46237786
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  46237824 ggcaaaagttatggtgcataagttatttccttatgcacc 46237786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 9582243 - 9582280
Alignment:
Q  290 tactatctccatccctaattataagacctttttgagaa 327  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  9582243 tactacctccatccctaattataagacccttttgagaa 9582280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 2941994 - 2941958
Alignment:
Q  171 tcggcaaaagttatggtgcataagccatttccttatg 207  Q
    ||||||||||||||||||||||||  |||||||||||    
T  2941994 tcggcaaaagttatggtgcataagttatttccttatg 2941958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 19284824 - 19284852
Alignment:
Q  197 atttccttatgcaccataaccactccccc 225  Q
    |||||||||||||||||||||||||||||    
T  19284824 atttccttatgcaccataaccactccccc 19284852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 24087375 - 24087335
Alignment:
Q  287 aaatactatctccatccctaattataagacctttttgagaa 327  Q
    |||||||| |||| ||||||||||||||||| |||||||||    
T  24087375 aaatactacctccgtccctaattataagacccttttgagaa 24087335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 34562420 - 34562392
Alignment:
Q  197 atttccttatgcaccataaccactccccc 225  Q
    |||||||||||||||||||||||||||||    
T  34562420 atttccttatgcaccataaccactccccc 34562392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 24268 - 24308
Alignment:
Q  167 aaaatcggcaaaagttatggtgcataagccatttccttatg 207  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24268 aaaatcggcaaaagttatggtgcataagccatttccttatg 24308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 44826 - 44776
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcaccataaccactcccc 224  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  44826 ggcaaaagttatggtgcataaga-atttccttatgcaccataaccactcccc 44776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 19784269 - 19784309
Alignment:
Q  171 tcggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19784269 tcggcaaaagttatggtgcataagccatttccttatgcacc 19784309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 41451105 - 41451143
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41451105 ggcaaaagttatggtgcataagccatttccttatgcacc 41451143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 327
Target Start/End: Original strand, 26625791 - 26625830
Alignment:
Q  288 aatactatctccatccctaattataagacctttttgagaa 327  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  26625791 aatactacctccatccctaattataagacctttttgagaa 26625830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 7857679 - 7857715
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgc 208  Q
    ||||||||||||||||||||||||||||| |||||||    
T  7857679 cggcaaaagttatggtgcataagccattttcttatgc 7857715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 34648196 - 34648156
Alignment:
Q  171 tcggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  34648196 tcgggaaaagttatggtgcataagtcatttccttatgcacc 34648156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 9852273 - 9852308
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||| ||||||||||||||||    
T  9852273 aaaagttatggtgcataagtcatttccttatgcacc 9852308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 15227029 - 15227068
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  15227029 cggcaaaagttatggtgcataagttatttccttatgcacc 15227068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 211
Target Start/End: Original strand, 23396484 - 23396515
Alignment:
Q  180 gttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||||||||||    
T  23396484 gttatggtgcataagccatttccttatgcacc 23396515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 40023325 - 40023290
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||||||||| ||||    
T  40023325 aaaagttatggtgcataagccatttccttatacacc 40023290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 327
Target Start/End: Original strand, 40784889 - 40784928
Alignment:
Q  288 aatactatctccatccctaattataagacctttttgagaa 327  Q
    ||||||| |||| |||||||||||||||||||||||||||    
T  40784889 aatactacctccgtccctaattataagacctttttgagaa 40784928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 10237354 - 10237392
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  10237354 ggcaaaagttatggtgcataagttatttccttatgcacc 10237392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 327
Target Start/End: Complemental strand, 29321332 - 29321294
Alignment:
Q  289 atactatctccatccctaattataagacctttttgagaa 327  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  29321332 atactacctccatccctaattataagacccttttgagaa 29321294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 30413914 - 30413952
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  30413914 ggcaaaagttatgctgcataagtcatttccttatgcacc 30413952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 41099182 - 41099220
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  41099182 ggcaaaagttatggtgcataagttatttccttatgcacc 41099220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 43690640 - 43690678
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  43690640 ggcaaaagttatggtgcataagttatttccttatgcacc 43690678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 36408412 - 36408449
Alignment:
Q  287 aaatactatctccatccctaattataagacctttttga 324  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  36408412 aaatactacctccgtccctaattataagacctttttga 36408449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 2522865 - 2522905
Alignment:
Q  171 tcggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||  |||||||| ||||||||||||||||    
T  2522865 tcggcaaaagttattatgcataagtcatttccttatgcacc 2522905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 40012247 - 40012208
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcaccat 213  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  40012247 ggcaaaagttatggtgcataag-gatttccttatgcaccat 40012208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 172
Target Start/End: Complemental strand, 19110662 - 19110566
Alignment:
Q  77 ttgtcaaatcaacaagaggctacggtggatgagatgagaccggg-gggtgttggaggttgagttggaggcgtggtctttttgtgtgggaagaaaatc 172  Q
    |||||||| ||||||||||||||||||||||| ||||||||||| ||  | |||  || ||||||||| ||| | |||||||||| |||||||||||    
T  19110662 ttgtcaaaccaacaagaggctacggtggatgatatgagaccgggaggaaggtggttgtggagttggagacgtagactttttgtgtaggaagaaaatc 19110566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 37456679 - 37456718
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  37456679 cggcaaaagttatggtgcatgagccatttccttatgcacc 37456718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 3884101 - 3884063
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  3884101 ggcaaaagttatggtgcataagtcatttccttatgcacc 3884063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 26637903 - 26637865
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  26637903 ggcaaaagttatggtgcataagccattttcttatgcacc 26637865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 30783435 - 30783473
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  30783435 ggcaaaagttatggtgcataagtcatttccttatgcacc 30783473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 15416661 - 15416702
Alignment:
Q  170 atcggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||||  |||||||||||||||    
T  15416661 atcggcaaaagttatggtgcataagttatttccttatgcacc 15416702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 327
Target Start/End: Original strand, 16926450 - 16926489
Alignment:
Q  288 aatactatctccatccctaattataagacctttttgagaa 327  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  16926450 aatactacctccatccctaattataagacccttttgagaa 16926489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 13552983 - 13553021
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  13552983 ggcaaaagttatggtgcataagttatttccttatgcacc 13553021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 14394468 - 14394506
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  14394468 ggcaaaagttatggtgcataagttatttccttatgcacc 14394506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 327
Target Start/End: Complemental strand, 27873383 - 27873345
Alignment:
Q  289 atactatctccatccctaattataagacctttttgagaa 327  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  27873383 atactatctccgtccctaattataagacccttttgagaa 27873345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 327
Target Start/End: Original strand, 8949808 - 8949849
Alignment:
Q  286 gaaatactatctccatccctaattataagacctttttgagaa 327  Q
    ||||||||| |||| ||||||||||||||||| |||||||||    
T  8949808 gaaatactacctccgtccctaattataagacccttttgagaa 8949849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 14394621 - 14394649
Alignment:
Q  197 atttccttatgcaccataaccactccccc 225  Q
    |||||||||||||||||||||||||||||    
T  14394621 atttccttatgcaccataaccactccccc 14394649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 16552705 - 16552665
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcaccat 213  Q
    ||||||||||||  |||||||| ||||||||||||||||||    
T  16552705 ggcaaaagttattatgcataagtcatttccttatgcaccat 16552665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 37456820 - 37456859
Alignment:
Q  183 atggtgcataagccatttccttatgcaccataaccactccc 223  Q
    ||||||||||||  |||||||||||||||||||||||||||    
T  37456820 atggtgcataagg-atttccttatgcaccataaccactccc 37456859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 8149827 - 8149867
Alignment:
Q  169 aatcggcaaaagttatggtgcataagccatttccttatgca 209  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8149827 aatcggcaaaagttatggtgcataagccatttccttatgca 8149867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 8154451 - 8154491
Alignment:
Q  169 aatcggcaaaagttatggtgcataagccatttccttatgca 209  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8154451 aatcggcaaaagttatggtgcataagccatttccttatgca 8154491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 2263572 - 2263611
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  2263572 cggcaaaagttatggtgcataagccatttctttatgcacc 2263611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 7487320 - 7487282
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  7487320 ggcaaaagttatggtgcataagctatttccttatgcacc 7487282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 39355033 - 39355073
Alignment:
Q  171 tcggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  39355033 tcggcaaaagttatggtgcataagttatttccttatgcacc 39355073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 15016633 - 15016594
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  15016633 cggcaaaagttatggtgcataagttatttccttatgcacc 15016594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 211
Target Start/End: Original strand, 21155441 - 21155472
Alignment:
Q  180 gttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||||||||||    
T  21155441 gttatggtgcataagccatttccttatgcacc 21155472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 211
Target Start/End: Complemental strand, 27974330 - 27974299
Alignment:
Q  180 gttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||||||||||    
T  27974330 gttatggtgcataagccatttccttatgcacc 27974299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 211
Target Start/End: Complemental strand, 28060859 - 28060828
Alignment:
Q  180 gttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||||||||||    
T  28060859 gttatggtgcataagccatttccttatgcacc 28060828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 41346103 - 41346068
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||| ||||||||||    
T  41346103 aaaagttatggtgcataagccattttcttatgcacc 41346068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 9143585 - 9143623
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  9143585 ggcaaaagttatggtgcataagttatttccttatgcacc 9143623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 327
Target Start/End: Original strand, 17665522 - 17665560
Alignment:
Q  289 atactatctccatccctaattataagacctttttgagaa 327  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  17665522 atactagctccgtccctaattataagacctttttgagaa 17665560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 18762867 - 18762905
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  18762867 ggcaaaagttatggtgcataagttatttccttatgcacc 18762905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 10399499 - 10399462
Alignment:
Q  290 tactatctccatccctaattataagacctttttgagaa 327  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  10399499 tactacctccatccctaattataagacccttttgagaa 10399462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 25624730 - 25624770
Alignment:
Q  287 aaatactatctccatccctaattataagacctttttgagaa 327  Q
    |||||||  |||| |||||||||||||||||||||||||||    
T  25624730 aaatactccctccgtccctaattataagacctttttgagaa 25624770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 34464713 - 34464749
Alignment:
Q  175 caaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||  |||||||||||||||    
T  34464713 caaaagttatggtgcataagttatttccttatgcacc 34464749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 743 - 704
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  743 cggcaaaagttatggtgcataagccatttccttatgcacc 704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 33683 - 33722
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33683 cggcaaaagttatggtgcataagccatttccttatgcacc 33722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0581 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 8488 - 8450
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcac 210  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8488 cggcaaaagttatggtgcataagccatttccttatgcac 8450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 763697 - 763735
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||||||||||||||||||    
T  763697 ggcaaaagttatggtgcataagccatttccttatgcacc 763735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 16933310 - 16933272
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  16933310 ggcaaaagttatggtgcataagtcatttccttatgcacc 16933272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 16938693 - 16938655
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  16938693 ggcaaaagttatggtgcataagtcatttccttatgcacc 16938655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 9140573 - 9140533
Alignment:
Q  287 aaatactatctccatccctaattataagacctttttgagaa 327  Q
    ||||||||||||| ||||||||||||||||| |||||||||    
T  9140573 aaatactatctccgtccctaattataagacccttttgagaa 9140533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 46358514 - 46358558
Alignment:
Q  167 aaaatcggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||| ||||||||||||||||||||||  |||||||||||||||    
T  46358514 aaaataggcaaaagttatggtgcataagttatttccttatgcacc 46358558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 24359874 - 24359909
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||| ||||||||||||||||    
T  24359874 aaaagttatggtgcataagtcatttccttatgcacc 24359909  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 296 - 327
Target Start/End: Original strand, 41787256 - 41787287
Alignment:
Q  296 ctccatccctaattataagacctttttgagaa 327  Q
    ||||||||||||||||||||||||||||||||    
T  41787256 ctccatccctaattataagacctttttgagaa 41787287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 41911176 - 41911137
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  41911176 cggcaaaagttatggtgcataagttatttccttatgcacc 41911137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 11732710 - 11732676
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgcac 210  Q
    ||||||||||||||||||||||||| |||||||||    
T  11732710 aaaagttatggtgcataagccattttcttatgcac 11732676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 20000740 - 20000702
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  20000740 ggcaaaagttatggtgcataagtcatttacttatgcacc 20000702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 30884288 - 30884250
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  30884288 ggcaaaagttatggtgcataagttatttccttatgcacc 30884250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 31660069 - 31660107
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  31660069 ggcaaaagttatggtgcataagttatttccttatgcacc 31660107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 327
Target Start/End: Original strand, 38736450 - 38736488
Alignment:
Q  289 atactatctccatccctaattataagacctttttgagaa 327  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  38736450 atactacctccctccctaattataagacctttttgagaa 38736488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 25950828 - 25950868
Alignment:
Q  287 aaatactatctccatccctaattataagacctttttgagaa 327  Q
    |||||||| |||| ||| |||||||||||||||||||||||    
T  25950828 aaatactacctccgtccttaattataagacctttttgagaa 25950868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 31660222 - 31660250
Alignment:
Q  197 atttccttatgcaccataaccactccccc 225  Q
    |||||||||||||||||||||||||||||    
T  31660222 atttccttatgcaccataaccactccccc 31660250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 47340144 - 47340184
Alignment:
Q  171 tcggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||  |||| ||||||||||    
T  47340144 tcggcaaaagttatggtgcataagttattttcttatgcacc 47340184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 6314115 - 6314153
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6314115 ggcaaaagttatggtgcataagccatttccttatgcacc 6314153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 20434788 - 20434750
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20434788 ggcaaaagttatggtgcataagccatttccttatgcacc 20434750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 50351802 - 50351841
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  50351802 cggcaaaagttatggtgcataagtcatttccttatgcacc 50351841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 4097974 - 4097936
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  4097974 ggcaaaagttatggtgcataagctatttccttatgcacc 4097936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 25889094 - 25889056
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  25889094 ggcaaaagttatggtgcataagctatttccttatgcacc 25889056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 49937003 - 49936965
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  49937003 ggcaaaagttatggtgcataagtcatttccttatgcacc 49936965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 20507344 - 20507311
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgca 209  Q
    ||||||||||||||||||||||||||||||||||    
T  20507344 aaaagttatggtgcataagccatttccttatgca 20507311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 31083365 - 31083402
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgcaccat 213  Q
    |||||||||||||||||||||||||||||||| |||||    
T  31083365 aaaagttatggtgcataagccatttccttatgtaccat 31083402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 23175585 - 23175553
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgc 208  Q
    |||||||||||||||||||||||||||||||||    
T  23175585 aaaagttatggtgcataagccatttccttatgc 23175553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 11421593 - 11421632
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  11421593 cggcaaaagttatggtgcataaatcatttccttatgcacc 11421632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 21256835 - 21256800
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||| ||||||||||    
T  21256835 aaaagttatggtgcataagccattttcttatgcacc 21256800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 24635925 - 24635964
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  24635925 cggcaaaagttatggtgcataagttatttccttatgcacc 24635964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 211
Target Start/End: Complemental strand, 37228403 - 37228372
Alignment:
Q  180 gttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||||||||||    
T  37228403 gttatggtgcataagccatttccttatgcacc 37228372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 48762398 - 48762359
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  48762398 cggcaaaagttatggtgcataagttatttccttatgcacc 48762359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 19897826 - 19897788
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  19897826 ggcaaaagttatggtgcataagttatttccttatgcacc 19897788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 34369660 - 34369698
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  34369660 ggcaaaaattatggtgcataagccattttcttatgcacc 34369698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 41033261 - 41033302
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcaccata 214  Q
    |||||||||||||||||||||||  ||||||||||||||||||    
T  41033261 cggcaaaagttatggtgcataag-gatttccttatgcaccata 41033302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 43452542 - 43452580
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  43452542 ggcaaaagttatggtgcataagttatttccttatgcacc 43452580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 18618832 - 18618873
Alignment:
Q  170 atcggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||   |||||||||||||||    
T  18618832 atcggcaaaagttatggtgcataaattatttccttatgcacc 18618873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 24636079 - 24636107
Alignment:
Q  197 atttccttatgcaccataaccactccccc 225  Q
    |||||||||||||||||||||||||||||    
T  24636079 atttccttatgcaccataaccactccccc 24636107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 31529727 - 31529691
Alignment:
Q  177 aaagttatggtgcataagccatttccttatgcaccat 213  Q
    ||||||||  |||||||||||||||||||||||||||    
T  31529727 aaagttattatgcataagccatttccttatgcaccat 31529691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 65677 - 65637
Alignment:
Q  287 aaatactatctccatccctaattataagacctttttgagaa 327  Q
    |||||||  |||| |||||||||||||||||||||||||||    
T  65677 aaatactccctccgtccctaattataagacctttttgagaa 65637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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