View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15761_low_18 (Length: 286)

Name: NF15761_low_18
Description: NF15761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15761_low_18
NF15761_low_18
[»] chr8 (3 HSPs)
chr8 (15-120)||(39025468-39025573)
chr8 (150-283)||(39025304-39025438)
chr8 (208-286)||(39375869-39375947)
[»] chr3 (2 HSPs)
chr3 (220-286)||(45159271-45159337)
chr3 (220-285)||(52403689-52403754)
[»] chr7 (3 HSPs)
chr7 (231-286)||(10199021-10199076)
chr7 (220-286)||(16216319-16216385)
chr7 (237-286)||(44605106-44605155)
[»] chr4 (4 HSPs)
chr4 (220-286)||(25231930-25231996)
chr4 (220-286)||(1935819-1935885)
chr4 (229-286)||(55676130-55676187)
chr4 (220-285)||(12703924-12703989)
[»] chr1 (2 HSPs)
chr1 (229-286)||(37034204-37034261)
chr1 (220-286)||(5384059-5384125)
[»] chr5 (2 HSPs)
chr5 (237-286)||(27193945-27193994)
chr5 (220-286)||(388993-389059)


Alignment Details
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 39025573 - 39025468
Alignment:
Q  15 cctttttcactttgaccctaaaccgtcacagtgatgaaataaatgaaatatgttgtttacggagccaattctcaatttatcataagtaaattggatcccc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  39025573 cctttttcactttgaccctaaaccgtcacagtgatgaaataaatgaaatatgttgtttacggagccaatgctcaatttatcctaagtaaattggatcccc 39025474  T
Q  115 ttcaag 120  Q
    ||||||    
T  39025473 ttcaag 39025468  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 150 - 283
Target Start/End: Complemental strand, 39025438 - 39025304
Alignment:
Q  150 tggatccccttcttcttcactagtcttgatatcatagttttaaaacccggaccgg-ctagccggtccgactgtgaatcgatggtgtatccggttcgaact 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| | |||||||||||| |||||||| ||||||||||||||||| ||    
T  39025438 tggatccccttcttcttcactagtcttgatatcatagttttaaaacccggctcggaccagccggtccgaccgtgaatcggtggtgtatccggttcgagct 39025339  T
Q  249 attaatcagatcggtcatgcaattgaaccggttaa 283  Q
     |||||||||||| |||| ||||||||| ||||||    
T  39025338 gttaatcagatcgatcatacaattgaactggttaa 39025304  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 286
Target Start/End: Complemental strand, 39375947 - 39375869
Alignment:
Q  208 gccggtccgactgtgaatcgatggtgtatccggttcgaactattaatcagatcggtcatgcaattgaaccggttaaaac 286  Q
    ||||||||||| ||||| || ||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  39375947 gccggtccgaccgtgaaccggtggtgtacccggttcgagctatttatcagatcggtcatgcaattgaaccggttaaaac 39375869  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 220 - 286
Target Start/End: Complemental strand, 45159337 - 45159271
Alignment:
Q  220 gtgaatcgatggtgtatccggttcgaactattaatcagatcggtcatgcaattgaaccggttaaaac 286  Q
    |||||||| ||||||||||||||||| || || |||| |||||||||||||||||||||||||||||    
T  45159337 gtgaatcggtggtgtatccggttcgagctgtttatcatatcggtcatgcaattgaaccggttaaaac 45159271  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 52403689 - 52403754
Alignment:
Q  220 gtgaatcgatggtgtatccggttcgaactattaatcagatcggtcatgcaattgaaccggttaaaa 285  Q
    ||||| || ||||||||||||||| | || || |||||||||||||||||||||||||||||||||    
T  52403689 gtgaaccggtggtgtatccggttcaagctgtttatcagatcggtcatgcaattgaaccggttaaaa 52403754  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 286
Target Start/End: Complemental strand, 10199076 - 10199021
Alignment:
Q  231 gtgtatccggttcgaactattaatcagatcggtcatgcaattgaaccggttaaaac 286  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  10199076 gtgtacccggttcgagctatttatcagatcggtcatgcaattgaaccggttaaaac 10199021  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 16216319 - 16216385
Alignment:
Q  220 gtgaatcgatggtgtatccggttcgaactattaatcagatcggtcatgcaattgaaccggttaaaac 286  Q
    ||||| || ||||||| ||||||||| || || ||||||||||||||||||||||||||||||||||    
T  16216319 gtgaaccggtggtgtacccggttcgagctgtttatcagatcggtcatgcaattgaaccggttaaaac 16216385  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 44605106 - 44605155
Alignment:
Q  237 ccggttcgaactattaatcagatcggtcatgcaattgaaccggttaaaac 286  Q
    |||||||||||| |||||||||||||   |||||||||||||||||||||    
T  44605106 ccggttcgaactgttaatcagatcggctgtgcaattgaaccggttaaaac 44605155  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 25231930 - 25231996
Alignment:
Q  220 gtgaatcgatggtgtatccggttcgaactattaatcagatcggtcatgcaattgaaccggttaaaac 286  Q
    ||||| || ||||||||||||||||| || || |||||| |||||||||||||||||||||||||||    
T  25231930 gtgaaccggtggtgtatccggttcgagctgtttatcagaacggtcatgcaattgaaccggttaaaac 25231996  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 1935819 - 1935885
Alignment:
Q  220 gtgaatcgatggtgtatccggttcgaactattaatcagatcggtcatgcaattgaaccggttaaaac 286  Q
    ||||| || ||||||| || |||||| || || ||||||||||||||||||||||||||||||||||    
T  1935819 gtgaaccggtggtgtacccagttcgagctgtttatcagatcggtcatgcaattgaaccggttaaaac 1935885  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 55676187 - 55676130
Alignment:
Q  229 tggtgtatccggttcgaactattaatcagatcggtcatgcaattgaaccggttaaaac 286  Q
    ||||||||||||||| | || || |||||||| |||||||||||||||||||||||||    
T  55676187 tggtgtatccggttcaagctgtttatcagatcagtcatgcaattgaaccggttaaaac 55676130  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 12703924 - 12703989
Alignment:
Q  220 gtgaatcgatggtgtatccggttcgaactattaatcagatcggtcatgcaattgaaccggttaaaa 285  Q
    |||||||| ||||||| | | ||||| || || ||||||||||| |||||||||||||||||||||    
T  12703924 gtgaatcggtggtgtacctgattcgagctgtttatcagatcggttatgcaattgaaccggttaaaa 12703989  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 37034204 - 37034261
Alignment:
Q  229 tggtgtatccggttcgaactattaatcagatcggtcatgcaattgaaccggttaaaac 286  Q
    |||||||||||||| ||  | || ||||||||||||||||||||||||||||||||||    
T  37034204 tggtgtatccggtttgagttgtttatcagatcggtcatgcaattgaaccggttaaaac 37034261  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 5384059 - 5384125
Alignment:
Q  220 gtgaatcgatggtgtatccggttcgaactattaatcagatcggtcatgcaattgaaccggttaaaac 286  Q
    ||||| || |||||||  |||||||| || || ||||||| ||||||||||||||||||||||||||    
T  5384059 gtgaaccgttggtgtactcggttcgagctgtttatcagattggtcatgcaattgaaccggttaaaac 5384125  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 27193945 - 27193994
Alignment:
Q  237 ccggttcgaactattaatcagatcggtcatgcaattgaaccggttaaaac 286  Q
    |||||||||||| |||||||||||||   |||||||||||||||||||||    
T  27193945 ccggttcgaactgttaatcagatcggctgtgcaattgaaccggttaaaac 27193994  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 388993 - 389059
Alignment:
Q  220 gtgaatcgatggtgtatccggttcgaactattaatcagatcggtcatgcaattgaaccggttaaaac 286  Q
    ||||| || |||| || ||||||||| || || ||||||||| |||| |||||||||||||||||||    
T  388993 gtgaaccggtggtatacccggttcgagctgtttatcagatcgttcatacaattgaaccggttaaaac 389059  T

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