View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15761_low_11 (Length: 383)
Name: NF15761_low_11
Description: NF15761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15761_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 34465894 - 34466243
Alignment:
| Q |
19 |
tttactagtggcatttgcatgtagaactctcatatggttaacacaaacagttcgttcatgggcgaggcgaacaatagttagttttcgttggaattatttt |
118 |
Q |
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| T |
34465894 |
tttactagtggcatttgcatgtagaactctcatatggttaacacaaacagttcgttcatgggcgaggcgaacaatagttagttttcattggaattatttt |
34465993 |
T |
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| Q |
119 |
ccaaaccaacgaaaatgacattttggacgttgatatgctgaatactctatttgtttaagaatttagattatgctctaagcaaacgccacaattctcacat |
218 |
Q |
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| T |
34465994 |
ccaaaccaacgaaaatgacattttggacgttgatatgctgaatactctatttgtttaagaatttagattatgctctaagcaaacgccacaattctcacat |
34466093 |
T |
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| Q |
219 |
ggttgtgggtggta--nnnnnnnncctcagtgccaactgactttgattacaggtggtgtctaggacagcatcacatttgcatatattggttatatcatgt |
316 |
Q |
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| T |
34466094 |
ggttgtgggtggtattttttttttcctcagtgccaactgactttgattacaggtggtgtctaggacagcatcacatttgcatatattggttatatcatgt |
34466193 |
T |
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| Q |
317 |
agtaataaaacattaaaaggtatagtttgcaaatatgtttaggcaatatt |
366 |
Q |
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| T |
34466194 |
agtaataaaacattaaaaggtatagtttgcaaatatgtttaggcaatatt |
34466243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 226
Target Start/End: Original strand, 34464320 - 34464402
Alignment:
| Q |
144 |
gacgttgatatgctgaatactctatttgtttaagaatttagattatgctctaagcaaacgccacaattctcacatggttgtgg |
226 |
Q |
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| T |
34464320 |
gacgttgagatgttgaataacctatttggtttggaatttagattttgttccaagcaaacaccactattctcacatggttgtgg |
34464402 |
T |
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