View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15761_low_14 (Length: 318)
Name: NF15761_low_14
Description: NF15761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15761_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 6 - 314
Target Start/End: Complemental strand, 29608486 - 29608178
Alignment:
| Q |
6 |
aaatacttgagatcatggcatccatcgataaatagatgctccat-cagcgattttaactggcctttctctaataatatcaccctctcgtagaagaaactt |
104 |
Q |
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| T |
29608486 |
aaatacttgaggtcatagcatccatcgataaaaa--tgctccattcaatgaatttagttggcccttctctaaccgtaccaccctctcgtagaagaaactt |
29608389 |
T |
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| Q |
105 |
gtacttactttcagaaatttgatcgaatctccttctaatctctttcaatctgttgccaacatcaatgtgaaacacaatgttcaatgggttgaaagaggac |
204 |
Q |
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| T |
29608388 |
tttcttactttcaaaaatttgatcaaatctccttgtaatctctttcaacctgttg-caacgtcaatgtgaaacgcaatgttctaggggttgaaagaggac |
29608290 |
T |
|
| Q |
205 |
gagcccctaagtcaagcggaacaaatgaaacattgatcaagaatatcgtggagc---acgtaaactgcaaccttgaactgttgtagccatacctttatag |
301 |
Q |
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| T |
29608289 |
g-gctcctaagttgagtgaattgaatggatcattgatcaagaatatcatcgagcactacgtaaactgcatccttgaattgttgtagccatacctttatag |
29608191 |
T |
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| Q |
302 |
agccgtctgtgat |
314 |
Q |
| |
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|||| |||||||| |
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| T |
29608190 |
agccatctgtgat |
29608178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 83 - 313
Target Start/End: Original strand, 30476599 - 30476829
Alignment:
| Q |
83 |
caccctctcgtagaagaaacttgtacttactttcagaaatttgatcgaatctccttctaatctctttcaatctgttgccaacatcaatgtgaaacacaat |
182 |
Q |
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| T |
30476599 |
caccctctcgtaaaagaaacttgtctttactttcagcaatttgatcgaatctccttgtaatttctttcaaccttttgccgatgtcacggcgaaacacaat |
30476698 |
T |
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| Q |
183 |
gttcaatgggttgaaagaggacgagcccctaagtcaagcggaacaaatgaaacattgatcaagaatatcgtggagcacgtaaactgcaaccttgaactgt |
282 |
Q |
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| T |
30476699 |
gttctttaggttgaaacaggacgaggctttaagtctactagattcaatggaacattcatcaagaatatcatcaagcacatatacagcatctttgagttgt |
30476798 |
T |
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| Q |
283 |
tgtagccatacctttatagagccgtctgtga |
313 |
Q |
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| T |
30476799 |
tggagccataccttaatagagcggtctgtga |
30476829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 271 - 314
Target Start/End: Complemental strand, 29614381 - 29614338
Alignment:
| Q |
271 |
accttgaactgttgtagccatacctttatagagccgtctgtgat |
314 |
Q |
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| T |
29614381 |
accttgaactgttgtagccatacctttatagagccgtctgtgat |
29614338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 29873399 - 29873476
Alignment:
| Q |
84 |
accctctcgtagaagaaacttgtacttactttcagaaatttgatcgaatctccttctaatctctttcaatctgttgcc |
161 |
Q |
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| T |
29873399 |
accctcccgtagaaaaaacttgttcttactatcagcaatatcatccaatctccttgtaatctctttcaacctgttgcc |
29873476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 29854536 - 29854613
Alignment:
| Q |
84 |
accctctcgtagaagaaacttgtacttactttcagaaatttgatcgaatctccttctaatctctttcaatctgttgcc |
161 |
Q |
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| T |
29854536 |
accctcccgtagaaaaaacttgttcttactatcagcaatatcatccaatttccttgtaatctctttcaacctgttgcc |
29854613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 30207761 - 30207826
Alignment:
| Q |
98 |
gaaacttgtacttactttcagaaatttgatcgaatctccttctaatctctttcaatctgttgccaa |
163 |
Q |
| |
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| T |
30207761 |
gaaacttgtttttactttcagcaatatcatctaacctccttgtaatctctttcaatcttttgccaa |
30207826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 30401306 - 30401379
Alignment:
| Q |
88 |
tctcgtagaagaaacttgtacttactttcagaaatttgatcgaatctccttctaatctctttcaatctgttgcc |
161 |
Q |
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| T |
30401306 |
tctcgtagaagaaatttgttcttaatatcagcaatatcatccaatcttcttgtaatctctttcaacctgttgcc |
30401379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 30207903 - 30207967
Alignment:
| Q |
240 |
atcaagaatatcgtggagcacgtaaactgcaaccttgaactgttgtagccatacctttatagagc |
304 |
Q |
| |
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| T |
30207903 |
atcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccatacctttatagagc |
30207967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 168
Target Start/End: Original strand, 52353186 - 52353270
Alignment:
| Q |
84 |
accctctcgtagaagaaacttgtacttactttcagaaatttgatcgaatctccttctaatctctttcaatctgttgccaacatca |
168 |
Q |
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| T |
52353186 |
accctctcgtagaagaaacttgttcttcctttcagcaacttgatcgaatctccttgtaatttctttcaatctgtttccaatatca |
52353270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 217
Target Start/End: Complemental strand, 25292829 - 25292695
Alignment:
| Q |
83 |
caccctctcgtagaagaaacttgtacttactttcagaaatttgatcgaatctccttctaatctctttcaatctgttgccaacatcaatgtgaaacacaat |
182 |
Q |
| |
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|||||| ||| ||||||||||||| |||| || ||| ||| | ||| ||||||||| ||||||||||||| ||||||||| | | |||||||| || |
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| T |
25292829 |
caccctgtcgaagaagaaacttgttcttagttgcagcaatatcatccaatctccttgtaatctctttcaacttgttgccaatgtaatggtgaaacatgat |
25292730 |
T |
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| Q |
183 |
gttcaatgggttgaaagaggacgagcccctaagtc |
217 |
Q |
| |
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| T |
25292729 |
gttctttggtttgaaagaggatgagcctctaagtc |
25292695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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