View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15761_low_10 (Length: 430)
Name: NF15761_low_10
Description: NF15761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15761_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Original strand, 34947022 - 34947432
Alignment:
| Q |
16 |
atcccaataactttcagggcctaatgcagtctcaacaattgtgagatcctctccacaagtccatttccctaaatgattgtacgagccaacaataggtgga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34947022 |
atcccaataactttcagggcctaatgcagtctcaacaattgtgagatcctctccacaagtccatttccctaaatgattgtacgagccaacaataggtgga |
34947121 |
T |
|
| Q |
116 |
ctgttcagcaaccgaaccattgaagataaacaatgatcagtggtagagacaaggagttgtgatgttggagtaagagtatatccttctttggtttcatcaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34947122 |
atgttcagcaaccgaaccattgaagataaacaatgatcagtggtagagacaaggagttgtgatgttggagtaagagtatatccttctttggtttcatcaa |
34947221 |
T |
|
| Q |
216 |
ttttgacaattgcaaagaaatcaatgtgtgctaacaagcgcattagtcgacggacgcatgtttcttttgattgtggaaccttaagagctgaaatgagctc |
315 |
Q |
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| T |
34947222 |
ttttgacaattgcaaagaaatcaatgtgtgctaacaagcgcattagtcgaccgacgcatgtttcttttgattgtggaaccttaagagctgaaatgagctc |
34947321 |
T |
|
| Q |
316 |
agaaagagtaatggcttggcgatggttgtggatgatatctggtattttaaggtcaagtgcccatttgacagacattggattaaggtaactatacatgatt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34947322 |
agaaagagtaatggcttggcgatggttgtggatgatatctggtattttaaggtcaagtgcccatttgacagacattggattaaggtaactatacatgatt |
34947421 |
T |
|
| Q |
416 |
ttgtataagtg |
426 |
Q |
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| T |
34947422 |
ttgtataagtg |
34947432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 427
Target Start/End: Original strand, 34951493 - 34951904
Alignment:
| Q |
16 |
atcccaataactttcagggcctaatgcagtctcaacaattgtgagatcctctccacaagtccatttccctaaatgattgtacgagccaacaataggtgga |
115 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || |||| |
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| T |
34951493 |
atcccaataactttctgggcctaatgcggtctcaacaattgtgagatcctctccacaagtccatttccctaaatgattgtacgcgtcaacaagagttgga |
34951592 |
T |
|
| Q |
116 |
ctgttcagcaaccgaaccattgaagataaacaatgatcagtggtagagacaaggagttgtgatgttggagtaagagtatatccttctttggtttcatcaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
34951593 |
gtgttcagcaaccgaaccattgaagataaacaatgatcagtgtcagagacaaggagttgtgatgttggtgtaagagcatatccttctttggtttcatcaa |
34951692 |
T |
|
| Q |
216 |
ttttgacaattgcaaagaaatcaatgtgtgctaacaagcgcattagtcgacggacgcatgtttcttttgattgtggaaccttaagagctgaaatgagctc |
315 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34951693 |
ttttgacaattgcaaagaaatcaatgtgtgctaataagcgcatgagtcgacggacgcatgtttcttttgattgtggaaccttaagagatgaaatgagctc |
34951792 |
T |
|
| Q |
316 |
agaaagagtaatggcttggcgatggttgtggatgatatctggtattttaaggtcaagtgcccatttgacagacattggattaaggtaactatacatgatt |
415 |
Q |
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||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||| |
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| T |
34951793 |
agaaagagtcatggcatggccatggttgtggatgatatctggtattttaaggtcaagtgcccatttaacagacattggattaaggaaaccatacatgatt |
34951892 |
T |
|
| Q |
416 |
ttgtataagtga |
427 |
Q |
| |
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|||||||||||| |
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|
| T |
34951893 |
ttgtataagtga |
34951904 |
T |
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