View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15761_low_13 (Length: 337)

Name: NF15761_low_13
Description: NF15761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15761_low_13
NF15761_low_13
[»] chr4 (29 HSPs)
chr4 (224-327)||(6083218-6083321)
chr4 (172-211)||(1621874-1621913)
chr4 (287-327)||(18882348-18882388)
chr4 (173-211)||(10472497-10472535)
chr4 (173-211)||(11785974-11786012)
chr4 (173-211)||(11798141-11798179)
chr4 (173-211)||(13635753-13635791)
chr4 (289-327)||(46481389-46481427)
chr4 (173-211)||(49492540-49492578)
chr4 (173-211)||(55765481-55765519)
chr4 (176-208)||(20861583-20861615)
chr4 (177-213)||(38010145-38010181)
chr4 (180-211)||(805109-805140)
chr4 (175-210)||(38244946-38244981)
chr4 (172-211)||(49426085-49426124)
chr4 (173-211)||(15051164-15051202)
chr4 (167-209)||(26578219-26578261)
chr4 (173-211)||(27865765-27865803)
chr4 (173-211)||(30597699-30597737)
chr4 (173-211)||(35291576-35291614)
chr4 (173-211)||(36011843-36011881)
chr4 (173-211)||(46672439-46672477)
chr4 (173-211)||(51921293-51921331)
chr4 (166-211)||(25574156-25574201)
chr4 (290-327)||(51536170-51536207)
chr4 (287-327)||(48030310-48030350)
chr4 (287-327)||(49793088-49793128)
chr4 (173-209)||(53441320-53441356)
chr4 (287-327)||(56432515-56432555)
[»] chr6 (13 HSPs)
chr6 (17-67)||(10357973-10358023)
chr6 (174-213)||(34870112-34870151)
chr6 (173-211)||(1449542-1449580)
chr6 (172-207)||(15493173-15493208)
chr6 (172-211)||(31216661-31216700)
chr6 (176-211)||(30908655-30908690)
chr6 (173-211)||(1536924-1536962)
chr6 (173-211)||(7089082-7089120)
chr6 (278-327)||(287414-287463)
chr6 (290-327)||(12106064-12106101)
chr6 (176-208)||(7764444-7764476)
chr6 (197-225)||(15493327-15493355)
chr6 (287-327)||(34915543-34915583)
[»] chr3 (22 HSPs)
chr3 (75-172)||(11821193-11821291)
chr3 (170-211)||(9596008-9596049)
chr3 (172-211)||(30947939-30947978)
chr3 (176-211)||(51846808-51846843)
chr3 (173-211)||(9106267-9106305)
chr3 (173-211)||(26662566-26662604)
chr3 (174-211)||(33414041-33414078)
chr3 (287-327)||(1111648-1111688)
chr3 (171-211)||(47335030-47335070)
chr3 (172-211)||(6097712-6097751)
chr3 (172-211)||(19284670-19284709)
chr3 (176-211)||(34563375-34563410)
chr3 (176-211)||(41192378-41192413)
chr3 (172-211)||(54379162-54379201)
chr3 (173-211)||(3475435-3475473)
chr3 (185-223)||(33413899-33413937)
chr3 (173-211)||(46237786-46237824)
chr3 (290-327)||(9582243-9582280)
chr3 (171-207)||(2941958-2941994)
chr3 (197-225)||(19284824-19284852)
chr3 (287-327)||(24087335-24087375)
chr3 (197-225)||(34562392-34562420)
[»] scaffold0074 (2 HSPs)
scaffold0074 (167-207)||(24268-24308)
scaffold0074 (173-224)||(44776-44826)
[»] chr8 (18 HSPs)
chr8 (171-211)||(19784269-19784309)
chr8 (173-211)||(41451105-41451143)
chr8 (288-327)||(26625791-26625830)
chr8 (172-208)||(7857679-7857715)
chr8 (171-211)||(34648156-34648196)
chr8 (176-211)||(9852273-9852308)
chr8 (172-211)||(15227029-15227068)
chr8 (180-211)||(23396484-23396515)
chr8 (176-211)||(40023290-40023325)
chr8 (288-327)||(40784889-40784928)
chr8 (173-211)||(10237354-10237392)
chr8 (289-327)||(29321294-29321332)
chr8 (173-211)||(30413914-30413952)
chr8 (173-211)||(41099182-41099220)
chr8 (173-211)||(43690640-43690678)
chr8 (287-324)||(36408412-36408449)
chr8 (171-211)||(2522865-2522905)
chr8 (173-213)||(40012208-40012247)
[»] chr5 (14 HSPs)
chr5 (77-172)||(19110566-19110662)
chr5 (172-211)||(37456679-37456718)
chr5 (173-211)||(3884063-3884101)
chr5 (173-211)||(26637865-26637903)
chr5 (173-211)||(30783435-30783473)
chr5 (170-211)||(15416661-15416702)
chr5 (288-327)||(16926450-16926489)
chr5 (173-211)||(13552983-13553021)
chr5 (173-211)||(14394468-14394506)
chr5 (289-327)||(27873345-27873383)
chr5 (286-327)||(8949808-8949849)
chr5 (197-225)||(14394621-14394649)
chr5 (173-213)||(16552665-16552705)
chr5 (183-223)||(37456820-37456859)
[»] chr2 (16 HSPs)
chr2 (169-209)||(8149827-8149867)
chr2 (169-209)||(8154451-8154491)
chr2 (172-211)||(2263572-2263611)
chr2 (173-211)||(7487282-7487320)
chr2 (171-211)||(39355033-39355073)
chr2 (172-211)||(15016594-15016633)
chr2 (180-211)||(21155441-21155472)
chr2 (180-211)||(27974299-27974330)
chr2 (180-211)||(28060828-28060859)
chr2 (176-211)||(41346068-41346103)
chr2 (173-211)||(9143585-9143623)
chr2 (289-327)||(17665522-17665560)
chr2 (173-211)||(18762867-18762905)
chr2 (290-327)||(10399462-10399499)
chr2 (287-327)||(25624730-25624770)
chr2 (175-211)||(34464713-34464749)
[»] scaffold0571 (1 HSPs)
scaffold0571 (172-211)||(704-743)
[»] scaffold0045 (1 HSPs)
scaffold0045 (172-211)||(33683-33722)
[»] scaffold0581 (1 HSPs)
scaffold0581 (172-210)||(8450-8488)
[»] chr7 (16 HSPs)
chr7 (173-211)||(763697-763735)
chr7 (173-211)||(16933272-16933310)
chr7 (173-211)||(16938655-16938693)
chr7 (287-327)||(9140533-9140573)
chr7 (167-211)||(46358514-46358558)
chr7 (176-211)||(24359874-24359909)
chr7 (296-327)||(41787256-41787287)
chr7 (172-211)||(41911137-41911176)
chr7 (176-210)||(11732676-11732710)
chr7 (173-211)||(20000702-20000740)
chr7 (173-211)||(30884250-30884288)
chr7 (173-211)||(31660069-31660107)
chr7 (289-327)||(38736450-38736488)
chr7 (287-327)||(25950828-25950868)
chr7 (197-225)||(31660222-31660250)
chr7 (171-211)||(47340144-47340184)
[»] chr1 (21 HSPs)
chr1 (173-211)||(6314115-6314153)
chr1 (173-211)||(20434750-20434788)
chr1 (172-211)||(50351802-50351841)
chr1 (173-211)||(4097936-4097974)
chr1 (173-211)||(25889056-25889094)
chr1 (173-211)||(49936965-49937003)
chr1 (176-209)||(20507311-20507344)
chr1 (176-213)||(31083365-31083402)
chr1 (176-208)||(23175553-23175585)
chr1 (172-211)||(11421593-11421632)
chr1 (176-211)||(21256800-21256835)
chr1 (172-211)||(24635925-24635964)
chr1 (180-211)||(37228372-37228403)
chr1 (172-211)||(48762359-48762398)
chr1 (173-211)||(19897788-19897826)
chr1 (173-211)||(34369660-34369698)
chr1 (172-214)||(41033261-41033302)
chr1 (173-211)||(43452542-43452580)
chr1 (170-211)||(18618832-18618873)
chr1 (197-225)||(24636079-24636107)
chr1 (177-213)||(31529691-31529727)
[»] scaffold0025 (1 HSPs)
scaffold0025 (287-327)||(65637-65677)


Alignment Details
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 224 - 327
Target Start/End: Original strand, 6083218 - 6083321
Alignment:
Q  224 ccgtaaaacttcgctcgagttctctcgaaattttttcaatttcagaaaactgttatgtatcggaaatactatctccatccctaattataagacctttttg 323  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||    
T  6083218 ccgtaaaactttgctcgagttctctcgaaattttttcaatttcagaaaactgttacgtatcggaaatactatctccgtccttaattataagacctttttg 6083317  T
Q  324 agaa 327  Q
    ||||    
T  6083318 agaa 6083321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 1621874 - 1621913
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1621874 cggcaaaagttatggtgcataagccatttccttatgcacc 1621913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 18882348 - 18882388
Alignment:
Q  287 aaatactatctccatccctaattataagacctttttgagaa 327  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  18882348 aaatactatctccgtccctaattataagacctttttgagaa 18882388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 10472497 - 10472535
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  10472497 ggcaaaagttatggtgcataagtcatttccttatgcacc 10472535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 11785974 - 11786012
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  11785974 ggcaaaagttatggtgcataaaccatttccttatgcacc 11786012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 11798141 - 11798179
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  11798141 ggcaaaagttatggtgcataaaccatttccttatgcacc 11798179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 13635791 - 13635753
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  13635791 ggcaaaagttatggtgcataagtcatttccttatgcacc 13635753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 327
Target Start/End: Complemental strand, 46481427 - 46481389
Alignment:
Q  289 atactatctccatccctaattataagacctttttgagaa 327  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  46481427 atactacctccatccctaattataagacctttttgagaa 46481389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 49492578 - 49492540
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  49492578 ggcaaaagttatggtgcataagtcatttccttatgcacc 49492540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 55765481 - 55765519
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  55765481 ggcaaaagttatggtgcataagtcatttccttatgcacc 55765519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 20861583 - 20861615
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgc 208  Q
    |||||||||||||||||||||||||||||||||    
T  20861583 aaaagttatggtgcataagccatttccttatgc 20861615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 38010145 - 38010181
Alignment:
Q  177 aaagttatggtgcataagccatttccttatgcaccat 213  Q
    |||||||||||||||||| ||||||||||||||||||    
T  38010145 aaagttatggtgcataagtcatttccttatgcaccat 38010181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 211
Target Start/End: Original strand, 805109 - 805140
Alignment:
Q  180 gttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||||||||||    
T  805109 gttatggtgcataagccatttccttatgcacc 805140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 38244946 - 38244981
Alignment:
Q  175 caaaagttatggtgcataagccatttccttatgcac 210  Q
    |||||||||||||||||||||||||||||| |||||    
T  38244946 caaaagttatggtgcataagccatttccttctgcac 38244981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 49426124 - 49426085
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  49426124 cggcaaaagttatggtgcataagttatttccttatgcacc 49426085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 15051202 - 15051164
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  15051202 ggcaaaagttatggtgcataagttatttccttatgcacc 15051164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 26578261 - 26578219
Alignment:
Q  167 aaaatcggcaaaagttatggtgcataagccatttccttatgca 209  Q
    ||||| ||||||||| ||||||||||||||||||| |||||||    
T  26578261 aaaataggcaaaagtcatggtgcataagccatttctttatgca 26578219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 27865803 - 27865765
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  27865803 ggcaaaagttatagtgcataagccatttccatatgcacc 27865765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 30597699 - 30597737
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  30597699 ggcaaaagttatggtgcataagttatttccttatgcacc 30597737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 35291614 - 35291576
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  35291614 ggcaaaagttatggtgcataagttatttccttatgcacc 35291576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 36011843 - 36011881
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  36011843 ggcaaaagttatggtgcataagttatttccttatgcacc 36011881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 46672439 - 46672477
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  46672439 ggcaaaagttatggtgcataagttatttccttatgcacc 46672477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 51921331 - 51921293
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  51921331 ggcaaaagttatggtgcataagttatttccttatgcacc 51921293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 25574201 - 25574156
Alignment:
Q  166 gaaaatcggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||| |||||||||||||  |||||||| ||||||||||||||||    
T  25574201 gaaaaccggcaaaagttattatgcataagtcatttccttatgcacc 25574156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 51536170 - 51536207
Alignment:
Q  290 tactatctccatccctaattataagacctttttgagaa 327  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  51536170 tactctctccctccctaattataagacctttttgagaa 51536207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 48030310 - 48030350
Alignment:
Q  287 aaatactatctccatccctaattataagacctttttgagaa 327  Q
    |||||||  |||||||||||||||||||||| |||||||||    
T  48030310 aaatactccctccatccctaattataagacccttttgagaa 48030350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 49793088 - 49793128
Alignment:
Q  287 aaatactatctccatccctaattataagacctttttgagaa 327  Q
    |||||||| |||| ||||||||||||||||| |||||||||    
T  49793088 aaatactacctccgtccctaattataagacccttttgagaa 49793128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 53441320 - 53441356
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgca 209  Q
    ||||||||||||||||||||||  |||||||||||||    
T  53441320 ggcaaaagttatggtgcataagttatttccttatgca 53441356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 56432515 - 56432555
Alignment:
Q  287 aaatactatctccatccctaattataagacctttttgagaa 327  Q
    |||||||| |||| ||||||||||||||||| |||||||||    
T  56432515 aaatactacctccgtccctaattataagacccttttgagaa 56432555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 10358023 - 10357973
Alignment:
Q  17 atactataggacattctaataaaaatcaccttattaagaaaagttccgaga 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10358023 atactataggacattctaataaaaatcaccttattaagaaaagttccgaga 10357973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 34870151 - 34870112
Alignment:
Q  174 gcaaaagttatggtgcataagccatttccttatgcaccat 213  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34870151 gcaaaagttatggtgcataagccatttccttatgcaccat 34870112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 1449542 - 1449580
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1449542 ggcaaaagttatggtgcataagccatttccttatgcacc 1449580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 15493173 - 15493208
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatg 207  Q
    ||||||||||||||||||||||||||||||||||||    
T  15493173 cggcaaaagttatggtgcataagccatttccttatg 15493208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 31216661 - 31216700
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  31216661 cggcaaaagttatggtgcataagtcatttccttatgcacc 31216700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 30908655 - 30908690
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||| ||||||||||||||||    
T  30908655 aaaagttatggtgcataagtcatttccttatgcacc 30908690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 1536962 - 1536924
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  1536962 ggcaaaagttatggtgcataagttatttccttatgcacc 1536924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 7089082 - 7089120
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  7089082 ggcaaaagttatggtgcataagttatttccttatgcacc 7089120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 287463 - 287414
Alignment:
Q  278 atgtatcggaaatactatctccatccctaattataagacctttttgagaa 327  Q
    |||||||| || ||||  |||| |||||||||||||||||||||||||||    
T  287463 atgtatcgcaactactccctccgtccctaattataagacctttttgagaa 287414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 12106101 - 12106064
Alignment:
Q  290 tactatctccatccctaattataagacctttttgagaa 327  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  12106101 tactctctccgtccctaattataagacctttttgagaa 12106064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 7764444 - 7764476
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgc 208  Q
    ||||||||||||||||||||||||| |||||||    
T  7764444 aaaagttatggtgcataagccattttcttatgc 7764476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 15493327 - 15493355
Alignment:
Q  197 atttccttatgcaccataaccactccccc 225  Q
    |||||||||||||||||||||||||||||    
T  15493327 atttccttatgcaccataaccactccccc 15493355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 34915583 - 34915543
Alignment:
Q  287 aaatactatctccatccctaattataagacctttttgagaa 327  Q
    |||||||| |||| ||||||||||||||||| |||||||||    
T  34915583 aaatactacctccgtccctaattataagacccttttgagaa 34915543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 11821193 - 11821291
Alignment:
Q  75 ccttgtcaaatcaacaagaggctacggtggatgagatgagaccggg-gggtgttggaggttgagttggaggcgtggtctttttgtgtgggaagaaaatc 172  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||| ||    |||  || || |||||||||| | ||||||||||||||||||||||    
T  11821193 ccttgtcaaaccaacaagaggctacggtggatgatatgagaccgggaggaacgtggttgtggatttggaggcgtagactttttgtgtgggaagaaaatc 11821291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 9596049 - 9596008
Alignment:
Q  170 atcggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  9596049 atcggcaaaagttatggtgcataagctatttccttatgcacc 9596008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 30947978 - 30947939
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  30947978 cggcaaaagttatggtgcataagtcatttccttatgcacc 30947939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 51846843 - 51846808
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||||||||||||||    
T  51846843 aaaagttatggtgcataagccatttccttatgcacc 51846808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 9106267 - 9106305
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  9106267 ggcaaaagttatggtgcataagtcatttccttatgcacc 9106305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 26662604 - 26662566
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  26662604 ggcaaaagttattgtgcataagccatttccttatgcacc 26662566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 33414078 - 33414041
Alignment:
Q  174 gcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  33414078 gcaaaagttatggtgcataagtcatttccttatgcacc 33414041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 1111688 - 1111648
Alignment:
Q  287 aaatactatctccatccctaattataagacctttttgagaa 327  Q
    ||||||||||||| ||||||||||||||||| |||||||||    
T  1111688 aaatactatctccgtccctaattataagacccttttgagaa 1111648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 47335030 - 47335070
Alignment:
Q  171 tcggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  47335030 tcggcaaaagttatggtgcataagttatttccttatgcacc 47335070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 6097751 - 6097712
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  6097751 cggcaaaagttatggtgcataagttatttccttatgcacc 6097712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 19284670 - 19284709
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  19284670 cggcaaaagttatggtgcataagttatttccttatgcacc 19284709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 34563410 - 34563375
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||| ||||||||||    
T  34563410 aaaagttatggtgcataagccattttcttatgcacc 34563375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 41192413 - 41192378
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||| ||||||||||||||||    
T  41192413 aaaagttatggtgcataagtcatttccttatgcacc 41192378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 54379162 - 54379201
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  54379162 cggcaaaagttatggtgcataagttatttccttatgcacc 54379201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 3475473 - 3475435
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  3475473 ggcaaaagttatggtgcataagttatttccttatgcacc 3475435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 33413937 - 33413899
Alignment:
Q  185 ggtgcataagccatttccttatgcaccataaccactccc 223  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  33413937 ggtgcataagggatttccttatgcaccataaccactccc 33413899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 46237824 - 46237786
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  46237824 ggcaaaagttatggtgcataagttatttccttatgcacc 46237786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 9582243 - 9582280
Alignment:
Q  290 tactatctccatccctaattataagacctttttgagaa 327  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  9582243 tactacctccatccctaattataagacccttttgagaa 9582280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 2941994 - 2941958
Alignment:
Q  171 tcggcaaaagttatggtgcataagccatttccttatg 207  Q
    ||||||||||||||||||||||||  |||||||||||    
T  2941994 tcggcaaaagttatggtgcataagttatttccttatg 2941958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 19284824 - 19284852
Alignment:
Q  197 atttccttatgcaccataaccactccccc 225  Q
    |||||||||||||||||||||||||||||    
T  19284824 atttccttatgcaccataaccactccccc 19284852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 24087375 - 24087335
Alignment:
Q  287 aaatactatctccatccctaattataagacctttttgagaa 327  Q
    |||||||| |||| ||||||||||||||||| |||||||||    
T  24087375 aaatactacctccgtccctaattataagacccttttgagaa 24087335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 34562420 - 34562392
Alignment:
Q  197 atttccttatgcaccataaccactccccc 225  Q
    |||||||||||||||||||||||||||||    
T  34562420 atttccttatgcaccataaccactccccc 34562392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 24268 - 24308
Alignment:
Q  167 aaaatcggcaaaagttatggtgcataagccatttccttatg 207  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24268 aaaatcggcaaaagttatggtgcataagccatttccttatg 24308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 44826 - 44776
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcaccataaccactcccc 224  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  44826 ggcaaaagttatggtgcataaga-atttccttatgcaccataaccactcccc 44776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 19784269 - 19784309
Alignment:
Q  171 tcggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19784269 tcggcaaaagttatggtgcataagccatttccttatgcacc 19784309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 41451105 - 41451143
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41451105 ggcaaaagttatggtgcataagccatttccttatgcacc 41451143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 327
Target Start/End: Original strand, 26625791 - 26625830
Alignment:
Q  288 aatactatctccatccctaattataagacctttttgagaa 327  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  26625791 aatactacctccatccctaattataagacctttttgagaa 26625830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 7857679 - 7857715
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgc 208  Q
    ||||||||||||||||||||||||||||| |||||||    
T  7857679 cggcaaaagttatggtgcataagccattttcttatgc 7857715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 34648196 - 34648156
Alignment:
Q  171 tcggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  34648196 tcgggaaaagttatggtgcataagtcatttccttatgcacc 34648156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 9852273 - 9852308
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||| ||||||||||||||||    
T  9852273 aaaagttatggtgcataagtcatttccttatgcacc 9852308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 15227029 - 15227068
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  15227029 cggcaaaagttatggtgcataagttatttccttatgcacc 15227068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 211
Target Start/End: Original strand, 23396484 - 23396515
Alignment:
Q  180 gttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||||||||||    
T  23396484 gttatggtgcataagccatttccttatgcacc 23396515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 40023325 - 40023290
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||||||||| ||||    
T  40023325 aaaagttatggtgcataagccatttccttatacacc 40023290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 327
Target Start/End: Original strand, 40784889 - 40784928
Alignment:
Q  288 aatactatctccatccctaattataagacctttttgagaa 327  Q
    ||||||| |||| |||||||||||||||||||||||||||    
T  40784889 aatactacctccgtccctaattataagacctttttgagaa 40784928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 10237354 - 10237392
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  10237354 ggcaaaagttatggtgcataagttatttccttatgcacc 10237392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 327
Target Start/End: Complemental strand, 29321332 - 29321294
Alignment:
Q  289 atactatctccatccctaattataagacctttttgagaa 327  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  29321332 atactacctccatccctaattataagacccttttgagaa 29321294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 30413914 - 30413952
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  30413914 ggcaaaagttatgctgcataagtcatttccttatgcacc 30413952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 41099182 - 41099220
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  41099182 ggcaaaagttatggtgcataagttatttccttatgcacc 41099220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 43690640 - 43690678
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  43690640 ggcaaaagttatggtgcataagttatttccttatgcacc 43690678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 36408412 - 36408449
Alignment:
Q  287 aaatactatctccatccctaattataagacctttttga 324  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  36408412 aaatactacctccgtccctaattataagacctttttga 36408449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 2522865 - 2522905
Alignment:
Q  171 tcggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||  |||||||| ||||||||||||||||    
T  2522865 tcggcaaaagttattatgcataagtcatttccttatgcacc 2522905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 40012247 - 40012208
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcaccat 213  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  40012247 ggcaaaagttatggtgcataag-gatttccttatgcaccat 40012208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 172
Target Start/End: Complemental strand, 19110662 - 19110566
Alignment:
Q  77 ttgtcaaatcaacaagaggctacggtggatgagatgagaccggg-gggtgttggaggttgagttggaggcgtggtctttttgtgtgggaagaaaatc 172  Q
    |||||||| ||||||||||||||||||||||| ||||||||||| ||  | |||  || ||||||||| ||| | |||||||||| |||||||||||    
T  19110662 ttgtcaaaccaacaagaggctacggtggatgatatgagaccgggaggaaggtggttgtggagttggagacgtagactttttgtgtaggaagaaaatc 19110566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 37456679 - 37456718
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  37456679 cggcaaaagttatggtgcatgagccatttccttatgcacc 37456718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 3884101 - 3884063
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  3884101 ggcaaaagttatggtgcataagtcatttccttatgcacc 3884063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 26637903 - 26637865
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  26637903 ggcaaaagttatggtgcataagccattttcttatgcacc 26637865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 30783435 - 30783473
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  30783435 ggcaaaagttatggtgcataagtcatttccttatgcacc 30783473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 15416661 - 15416702
Alignment:
Q  170 atcggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||||  |||||||||||||||    
T  15416661 atcggcaaaagttatggtgcataagttatttccttatgcacc 15416702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 327
Target Start/End: Original strand, 16926450 - 16926489
Alignment:
Q  288 aatactatctccatccctaattataagacctttttgagaa 327  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  16926450 aatactacctccatccctaattataagacccttttgagaa 16926489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 13552983 - 13553021
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  13552983 ggcaaaagttatggtgcataagttatttccttatgcacc 13553021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 14394468 - 14394506
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  14394468 ggcaaaagttatggtgcataagttatttccttatgcacc 14394506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 327
Target Start/End: Complemental strand, 27873383 - 27873345
Alignment:
Q  289 atactatctccatccctaattataagacctttttgagaa 327  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  27873383 atactatctccgtccctaattataagacccttttgagaa 27873345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 327
Target Start/End: Original strand, 8949808 - 8949849
Alignment:
Q  286 gaaatactatctccatccctaattataagacctttttgagaa 327  Q
    ||||||||| |||| ||||||||||||||||| |||||||||    
T  8949808 gaaatactacctccgtccctaattataagacccttttgagaa 8949849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 14394621 - 14394649
Alignment:
Q  197 atttccttatgcaccataaccactccccc 225  Q
    |||||||||||||||||||||||||||||    
T  14394621 atttccttatgcaccataaccactccccc 14394649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 16552705 - 16552665
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcaccat 213  Q
    ||||||||||||  |||||||| ||||||||||||||||||    
T  16552705 ggcaaaagttattatgcataagtcatttccttatgcaccat 16552665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 37456820 - 37456859
Alignment:
Q  183 atggtgcataagccatttccttatgcaccataaccactccc 223  Q
    ||||||||||||  |||||||||||||||||||||||||||    
T  37456820 atggtgcataagg-atttccttatgcaccataaccactccc 37456859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 8149827 - 8149867
Alignment:
Q  169 aatcggcaaaagttatggtgcataagccatttccttatgca 209  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8149827 aatcggcaaaagttatggtgcataagccatttccttatgca 8149867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 8154451 - 8154491
Alignment:
Q  169 aatcggcaaaagttatggtgcataagccatttccttatgca 209  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8154451 aatcggcaaaagttatggtgcataagccatttccttatgca 8154491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 2263572 - 2263611
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  2263572 cggcaaaagttatggtgcataagccatttctttatgcacc 2263611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 7487320 - 7487282
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  7487320 ggcaaaagttatggtgcataagctatttccttatgcacc 7487282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 39355033 - 39355073
Alignment:
Q  171 tcggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  39355033 tcggcaaaagttatggtgcataagttatttccttatgcacc 39355073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 15016633 - 15016594
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  15016633 cggcaaaagttatggtgcataagttatttccttatgcacc 15016594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 211
Target Start/End: Original strand, 21155441 - 21155472
Alignment:
Q  180 gttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||||||||||    
T  21155441 gttatggtgcataagccatttccttatgcacc 21155472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 211
Target Start/End: Complemental strand, 27974330 - 27974299
Alignment:
Q  180 gttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||||||||||    
T  27974330 gttatggtgcataagccatttccttatgcacc 27974299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 211
Target Start/End: Complemental strand, 28060859 - 28060828
Alignment:
Q  180 gttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||||||||||    
T  28060859 gttatggtgcataagccatttccttatgcacc 28060828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 41346103 - 41346068
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||| ||||||||||    
T  41346103 aaaagttatggtgcataagccattttcttatgcacc 41346068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 9143585 - 9143623
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  9143585 ggcaaaagttatggtgcataagttatttccttatgcacc 9143623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 327
Target Start/End: Original strand, 17665522 - 17665560
Alignment:
Q  289 atactatctccatccctaattataagacctttttgagaa 327  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  17665522 atactagctccgtccctaattataagacctttttgagaa 17665560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 18762867 - 18762905
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  18762867 ggcaaaagttatggtgcataagttatttccttatgcacc 18762905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 10399499 - 10399462
Alignment:
Q  290 tactatctccatccctaattataagacctttttgagaa 327  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  10399499 tactacctccatccctaattataagacccttttgagaa 10399462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 25624730 - 25624770
Alignment:
Q  287 aaatactatctccatccctaattataagacctttttgagaa 327  Q
    |||||||  |||| |||||||||||||||||||||||||||    
T  25624730 aaatactccctccgtccctaattataagacctttttgagaa 25624770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 34464713 - 34464749
Alignment:
Q  175 caaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||  |||||||||||||||    
T  34464713 caaaagttatggtgcataagttatttccttatgcacc 34464749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 743 - 704
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  743 cggcaaaagttatggtgcataagccatttccttatgcacc 704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 33683 - 33722
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33683 cggcaaaagttatggtgcataagccatttccttatgcacc 33722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0581 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 8488 - 8450
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcac 210  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8488 cggcaaaagttatggtgcataagccatttccttatgcac 8450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 763697 - 763735
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||||||||||||||||||    
T  763697 ggcaaaagttatggtgcataagccatttccttatgcacc 763735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 16933310 - 16933272
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  16933310 ggcaaaagttatggtgcataagtcatttccttatgcacc 16933272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 16938693 - 16938655
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  16938693 ggcaaaagttatggtgcataagtcatttccttatgcacc 16938655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 9140573 - 9140533
Alignment:
Q  287 aaatactatctccatccctaattataagacctttttgagaa 327  Q
    ||||||||||||| ||||||||||||||||| |||||||||    
T  9140573 aaatactatctccgtccctaattataagacccttttgagaa 9140533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 46358514 - 46358558
Alignment:
Q  167 aaaatcggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||| ||||||||||||||||||||||  |||||||||||||||    
T  46358514 aaaataggcaaaagttatggtgcataagttatttccttatgcacc 46358558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 24359874 - 24359909
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||| ||||||||||||||||    
T  24359874 aaaagttatggtgcataagtcatttccttatgcacc 24359909  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 296 - 327
Target Start/End: Original strand, 41787256 - 41787287
Alignment:
Q  296 ctccatccctaattataagacctttttgagaa 327  Q
    ||||||||||||||||||||||||||||||||    
T  41787256 ctccatccctaattataagacctttttgagaa 41787287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 41911176 - 41911137
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  41911176 cggcaaaagttatggtgcataagttatttccttatgcacc 41911137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 11732710 - 11732676
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgcac 210  Q
    ||||||||||||||||||||||||| |||||||||    
T  11732710 aaaagttatggtgcataagccattttcttatgcac 11732676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 20000740 - 20000702
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  20000740 ggcaaaagttatggtgcataagtcatttacttatgcacc 20000702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 30884288 - 30884250
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  30884288 ggcaaaagttatggtgcataagttatttccttatgcacc 30884250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 31660069 - 31660107
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  31660069 ggcaaaagttatggtgcataagttatttccttatgcacc 31660107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 327
Target Start/End: Original strand, 38736450 - 38736488
Alignment:
Q  289 atactatctccatccctaattataagacctttttgagaa 327  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  38736450 atactacctccctccctaattataagacctttttgagaa 38736488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 25950828 - 25950868
Alignment:
Q  287 aaatactatctccatccctaattataagacctttttgagaa 327  Q
    |||||||| |||| ||| |||||||||||||||||||||||    
T  25950828 aaatactacctccgtccttaattataagacctttttgagaa 25950868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 31660222 - 31660250
Alignment:
Q  197 atttccttatgcaccataaccactccccc 225  Q
    |||||||||||||||||||||||||||||    
T  31660222 atttccttatgcaccataaccactccccc 31660250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 47340144 - 47340184
Alignment:
Q  171 tcggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||  |||| ||||||||||    
T  47340144 tcggcaaaagttatggtgcataagttattttcttatgcacc 47340184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 6314115 - 6314153
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6314115 ggcaaaagttatggtgcataagccatttccttatgcacc 6314153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 20434788 - 20434750
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20434788 ggcaaaagttatggtgcataagccatttccttatgcacc 20434750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 50351802 - 50351841
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  50351802 cggcaaaagttatggtgcataagtcatttccttatgcacc 50351841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 4097974 - 4097936
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  4097974 ggcaaaagttatggtgcataagctatttccttatgcacc 4097936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 25889094 - 25889056
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  25889094 ggcaaaagttatggtgcataagctatttccttatgcacc 25889056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 49937003 - 49936965
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  49937003 ggcaaaagttatggtgcataagtcatttccttatgcacc 49936965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 20507344 - 20507311
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgca 209  Q
    ||||||||||||||||||||||||||||||||||    
T  20507344 aaaagttatggtgcataagccatttccttatgca 20507311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 31083365 - 31083402
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgcaccat 213  Q
    |||||||||||||||||||||||||||||||| |||||    
T  31083365 aaaagttatggtgcataagccatttccttatgtaccat 31083402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 23175585 - 23175553
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgc 208  Q
    |||||||||||||||||||||||||||||||||    
T  23175585 aaaagttatggtgcataagccatttccttatgc 23175553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 11421593 - 11421632
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  11421593 cggcaaaagttatggtgcataaatcatttccttatgcacc 11421632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 21256835 - 21256800
Alignment:
Q  176 aaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||| ||||||||||    
T  21256835 aaaagttatggtgcataagccattttcttatgcacc 21256800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 24635925 - 24635964
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  24635925 cggcaaaagttatggtgcataagttatttccttatgcacc 24635964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 211
Target Start/End: Complemental strand, 37228403 - 37228372
Alignment:
Q  180 gttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||||||||||    
T  37228403 gttatggtgcataagccatttccttatgcacc 37228372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 48762398 - 48762359
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  48762398 cggcaaaagttatggtgcataagttatttccttatgcacc 48762359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 19897826 - 19897788
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  19897826 ggcaaaagttatggtgcataagttatttccttatgcacc 19897788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 34369660 - 34369698
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  34369660 ggcaaaaattatggtgcataagccattttcttatgcacc 34369698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 41033261 - 41033302
Alignment:
Q  172 cggcaaaagttatggtgcataagccatttccttatgcaccata 214  Q
    |||||||||||||||||||||||  ||||||||||||||||||    
T  41033261 cggcaaaagttatggtgcataag-gatttccttatgcaccata 41033302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 43452542 - 43452580
Alignment:
Q  173 ggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  43452542 ggcaaaagttatggtgcataagttatttccttatgcacc 43452580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 18618832 - 18618873
Alignment:
Q  170 atcggcaaaagttatggtgcataagccatttccttatgcacc 211  Q
    ||||||||||||||||||||||||   |||||||||||||||    
T  18618832 atcggcaaaagttatggtgcataaattatttccttatgcacc 18618873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 24636079 - 24636107
Alignment:
Q  197 atttccttatgcaccataaccactccccc 225  Q
    |||||||||||||||||||||||||||||    
T  24636079 atttccttatgcaccataaccactccccc 24636107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 31529727 - 31529691
Alignment:
Q  177 aaagttatggtgcataagccatttccttatgcaccat 213  Q
    ||||||||  |||||||||||||||||||||||||||    
T  31529727 aaagttattatgcataagccatttccttatgcaccat 31529691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 65677 - 65637
Alignment:
Q  287 aaatactatctccatccctaattataagacctttttgagaa 327  Q
    |||||||  |||| |||||||||||||||||||||||||||    
T  65677 aaatactccctccgtccctaattataagacctttttgagaa 65637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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