View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15761_low_2 (Length: 704)
Name: NF15761_low_2
Description: NF15761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15761_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 629; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 1 - 685
Target Start/End: Complemental strand, 36331186 - 36330493
Alignment:
| Q |
1 |
cagatgaacggcaccaacctccgaagtaaaaagtcgaaaaccaatcctcgtttgccttcatctttgaacaaacagattcaaaccaatgtccatttcgatg |
100 |
Q |
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| T |
36331186 |
cagatgaacgacaccaacctccgaagtaaaaagtcgaaaaccaatcctcgttcgccttcatctttgaacaaacagattcaaaccaatgtccatttcgatg |
36331087 |
T |
|
| Q |
101 |
aagccaccactgatgtt---tatgaatacgaggaacaagatgcagaggaagagtctatgaagaataagcgctacgaccctgtttccgtaaaggatcgcat |
197 |
Q |
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| T |
36331086 |
aagccaccactgatgttgtttatgaatacgaggaacaagatgcagaggaagagtctatgaagaataagcgctacgaccctgtttccgtaaaggatcgcat |
36330987 |
T |
|
| Q |
198 |
tccttgtcatttcaaggtagcttttccttttaacgctctgtttggatagaaatagtttcgttaagtaattatcattaatcgatcatatgtataaactacg |
297 |
Q |
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| T |
36330986 |
tccttctcatttcaaggtagcttttccttttaacgctctgtttggatagaaatagtttccttaagtaattatcattaatcgatcatatgtataaactacg |
36330887 |
T |
|
| Q |
298 |
ataaagtcaaataagccaatataattattcatgtttcaggcaactcatcccttctatttct------atttttaggatgagaatgtacaatctgataatg |
391 |
Q |
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| T |
36330886 |
ataaagtcaaataagccaatataattcttcatgtttcaggcaactcatcccttctatttctatttctatttttaggatgagaatgtacaatctgataatg |
36330787 |
T |
|
| Q |
392 |
agttcgagaatgacgatgattgttacattggaacaaagagggatgcaaatgctgagggaagacatgtgaggatgatacaaggaattactggtatgcctac |
491 |
Q |
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| T |
36330786 |
agttcgagaatgacgatgattgttacattggaacaaagagggatgcaaatgctgagggaagacatgtgaggatgatagaaggaattactggtatgcctac |
36330687 |
T |
|
| Q |
492 |
tgagacttttcaaggtaatgcagagaataagaagttgatgatgagtgatgcttttgatcctagttgcgaggttgttgtgtgtggtgatggactcattacc |
591 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36330686 |
tgagacttttcaaggtaatgcagagaataagaagttgatgatgagtgatgcttttgatcctagttgcgaggttgttgtgtgtggtgatggactcattacc |
36330587 |
T |
|
| Q |
592 |
atagaggatcttcttaatccaaattttgttgatcacaataaactaaagattagggttcaatcaattgagaagaatgctagaactatgcatacac |
685 |
Q |
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| T |
36330586 |
atagaggatcttcttaatccaaattttgttgatcacaataaactaaagattagggttcaatcaattgagaagaatggtagaactatgcatacac |
36330493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 44371862 - 44371826
Alignment:
| Q |
45 |
tcctcgtttgccttcatctttgaacaaacagattcaa |
81 |
Q |
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| T |
44371862 |
tcctcgtttgccttcatctttgaaaaaagagattcaa |
44371826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 44380717 - 44380681
Alignment:
| Q |
45 |
tcctcgtttgccttcatctttgaacaaacagattcaa |
81 |
Q |
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|||||||||||||||||||||||| ||| |||||||| |
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| T |
44380717 |
tcctcgtttgccttcatctttgaaaaaagagattcaa |
44380681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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