View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15761_low_23 (Length: 215)
Name: NF15761_low_23
Description: NF15761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15761_low_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 36376409 - 36376227
Alignment:
| Q |
16 |
aatatgataatattaacactcaattgaatcctgccttccggaaaaagcaacccttttctccaatccaacataaaaaatattcaatcttctaattatattg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36376409 |
aatatgataatattaacactcaattgaatcctgccttctggaaaaagcaacccttttctccaatccaacataaaaaatattcaatcttctaattatattg |
36376310 |
T |
|
| Q |
116 |
ggaaaatgacagaaaagtttctgtgaacaattattaaaagaaaaaatttcaaacttttttattctcttgttttgtttcactatc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36376309 |
ggaaaatgacagaaaagtttctgtgaacaatcattaaaagaaaaaatttcaaact-ttttattctcttgttttgtttcactatc |
36376227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University