View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15761_low_4 (Length: 541)
Name: NF15761_low_4
Description: NF15761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15761_low_4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 8 - 541
Target Start/End: Complemental strand, 34466755 - 34466222
Alignment:
| Q |
8 |
gcagaacctgtgtatatgcagctgtgtaagcaaaacattcatattttatagatgaccgatattggtcaattcatttatgctggcgcgttctacatatata |
107 |
Q |
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| T |
34466755 |
gcagaaactgtgtatatgcagctgtgtaagcaaaacattcatattttatagatgaccgatattggtcaattcatttatgctggcgcgttctacatatata |
34466656 |
T |
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| Q |
108 |
ttttgcacaagatctatggtcaaggtaggggtacattgagnnnnnnntaatagccttacaagagatatagagagaaagatgagaatctaacgattatgag |
207 |
Q |
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| T |
34466655 |
ttttgcacaagatctatggtcaaggtaggggtacattgagaaaaaaataatagccttacaagagatatagagagaaagatgagaatctaacgattatgag |
34466556 |
T |
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| Q |
208 |
tgatataagtaaagaaagatgagaatctaacgattcatacctcaaacttatgatttgaagtggatttgataagtttatatatgagttgttcggtcttcgt |
307 |
Q |
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| T |
34466555 |
tgatataagtaaagaaagatgagaatctaacgattcatacctcaaacttatgatttgaaaaggatttgataagtttatatatgagttattcggtcttcgt |
34466456 |
T |
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| Q |
308 |
caaacgaccaaaatggttttacggtgtgactatgagtttctattgattccaaggaaactgaatccttgttaaacattagcatttggcagcaagttttctt |
407 |
Q |
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| T |
34466455 |
caaacgaccaaaatggttttacggtgtgactatgagtttctattgattccaaggaaactgaatccttgttaaacattagcatttggcagcaagttttctt |
34466356 |
T |
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| Q |
408 |
tactgcttgcatacaaaataaaattaaattggaaagactataaaagaaatacaatttgggtagatttcaattagggtgatagaataaactataatgatat |
507 |
Q |
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| T |
34466355 |
tactgcttgcatacaaaattaaattaaattggaaagactataaaagaaatacaatttgggcagattttaattagggtgatagaataaactataatgatat |
34466256 |
T |
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| Q |
508 |
tgtacgtccgaaaatattgcctaaacatatttgc |
541 |
Q |
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| T |
34466255 |
tgtacgtccgaaaatattgcctaaacatatttgc |
34466222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 374 - 506
Target Start/End: Complemental strand, 34464981 - 34464851
Alignment:
| Q |
374 |
tgttaaacattagcatttggcagcaagttttctttactgcttgcatacaaaataaaattaaattggaaagactataaaagaaatacaatttgggtagatt |
473 |
Q |
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| T |
34464981 |
tgttaaacattagcatttcccagaaagttt-cttaactgcttgcatgcaaaattaaattaaattgaaaa-actgtaaaagaaatacaatttgggtgaatt |
34464884 |
T |
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| Q |
474 |
tcaattagggtgatagaataaactataatgata |
506 |
Q |
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| T |
34464883 |
ttaactagagtgattgaacaaactatattgata |
34464851 |
T |
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