View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15761_low_21 (Length: 248)

Name: NF15761_low_21
Description: NF15761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15761_low_21
NF15761_low_21
[»] chr8 (2 HSPs)
chr8 (4-239)||(29742899-29743134)
chr8 (4-238)||(29735195-29735429)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 29742899 - 29743134
Alignment:
Q  4 cgactgaaatgaatagctttgaactgtactcctgattcatagactttatctctatttgtttttggatgctgctacattattgagagttccaaagagaaga 103  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29742899 cgacagaaaggaatagctttgaactgtactcctgattcatagactttatctctatttgtttttggatgctgctacattattgagagttccacagagaaga 29742998  T
Q  104 tattgatacaggatacaggtaccttaaattataaagctctattgacatggaggactcgtgtggaatgtggatgcatgaactatttatttannnnnnngac 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||    
T  29742999 tattgatacaggatacaggtaccttaaattataaagctctattgacatggaggactcgtgtggaatgtggatgcatgaactatttatttatttttttgac 29743098  T
Q  204 caaagatgcatgatttagctatgcacgtgatgatgt 239  Q
    ||||||||||||||||||||||||||||||||||||    
T  29743099 caaagatgcatgatttagctatgcacgtgatgatgt 29743134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 29735195 - 29735429
Alignment:
Q  4 cgactgaaatgaatagctttgaactgtactcctgattcatagactttatctctatttgtttttggatgctgctacattattgagagttccaaagagaaga 103  Q
    |||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29735195 cgacagaaaggaatagctttgaactgtactcttgattcatagactttatctctatttgtttttggatgctgctacattattgagagttccacagagaaga 29735294  T
Q  104 tattgatacaggatacaggtaccttaaattataaagctctattgacatggaggactcgtgtggaatgtggatgcatgaactatttatttannnnnnngac 203  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||        |||    
T  29735295 tattgatacaggatacaggtaccttaaattataaagctctatggacatggaggactcgtgtggaatgtggatgcatgaactatttatttttatttttgac 29735394  T
Q  204 caaagatgcatgatttagctatgcacgtgatgatg 238  Q
    |||||||||||||||||||||||||||||||||||    
T  29735395 caaagatgcatgatttagctatgcacgtgatgatg 29735429  T

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