View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15761_low_20 (Length: 253)
Name: NF15761_low_20
Description: NF15761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15761_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 26 - 237
Target Start/End: Complemental strand, 29037773 - 29037562
Alignment:
| Q |
26 |
cgccatcactttacattttaaagcttcaacaaaatcgtgtataccaccttgttaaacttattaacattccaaaaatccacattaataagtagtaatttaa |
125 |
Q |
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| T |
29037773 |
cgccatcacgctacattttaatgcttcaacaaaatcgtgtatagcaccttgttaaacttattaacattccaaaaatccacattaataagtagtaatttaa |
29037674 |
T |
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| Q |
126 |
tataggagacttaccaaccccaataggaccaatcaggaaagacaatgtcaagagcttcattctttccacaataactaaaaataggtggtggtgtcacagc |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29037673 |
tataggagacttaccaaccccaataggaccaatcaggaaagacaatgtcaagagcttcattctttccacaataactaaaaataggtggtggtgtcacagc |
29037574 |
T |
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| Q |
226 |
ttctggtccttc |
237 |
Q |
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|||||||||||| |
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| T |
29037573 |
ttctggtccttc |
29037562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 29017803 - 29017711
Alignment:
| Q |
132 |
agacttaccaaccccaataggaccaatcaggaaagacaatgtcaagagcttcattctttccacaataactaaaaataggtggtggtgtcacag |
224 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||| ||||||||| |
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| T |
29017803 |
agacttaccaaccccaaaaggaccaatcaggaaagacaatatcaagagcatcattttgtccacaataactaaaaataggtggtagtgtcacag |
29017711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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