View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15761_high_14 (Length: 289)

Name: NF15761_high_14
Description: NF15761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15761_high_14
NF15761_high_14
[»] chr2 (6 HSPs)
chr2 (14-74)||(11654503-11654563)
chr2 (14-74)||(11668268-11668328)
chr2 (232-289)||(11654273-11654330)
chr2 (232-289)||(11668038-11668095)
chr2 (153-187)||(11654384-11654418)
chr2 (153-187)||(11668149-11668183)


Alignment Details
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 11654563 - 11654503
Alignment:
Q  14 agatgaagaagatggagtagacgatgagggtggtgggtttttcggtgtagaagggctttta 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11654563 agatgaagaagatggagtagacgatgagggtggtgggtttttcggtgtagaagggctttta 11654503  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 11668328 - 11668268
Alignment:
Q  14 agatgaagaagatggagtagacgatgagggtggtgggtttttcggtgtagaagggctttta 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11668328 agatgaagaagatggagtagacgatgagggtggtgggtttttcggtgtagaagggctttta 11668268  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 11654330 - 11654273
Alignment:
Q  232 gtgggttatggggagtagaaggggtagggtaatcatgtgaaggagtaggtgtagaagg 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11654330 gtgggttatggggagtagaaggggtagggtaatcatgtgaaggagtaggtgtagaagg 11654273  T

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Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 11668095 - 11668038
Alignment:
Q  232 gtgggttatggggagtagaaggggtagggtaatcatgtgaaggagtaggtgtagaagg 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11668095 gtgggttatggggagtagaaggggtagggtaatcatgtgaaggagtaggtgtagaagg 11668038  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 187
Target Start/End: Complemental strand, 11654418 - 11654384
Alignment:
Q  153 ttatgttggttatgtggtggagaagagctattagg 187  Q
    |||||||||||||||||||||||||||||||||||    
T  11654418 ttatgttggttatgtggtggagaagagctattagg 11654384  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 187
Target Start/End: Complemental strand, 11668183 - 11668149
Alignment:
Q  153 ttatgttggttatgtggtggagaagagctattagg 187  Q
    |||||||||||||||||||||||||||||||||||    
T  11668183 ttatgttggttatgtggtggagaagagctattagg 11668149  T

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