View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15761_high_4 (Length: 469)

Name: NF15761_high_4
Description: NF15761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15761_high_4
NF15761_high_4
[»] chr6 (2 HSPs)
chr6 (19-464)||(10357149-10357593)
chr6 (385-427)||(33113321-33113363)
[»] chr7 (1 HSPs)
chr7 (231-464)||(26156741-26156974)
[»] chr5 (1 HSPs)
chr5 (241-445)||(19109887-19110091)
[»] chr4 (1 HSPs)
chr4 (65-168)||(13058594-13058696)
[»] scaffold1610 (1 HSPs)
scaffold1610 (220-439)||(560-781)
[»] scaffold1605 (1 HSPs)
scaffold1605 (220-439)||(798-1019)
[»] chr1 (2 HSPs)
chr1 (220-439)||(20443339-20443560)
chr1 (385-427)||(38548161-38548203)
[»] chr3 (2 HSPs)
chr3 (296-434)||(11821776-11821914)
chr3 (385-427)||(55167425-55167467)
[»] chr2 (2 HSPs)
chr2 (381-432)||(38696485-38696536)
chr2 (328-464)||(14849095-14849231)
[»] scaffold0436 (2 HSPs)
scaffold0436 (380-433)||(9691-9744)
scaffold0436 (380-433)||(13826-13879)
[»] chr8 (1 HSPs)
chr8 (391-455)||(10124290-10124354)


Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Original strand, 10357149 - 10357593
Alignment:
Q  19 acagcagcagggaaacccacagaacagcacccaaaacataacaaaagacagcagaaaaacctgcacagggctgctgccacctgcaacagcaaccgctcct 118  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10357149 acagcagcaggaaaacccacagaacagcacccaaaacataacaaaagacagcagaaaaacctgcacagg-ctgctgccacctgcaacagcaaccgctcct 10357247  T
Q  119 ctcagcagcaggaaaacgcagatgctgaaggtccctgccagaaacgctgcagcacaggcacgaggcacccaacaaaaaccccagatgtcgaaaagaagcc 218  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||    
T  10357248 ttcagcagcaggaaaacgcagatgctgaaggtccctgccagaaacgctgcagcacaggcacgaggcacccaacaaaaaccccaaatgccgaaaagaaccc 10357347  T
Q  219 tcccccgccccattaccttctcaaacactcctccggataccactgccattcgtacaacatacaagccgagaaatccattctacccaaaagccacctccac 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  10357348 tcccccgccccattaccttctcaaacactcctccggataccactgccattcgtacaacatacaagccgagaaatccgttctacccaaaagccaccttcac 10357447  T
Q  319 gagagaacttgaatctcttcaactagatcatccactcctttaccacactcgttgaagacacgatcattccgagctttccacataacccatatagccgctt 418  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10357448 aagagaacttgaatctcttcaactagatcatccactcctttaccacactcgttgaagacacgatcattctgagctttccacataacccatatagccgctt 10357547  T
Q  419 gccaaatcaatctccacccttaccgaatcttcttatggtaccctcc 464  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||    
T  10357548 gccaaatcaatctccaccctttccgaatcttcttatggtaacctcc 10357593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 427
Target Start/End: Original strand, 33113321 - 33113363
Alignment:
Q  385 ttccgagctttccacataacccatatagccgcttgccaaatca 427  Q
    ||||| ||||||||||||||||| || ||||||||||||||||    
T  33113321 ttccgcgctttccacataacccaaatcgccgcttgccaaatca 33113363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 231 - 464
Target Start/End: Complemental strand, 26156974 - 26156741
Alignment:
Q  231 ttaccttctcaaacactcctccggataccactgccattcgtacaacatacaagccgagaaatccattctacccaaaagccacctccacgagagaacttga 330  Q
    |||||||||||| ||||||||| ||||||| ||||||||||| | || ||||||||  |||||| |||||| |||||||||||||||||| || | ||||    
T  26156974 ttaccttctcaagcactcctccagataccattgccattcgtaaagcaaacaagccggaaaatccgttctactcaaaagccacctccacgaaagtagttga 26156875  T
Q  331 atctcttcaactagatcatccactcctttaccacactcgttgaagacacgatcattccgagctttccacataacccatatagccgcttgccaaatcaatc 430  Q
    ||||||||||||||||| || |||||||||||||   |  |||| ||||||||||| || |||||||| |||| |||||| |||||||||||||||||||    
T  26156874 atctcttcaactagatcgtcaactcctttaccaccaccagtgaaaacacgatcatttcgtgctttccaaataatccatatcgccgcttgccaaatcaatc 26156775  T
Q  431 tccacccttaccgaatcttcttatggtaccctcc 464  Q
    ||||||||| || || |||||||||||| |||||    
T  26156774 tccaccctttcctaaccttcttatggtagcctcc 26156741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 241 - 445
Target Start/End: Original strand, 19109887 - 19110091
Alignment:
Q  241 aaacactcctccggataccactgccattcgtacaacatacaagccgagaaatccattctacccaaaagccacctccacgagagaacttgaatctcttcaa 340  Q
    ||||| |||||||||||||||| ||| || || |||||||| |||  |  |||| |||||| ||||| |||||||||||| |  |||||||||||||| |    
T  19109887 aaacattcctccggataccacttccactcataaaacatacacgcctggctatccgttctacacaaaaaccacctccacgaaatcacttgaatctcttcta 19109986  T
Q  341 ctagatcatccactccttt-accacactcgttgaagacacgatcattccgagctttccacataacccatatagccgcttgccaaatcaatctccaccctt 439  Q
     |||||||||||  | ||| || ||| | |||||| | |||||| || | |||||||||||||||||| || |||||||||||||||| |||||| ||||    
T  19109987 atagatcatccatgcttttaacgaca-ttgttgaaaatacgatcgtttctagctttccacataacccaaattgccgcttgccaaatcattctccaacctt 19110085  T
Q  440 accgaa 445  Q
     |||||    
T  19110086 tccgaa 19110091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 65 - 168
Target Start/End: Complemental strand, 13058696 - 13058594
Alignment:
Q  65 gacagcagaaaaacctgcacagggctgctgccacctgcaacagcaaccgctcctctcagcagcaggaaaacgcagatgctgaaggtccctgccagaaacg 164  Q
    ||||||||||||||| |||| |||||| |||||||||||||| ||||||| |||| ||| ||||||  ||| |||||||||||||||| |||||||||||    
T  13058696 gacagcagaaaaaccagcacggggctgttgccacctgcaacaacaaccgcgcctcacagaagcagg-taacacagatgctgaaggtccgtgccagaaacg 13058598  T
Q  165 ctgc 168  Q
    ||||    
T  13058597 ctgc 13058594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1610 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold1610
Description:

Target: scaffold1610; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 220 - 439
Target Start/End: Original strand, 560 - 781
Alignment:
Q  220 cccccgccccattaccttctcaaacactcctccggataccactgccattcgtacaacatacaagccgagaaatccattctacccaaaagccacctccacg 319  Q
    |||| ||||| |||||||||||||||||| | ||| ||||  ||||||||||| |||| ||| |  |  |||||| |||||  | |||||||||||||||    
T  560 cccctgccccgttaccttctcaaacactctttcgggtacccttgccattcgtataacaaacacggtggaaaatccgttctattctaaagccacctccacg 659  T
Q  320 agagaacttgaatctcttcaactagatcatccactcctttaccacactcgttg--aagacacgatcattccgagctttccacataacccatatagccgct 417  Q
    | |||||||||||||||||||| || || ||||| |||||    |  | ||||  || |||| |||||| ||||| ||||| || ||| | || ||||||    
T  660 aaagaacttgaatctcttcaacaagctcttccacccctttcagtccattgttgaaaatacacaatcatttcgagcattccaaatcacctaaatcgccgct 759  T
Q  418 tgccaaatcaatctccaccctt 439  Q
    ||||||||||| ||||||||||    
T  760 tgccaaatcaaactccaccctt 781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1605 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold1605
Description:

Target: scaffold1605; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 220 - 439
Target Start/End: Complemental strand, 1019 - 798
Alignment:
Q  220 cccccgccccattaccttctcaaacactcctccggataccactgccattcgtacaacatacaagccgagaaatccattctacccaaaagccacctccacg 319  Q
    |||| ||||| |||||||||||||||||| | ||| ||||  ||||||||||| |||| ||| |  |  |||||| |||||  | |||||||||||||||    
T  1019 cccctgccccgttaccttctcaaacactctttcgggtacccttgccattcgtataacaaacacggtggaaaatccgttctattctaaagccacctccacg 920  T
Q  320 agagaacttgaatctcttcaactagatcatccactcctttaccacactcgttg--aagacacgatcattccgagctttccacataacccatatagccgct 417  Q
    | |||||||||||||||||||| || || ||||| |||||    |  | ||||  || |||| |||||| ||||| ||||| || ||| | || ||||||    
T  919 aaagaacttgaatctcttcaacaagctcttccacccctttcagtccattgttgaaaatacacaatcatttcgagcattccaaatcacctaaatcgccgct 820  T
Q  418 tgccaaatcaatctccaccctt 439  Q
    ||||||||||| ||||||||||    
T  819 tgccaaatcaaactccaccctt 798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 220 - 439
Target Start/End: Complemental strand, 20443560 - 20443339
Alignment:
Q  220 cccccgccccattaccttctcaaacactcctccggataccactgccattcgtacaacatacaagccgagaaatccattctacccaaaagccacctccacg 319  Q
    |||| ||||| |||||||||||||||||| | ||| ||||  ||||||||||| |||| ||| |  |  |||||| |||||  | |||||||||||||||    
T  20443560 cccctgccccgttaccttctcaaacactctttcgggtacccttgccattcgtataacaaacacggtggaaaatccgttctattctaaagccacctccacg 20443461  T
Q  320 agagaacttgaatctcttcaactagatcatccactcctttaccacactcgttg--aagacacgatcattccgagctttccacataacccatatagccgct 417  Q
    | |||||||||||||||||||| || || ||||| |||||    |  | ||||  || |||| |||||| ||||| ||||| || ||| | || ||||||    
T  20443460 aaagaacttgaatctcttcaacaagctcttccacccctttcagtccattgttgaaaatacacaatcatttcgagcattccaaatcacctaaatcgccgct 20443361  T
Q  418 tgccaaatcaatctccaccctt 439  Q
    ||||||||||| ||||||||||    
T  20443360 tgccaaatcaaactccaccctt 20443339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 427
Target Start/End: Complemental strand, 38548203 - 38548161
Alignment:
Q  385 ttccgagctttccacataacccatatagccgcttgccaaatca 427  Q
    ||||| ||||||||||||||||| || ||||||||||||||||    
T  38548203 ttccgcgctttccacataacccaaattgccgcttgccaaatca 38548161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 296 - 434
Target Start/End: Complemental strand, 11821914 - 11821776
Alignment:
Q  296 ttctacccaaaagccacctccacgagagaacttgaatctcttcaactagatcatccactcctttacc-acactcgttgaagacacgatcattccgagctt 394  Q
    |||||||||||| |||||||||||| |  |||||||||| ||| | |||||||||||| | |||| | ||| | |||||| | |||||| || | | |||    
T  11821914 ttctacccaaaaaccacctccacgaaatcacttgaatctattctaatagatcatccacgcttttagcgacatt-gttgaaaatacgatcgtttctatctt 11821816  T
Q  395 tccacataacccatatagccgcttgccaaatcaatctcca 434  Q
    ||||||||||||| || |||||||||||||||| ||||||    
T  11821815 tccacataacccaaattgccgcttgccaaatcattctcca 11821776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 427
Target Start/End: Original strand, 55167425 - 55167467
Alignment:
Q  385 ttccgagctttccacataacccatatagccgcttgccaaatca 427  Q
    ||||| ||||||||||||||||| || ||||||||||||||||    
T  55167425 ttccgcgctttccacataacccaaatcgccgcttgccaaatca 55167467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 432
Target Start/End: Original strand, 38696485 - 38696536
Alignment:
Q  381 atcattccgagctttccacataacccatatagccgcttgccaaatcaatctc 432  Q
    ||||||||  |||||||||||| ||||||| |||||||||||||||| ||||    
T  38696485 atcattcctcgctttccacatagcccatattgccgcttgccaaatcattctc 38696536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 464
Target Start/End: Original strand, 14849095 - 14849231
Alignment:
Q  328 tgaatctcttcaactagatcatccactcctttaccacactcgttgaagacacgatcattccgagctttccacataacccatatagccgcttgccaaatca 427  Q
    |||||||||||||| |  || ||||| |||||| ||   || ||||| | ||| ||||| || | |||||| |||||||| |  || |||||||||||||    
T  14849095 tgaatctcttcaaccaactcctccacccctttaacaacatcattgaacatacggtcattacgtgttttccaaataacccaaacggcggcttgccaaatca 14849194  T
Q  428 atctccacccttaccgaatcttcttatggtaccctcc 464  Q
     |||||| ||   ||| ||||||||||||||||||||    
T  14849195 ttctccaacccctccggatcttcttatggtaccctcc 14849231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0436 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0436
Description:

Target: scaffold0436; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 433
Target Start/End: Original strand, 9691 - 9744
Alignment:
Q  380 gatcattccgagctttccacataacccatatagccgcttgccaaatcaatctcc 433  Q
    |||||||||| |||||||| || ||||| ||||| ||||||||||||| |||||    
T  9691 gatcattccgcgctttccaaatcacccaaatagcagcttgccaaatcattctcc 9744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0436; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 433
Target Start/End: Original strand, 13826 - 13879
Alignment:
Q  380 gatcattccgagctttccacataacccatatagccgcttgccaaatcaatctcc 433  Q
    |||||||||| |||||||| || ||||| ||||| ||||||||||||| |||||    
T  13826 gatcattccgcgctttccaaatcacccaaatagcagcttgccaaatcattctcc 13879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 455
Target Start/End: Complemental strand, 10124354 - 10124290
Alignment:
Q  391 gctttccacataacccatatagccgcttgccaaatcaatctccacccttaccgaatcttcttatg 455  Q
    |||||||||||| |||| ||| ||||||||||||||| |||| | || | ||||||||| |||||    
T  10124354 gctttccacatagcccaaataaccgcttgccaaatcattctcaagcccttccgaatctttttatg 10124290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University