View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15761_high_13 (Length: 302)
Name: NF15761_high_13
Description: NF15761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15761_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 41964759 - 41965025
Alignment:
| Q |
19 |
aaccttctaggtggtccaaaaatgagaaaatggaaaattgaaacaagtagttgtaattcttaatttcaaattaggctgttaataatataggccttgaccc |
118 |
Q |
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| T |
41964759 |
aaccttctaggtggtcaaaaaatgagaaaatggaaaattgaaacaagtagttgtaatttttaatttcaaattaggctgttaataatataggccttgaccc |
41964858 |
T |
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| Q |
119 |
ttttcattaaaaatatttgcaattgggtttttatttttaatttgttgggtctgcaaagaatgtcgtccaaacaatgtgtaacacacttgcttagtgtggt |
218 |
Q |
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| T |
41964859 |
ttttcattaaaaatatttgcaattgggtttttatttttaatttgttgggtctgcaaagaatgtcgtccaaacaatgtgtaacacacttgcttagtgtggt |
41964958 |
T |
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| Q |
219 |
tagacttaagattgactccatttgaaaaggaaaataagatggattatttgaccttgtatacaatttt |
285 |
Q |
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| T |
41964959 |
tagacttaagattgactccatttgaaaaggaaaataagatggattatttgaccttgtatacaatttt |
41965025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 1226213 - 1226428
Alignment:
| Q |
19 |
aaccttctaggtggtccaaaaatgagaaaatggaaaattgaaacaagtagttgtaattcttaatttcaaattaggctgttaataatataggccttgaccc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1226213 |
aaccttctaggtggtccaaaaatgagaaaatggaaaattgaaacaagtagttgtaatttttaatttcaaattaggctgttaataatataggccttgaccc |
1226312 |
T |
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| Q |
119 |
ttttcattaaaaatatttgcaattgggtttttatttttaatttgttgggtctgcaaagaatgtcgtccaaacaatgtgtaacacacttgcttagtgtggt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1226313 |
ttttcattaaaaatatttgcaattgggtttttatttttaatttgttgggtctgcaaagaatgtcgtccaaacaatgtgtaacacacttgcttagtgtggt |
1226412 |
T |
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| Q |
219 |
tagacttaagattgac |
234 |
Q |
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|||||||||||||||| |
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| T |
1226413 |
tagacttaagattgac |
1226428 |
T |
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