View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15761_low_5 (Length: 537)
Name: NF15761_low_5
Description: NF15761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15761_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 3204010 - 3204508
Alignment:
| Q |
1 |
gcgttatccgtatctttcttgaactacaaaggtgaaaattataaagtattagctacaacctcattgcataaagtatactttaatttttatcatattctta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3204010 |
gcgttatccgtatctttcttgaactacaaaggtgaaaattataaagtattagctacaacctcattgcataaagtatactttaatttttatcatattctta |
3204109 |
T |
|
| Q |
101 |
cttacaattatgaaaccagctagtggcataatattattggaatttaattcatatgcacttagacttttctctgtctttgaattttggcatcgagttattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3204110 |
cttacaattatgaaaccagctagtggcataatattattggaatttaattcatatgcacttagacttttctctgtctttgaattttggcatcgggttattg |
3204209 |
T |
|
| Q |
201 |
gtgggtcgaggttttggtcaggttaattaaggtgtatgctctggtggctcgtgagttgaggggtgtctttttgacttgtgtcagagtcttgtggaccgat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| || |
|
|
| T |
3204210 |
gtgggtcgaggttttggtcaggttaattaaggtgtatgctctggtggctcgtgagttgaggggtgcctttttaacttgtgtcagagtcttgtggaccaat |
3204309 |
T |
|
| Q |
301 |
cgtttttgattcgaggtcgggagcaagtttgtgacttaggttcttttaggctgttgtgatgtctcctccgatataccagaacttgagtggtggtcaaagc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3204310 |
cgtttttgattcgaggtcgggagcaagtttgtgacttagattcttttaggctgttgtgatgtctcctccgatatactagaacttgagtggtggtcaaagc |
3204409 |
T |
|
| Q |
401 |
tgaacatttggagcaaaatctttttcgagtgccattttgatcactattgacggtgttggttctttgaggagttgttgttaggggattagcattttggggc |
500 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3204410 |
tgaac-gttggagcaaaatcttttccgagtgcctttttgatcactattgacggtgttggttctttgaggagttgttgttaggggattagcattttggggc |
3204508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 164 - 487
Target Start/End: Original strand, 35846990 - 35847311
Alignment:
| Q |
164 |
cttttctctgtctttgaattttggcatcgagttattggtgggtcgaggttttggtcaggttaattaaggtgtatgctctggtggctcgtgagttgagggg |
263 |
Q |
| |
|
||||||| |||||||| |||||||||||| |||||||||||||| || |||||| || | ||||||||| ||||||||||| | ||||||||| ||| |
|
|
| T |
35846990 |
cttttctttgtctttggattttggcatcgggttattggtgggtcaagtttttggacatg----ttaaggtgtctgctctggtggtttgtgagttgatggg |
35847085 |
T |
|
| Q |
264 |
tgtc-tttttgacttgtgtc-agagtcttgtggaccgatcgtttttgattcgaggtcgggagcaagtttgtgacttaggttcttttaggctgttgtgatg |
361 |
Q |
| |
|
|| | ||||||||||||||| |||| |||||| ||||||| |||||||||||||||||||||| |||||||||| ||| ||||||||||| ||||||| |
|
|
| T |
35847086 |
tgccttttttgacttgtgtcgggagttttgtgggccgatcgattttgattcgaggtcgggagcacgtttgtgactcgggtccttttaggctgctgtgatg |
35847185 |
T |
|
| Q |
362 |
tctcctccgatataccagaacttgagtggtggtcaaagctgaacatttggagcaaaatctttttcgagtgccattttgatcactattgacggtgttggtt |
461 |
Q |
| |
|
|||||||||||| ||| | ||||||||||||||| ||||||||| |||| ||||||||| | ||| ||||| ||||| | | ||| ||||||||||| |
|
|
| T |
35847186 |
tctcctccgatagaccgggacttgagtggtggtcgaagctgaacgtttgaagcaaaatcactatcgggtgcctaattgataaatgttggcggtgttggtt |
35847285 |
T |
|
| Q |
462 |
ctttgaggagttgttgttaggggatt |
487 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
35847286 |
ctttgaggagttgttgttaggggatt |
35847311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 163 - 496
Target Start/End: Complemental strand, 42742524 - 42742196
Alignment:
| Q |
163 |
acttttctctgtctttgaattttggcatcgagttattggtgggtcgaggttttggtcaggttaattaaggtgtatgctctggtggctcgtgagttgaggg |
262 |
Q |
| |
|
|||||||||||| |||| |||||||||||| |||||||||||||| || ||||| |||| || |||||| ||||||||||| ||||| |||| ||| |
|
|
| T |
42742524 |
acttttctctgtttttggattttggcatcgggttattggtgggtcaagtttttgaacagg----tttaggtgtctgctctggtggttcgtgggttgtggg |
42742429 |
T |
|
| Q |
263 |
gtgtctttttgacttgtgtc-agagtcttgtggaccgatcgtttttgattcgaggtcgggagcaagtttgtgacttaggttcttttaggctgttgtgatg |
361 |
Q |
| |
|
||| |||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||| | || ||||||||||||||||||| |
|
|
| T |
42742428 |
gtgcctttttgacttgtgtcgggagtcttgtgg-gcgatcgcttttgattcgaggtcgggagcaagtttgtgactcatgtccttttaggctgttgtgatg |
42742330 |
T |
|
| Q |
362 |
tctcctccgatataccagaacttgagtggtggtcaaagctgaacatttggagcaaaatctttttcgagtgccattttgatcactattgacggtgttggtt |
461 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||| || || |||| || |||||| ||| ||||| ||| ||||| || |||||||||||| |
|
|
| T |
42742329 |
tctcctccgatagactggaacttgagtggtggtcaaagttgtacgtttgaaggaaaatc-acttcaggtgcctaattg-tcactgttcacggtgttggtt |
42742232 |
T |
|
| Q |
462 |
ctttgaggagttgttgttaggggatt-agcattttg |
496 |
Q |
| |
|
|||||||||| |||||||||||| || ||||||||| |
|
|
| T |
42742231 |
ctttgaggagctgttgttaggggtttcagcattttg |
42742196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 228 - 484
Target Start/End: Original strand, 39368815 - 39369071
Alignment:
| Q |
228 |
taaggtgtatgctctggtggctcgtgagttgaggggtgtctttttgacttgtgtcag-agtcttgtggaccgatcgtttttgattcgaggtcgggagcaa |
326 |
Q |
| |
|
|||||||| | | ||||||| |||||||||||| ||||||||||||||||||||| | |||||||||| |||| || ||||||||||||||||||||||| |
|
|
| T |
39368815 |
taaggtgtcttccctggtggttcgtgagttgagaggtgtctttttgacttgtgtcgggagtcttgtgggccgaccgcttttgattcgaggtcgggagcaa |
39368914 |
T |
|
| Q |
327 |
gtttgtgacttaggttcttttaggctgttgtgatgtctcctccgatataccagaacttgagtggtggtcaaagctgaacatttggagcaaaatctttttc |
426 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||||| ||||||||| | ||| | || |||||||||||| ||||||||| |||| ||||| || ||| |
|
|
| T |
39368915 |
gtttttgactcaggttcttttaggttgttgtgttgtctcctcagtgcgaccgggacgtgagtggtggtcgaagctgaacgtttgaagcaatgtc-acttc |
39369013 |
T |
|
| Q |
427 |
gagtgccattttgatcactattgacggtgttggttctttgaggagttgttgttagggg |
484 |
Q |
| |
|
| ||||| | || |||||| ||| || ||||||||||| |||||| |||||||||||| |
|
|
| T |
39369014 |
gggtgccttatttatcactgttggcgatgttggttcttggaggagctgttgttagggg |
39369071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 164 - 484
Target Start/End: Original strand, 29685719 - 29686036
Alignment:
| Q |
164 |
cttttctctgtctttgaattttggcatcgagttattggtgggtcgaggttttggtcaggttaattaaggtgtatgctctggtggctcgtgagttgagggg |
263 |
Q |
| |
|
|||||||||||||||| | |||||||| ||||||||||||| ||| ||||| |||||||| || || ||||||||||| ||||||||||||| | |
|
|
| T |
29685719 |
cttttctctgtctttggaatttggcatatggttattggtgggttgagtttttgaacaggttaa----ggggtctgctctggtggttcgtgagttgaggag |
29685814 |
T |
|
| Q |
264 |
tgtctttttgacttgtgtcag-agtcttgtggaccgatcgtttttgattcgaggtcgggagcaagtttgtgacttaggttcttttaggctgttgtgatgt |
362 |
Q |
| |
|
| ||| |||| |||||| | ||||| ||| ||||| ||||||||||| ||||||||| ||||||||||| || | |||||||||| |||||| || |
|
|
| T |
29685815 |
taccttaatgacctgtgtcgggagtctaatgggtcgatcacttttgattcgaagtcgggagctagtttgtgactcagatccttttaggcttttgtgaagt |
29685914 |
T |
|
| Q |
363 |
ctcctccgatataccagaacttgagtggtggtcaaagctgaacatttggagcaaaatctttttcgagtgccattttgatcactattgacggtgttggttc |
462 |
Q |
| |
|
||||||||||| ||| ||| ||| |||||||| ||||||||| |||| |||||| || || || |||| |||| |||| |||| ||||||||||| |
|
|
| T |
29685915 |
ctcctccgatagaccggaatttgtgtggtggtggaagctgaacgtttgaagcaaagtcattatcaggtgcttaattgaccactgttgatggtgttggttc |
29686014 |
T |
|
| Q |
463 |
tttgaggagttgttgttagggg |
484 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
29686015 |
tttgaggagttgttgttagggg |
29686036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 319 - 487
Target Start/End: Original strand, 25362318 - 25362486
Alignment:
| Q |
319 |
gggagcaagtttgtgacttaggttcttttaggctgttgtgatgtctcctccgatataccagaacttgagtggtggtcaaagctgaacatttggagcaaaa |
418 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||| |||| ||| |||||||||||||| | ||||||||| |||| ||||||| |
|
|
| T |
25362318 |
gggagcaagtttgtgactcaggtccttttaggctgttgtgatgtctccattgatagaccggaacttgagtggtgattgaagctgaacgtttgaagcaaaa |
25362417 |
T |
|
| Q |
419 |
tctttttcgagtgccattttgatcactattgacggtgttggttctttgaggagttgttgttaggggatt |
487 |
Q |
| |
|
||| | ||| ||||| ||||||||| ||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25362418 |
tctctatcgggtgcctaattgatcactgttggcggtgttagttctttgaggagttgttgttaggggatt |
25362486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 173 - 420
Target Start/End: Original strand, 2706963 - 2707207
Alignment:
| Q |
173 |
gtctttgaattttggcatcgagttattggtgggtcgaggttttggtcaggttaattaaggtgtatgctctggtggctcgtgagttgaggggtgtcttttt |
272 |
Q |
| |
|
||||||| | ||||||||| |||||||||| | |||| | |||| |||||||| |||| ||||| ||||| ||||||||||||||||| || | |
|
|
| T |
2706963 |
gtctttggaatttggcatctggttattggtgtgccgagttcttggacaggttaa----ggtgcctgctccggtggttcgtgagttgaggggtgctttaat |
2707058 |
T |
|
| Q |
273 |
gacttgtgtcag-agtcttgtggaccgatcgtttttgattcgaggtcgggagcaagtttgtgacttaggttcttttaggctgttgtgatgtctcctccga |
371 |
Q |
| |
|
|||||||||| | ||||| ||| ||||||| ||||||||||||||||||||| ||||||||||| | || |||||||||| ||| |||||||||||| |
|
|
| T |
2707059 |
gacttgtgtcgggagtctagtgaaccgatcacttttgattcgaggtcgggagctagtttgtgactcatgtccttttaggcttttgcattgtctcctccga |
2707158 |
T |
|
| Q |
372 |
tataccagaacttgagtggtggtcaaagctgaacatttggagcaaaatc |
420 |
Q |
| |
|
| | | |||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
2707159 |
aagatcgtaacttgagtggtggtcaaagctgaacgtttgaagcaaaatc |
2707207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 161
Target Start/End: Complemental strand, 3512457 - 3512377
Alignment:
| Q |
81 |
taatttttatcatattcttacttacaattatgaaaccagctagtggcataatattattggaatttaattcatatgcactta |
161 |
Q |
| |
|
||||||| |||||||||||| ||||||||| |||| ||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3512457 |
taattttaatcatattcttaattacaattacgaaatcagatagtggcgtaatattattggaatttaattcatatgcactta |
3512377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 3512564 - 3512485
Alignment:
| Q |
4 |
ttatccgtatctttcttgaactacaaaggtgaaaat--tataaagtattagctacaacctcattgcataaa-gtatactt |
80 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3512564 |
ttatccgtatctttcttaaactacaaaggtgaaaatcatataaagtattagctacaacctcattgcataaatgtatactt |
3512485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 328 - 420
Target Start/End: Original strand, 40377649 - 40377741
Alignment:
| Q |
328 |
tttgtgacttaggttcttttaggctgttgtgatgtctcctccgatataccagaacttgagtggtggtcaaagctgaacatttggagcaaaatc |
420 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||| ||| || ||||||||||||| || |||||| |||| || |||||| |
|
|
| T |
40377649 |
tttgtgactcaggtccttttaggctgttgtgatgtctcctccgatagaccggatcttgagtggtggtggaacctgaacgtttgaagtaaaatc |
40377741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 483
Target Start/End: Original strand, 17218822 - 17218924
Alignment:
| Q |
381 |
acttgagtggtggtcaaagctgaacatttggagcaaaatctttttcgagtgccattttgatcactattgacggtgttggttctttgaggagttgttgtta |
480 |
Q |
| |
|
||||||||||||||| ||||||||| |||| ||||||||| | | | ||||| ||| ||||| ||| ||||||||||||||||| |||||||||||| |
|
|
| T |
17218822 |
acttgagtggtggtcgaagctgaacttttgaagcaaaatcactattgggtgcctaattgttcactgttggcggtgttggttctttgatgagttgttgtta |
17218921 |
T |
|
| Q |
481 |
ggg |
483 |
Q |
| |
|
||| |
|
|
| T |
17218922 |
ggg |
17218924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 3500382 - 3500318
Alignment:
| Q |
4 |
ttatccgtatctttcttgaactacaaaggtgaaaattata--aagtattagctacaacctcattg |
66 |
Q |
| |
|
|||| |||||||| ||||||| |||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
3500382 |
ttattcgtatcttacttgaaccacaaaggtgaaagttatacaaagtattagctacaacctcattg |
3500318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 227 - 418
Target Start/End: Original strand, 25341650 - 25341843
Alignment:
| Q |
227 |
ttaaggtgtatgctctggtggctcgtgagttgaggggtgtctttttgacttgtgtcag-agtcttgtggaccgatcgtttttgattcgaggtcgggagca |
325 |
Q |
| |
|
||||||| | |||||||||| ||||||||| ||||||| ||| ||| |||||| | ||||| |||| |||||| |||||||| ||| | | ||| |
|
|
| T |
25341650 |
ttaaggtttctgctctggtgcttcgtgagttcaggggtgccttgatgatgtgtgtcgggagtctggtgggccgatcacttttgatttgagattgagagtt |
25341749 |
T |
|
| Q |
326 |
ag-tttgtgacttaggttcttttaggctgttgtgatgtctcctccgatataccagaacttgagtggtggtcaaagctgaacatttggagcaaaa |
418 |
Q |
| |
|
|| ||| |||| |||| |||||||||| |||||||||||||||||| ||| ||| |||| ||||||| ||||||||| ||| |||||||| |
|
|
| T |
25341750 |
agatttttgacacaggtccttttaggcttttgtgatgtctcctccgactgaccggaagttgattggtggtagaagctgaacgttttgagcaaaa |
25341843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 3651219 - 3651289
Alignment:
| Q |
4 |
ttatccgtatctttcttgaactacaaaggtgaaaat--tataaagtattagctacaacctcattgcataaa |
72 |
Q |
| |
|
|||| ||||| |||||||||| |||| ||||||||| ||||||||||||||| |||| | |||||||||| |
|
|
| T |
3651219 |
ttattcgtatatttcttgaaccacaacggtgaaaattatataaagtattagcttcaacattattgcataaa |
3651289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 18557489 - 18557544
Alignment:
| Q |
227 |
ttaaggtgtatgctctggtggctcgtgagttgaggggtgtctttttgacttgtgtc |
282 |
Q |
| |
|
||||||||| | ||||||||| ||||||||||||||||| | |||||| ||||||| |
|
|
| T |
18557489 |
ttaaggtgtctactctggtgggtcgtgagttgaggggtgccgttttgatttgtgtc |
18557544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 402
Target Start/End: Complemental strand, 2334755 - 2334698
Alignment:
| Q |
344 |
ttttaggctgttgtgatgtctcctccgatataccagaacttgagtggtggtcaaagctg |
402 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| |||||||||||||||| |||||| |
|
|
| T |
2334755 |
ttttaggctgttgtgatgtctcct-cgagttaccgaaacttgagtggtggtcgaagctg |
2334698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 164 - 496
Target Start/End: Original strand, 16284960 - 16285288
Alignment:
| Q |
164 |
cttttctctgtctttgaattttggcatcgagttattggtgggtcgaggttttggtcaggttaattaaggtgtatgctctggtggctcgtgagttgagggg |
263 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| ||||||||||||||| |||||| |||||||| ||||| |||||| |||| ||||||||||||||| |
|
|
| T |
16284960 |
cttttcgctgtctttga-ttttggcatcgagctattggtgggtcgagtttttggacaggttaa----ggtgtctgctcttgtggttcgtgagttgagggg |
16285054 |
T |
|
| Q |
264 |
tgtctttttgacttgtgtcag-agtcttgtggaccgatcgtttttgattcgaggtcgggagcaagtttgtgacttaggttcttttaggctgttgtgatgt |
362 |
Q |
| |
|
|| |||||||||| ||||| | |||||||||| ||||||| |||||||||||||||||||||||||||| |||| |||| ||||||||||||||||| | |
|
|
| T |
16285055 |
tgcctttttgactagtgtctggagtcttgtgggccgatcgcttttgattcgaggtcgggagcaagtttgcgactcaggtccttttaggctgttgtgacgg |
16285154 |
T |
|
| Q |
363 |
ctcctccgatataccagaacttgagtggtggtcaaagctgaacatttggagcaaaatctttttcgagtgccattttgatcactattgacggtgttggttc |
462 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| | ||| ||||| || |||||| ||| |||||||||||| |
|
|
| T |
16285155 |
ctcctccgataaaccggaacttgagtggtggtcaaagctgaacatttgaagcaaaatcactatcgggtgcctaattaatcactgttggcggtgttggttc |
16285254 |
T |
|
| Q |
463 |
tttgaggagttgttgttaggggattagcattttg |
496 |
Q |
| |
|
||| |||| |||||||||||| || |||||||| |
|
|
| T |
16285255 |
tttaaggaactgttgttaggggtttggcattttg |
16285288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 164 - 483
Target Start/End: Original strand, 45181487 - 45181803
Alignment:
| Q |
164 |
cttttctctgtctttgaattttggcatcgagttattggtgggtcgaggttttggtcaggttaattaaggtgtatgctctggtggctcgtgagttgagggg |
263 |
Q |
| |
|
||||| |||||||||| |||||||||| | ||||||||||||||||| |||||| ||||||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
45181487 |
cttttttctgtctttggattttggcattgggttattggtgggtcgagtttttggacaggttag----ggtgtctgctctggtggttcgtgagttgagggg |
45181582 |
T |
|
| Q |
264 |
tgtctttttgacttgtgtcag-agtcttgtggaccgatcgtttttgattcgaggtcgggagcaagtttgtgacttaggttcttttaggctgttgtgatgt |
362 |
Q |
| |
|
|| ||||||||||| |||| | |||||||||| || |||| ||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
45181583 |
tgcctttttgacttttgtcgggagtcttgtgggccaatcgcttttgattcgaggtcggaagcaagtttgtgactcaggtccttttaggctgttgtgatgt |
45181682 |
T |
|
| Q |
363 |
ctcctccgatataccagaacttgagtggtggtcaaagctgaacatttggagcaaaatctttttcgagtgccattttgatcactattgacggtgttggttc |
462 |
Q |
| |
|
||||| ||||| ||| |||||| |||||||||| ||||| ||||| || | ||| ||| | || |||||| |||||||| ||| |||||||||||| |
|
|
| T |
45181683 |
ctccttcgatagaccggaacttaagtggtggtcgaagctaaacatctgaatcaatatcactatcaagtgcctaattgatcaccgttggcggtgttggttc |
45181782 |
T |
|
| Q |
463 |
tttgaggagttgttgttaggg |
483 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
45181783 |
tttgaggagctgttgttaggg |
45181803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 164 - 487
Target Start/End: Complemental strand, 17324345 - 17324025
Alignment:
| Q |
164 |
cttttctctgtctttgaattttggcatcgagttattggtgggtcgaggttttggtcaggttaattaaggtgtatgctctggtggctcgtgagttgagggg |
263 |
Q |
| |
|
|||||| | ||||||| |||||| ||||| ||||||||||||||||| |||||| ||||| | ||||| | ||| ||||| ||||||||||||||| |
|
|
| T |
17324345 |
cttttccccgtctttggattttgacatcgggttattggtgggtcgagtttttggataggttta----ggtgtctactccggtggttcgtgagttgagggg |
17324250 |
T |
|
| Q |
264 |
tgtctttttgacttgtgtca-gagtcttgtggaccgatcgtttttgattcgaggtcgggagcaagtttgtgacttaggttcttttaggctgttgtgatgt |
362 |
Q |
| |
|
|| |||||| |||| |||| ||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||| |||||| ||| ||||||||| |
|
|
| T |
17324249 |
tgccttttttacttatgtcgtgagtcttgtgggccgatctcttttgattcgaggtcgggagcaagtttctgacttaggtccttttaagctattgtgatgt |
17324150 |
T |
|
| Q |
363 |
ctcctccgatataccagaacttgagtggtggtcaaagctgaacatttggagcaaaatctttttcgagtgccattttgatcactattgacggtgttggttc |
462 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| ||||||||| |||| ||||||||| | || ||| | ||||||||| ||| |||||||||||| |
|
|
| T |
17324149 |
ctcctccgatatactggaactagagtggtggtcgaagctgaacgtttgaagcaaaatcactatcaggtgtcgaattgatcactgttggcggtgttggttc |
17324050 |
T |
|
| Q |
463 |
tttgaggagttgttgttaggggatt |
487 |
Q |
| |
|
|||||||||||||||| |||||||| |
|
|
| T |
17324049 |
tttgaggagttgttgtcaggggatt |
17324025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 484
Target Start/End: Original strand, 29016508 - 29016688
Alignment:
| Q |
304 |
ttttgattcgaggtcgggagc-aagtttgtgacttaggttcttttaggctgttgtgatgtctcctccgatataccagaacttgagtggtggtcaaagctg |
402 |
Q |
| |
|
|||| ||||||||||| |||| || ||||||| | |||| |||||||| | ||| |||||||||||||||| ||| ||| ||||||||||||| ||||| |
|
|
| T |
29016508 |
ttttaattcgaggtcgagagctaattttgtgattaaggtccttttaggtttttgggatgtctcctccgatagaccggaatttgagtggtggtcgaagctc |
29016607 |
T |
|
| Q |
403 |
aacatttggagcaaaatctttttcgagtgccattttgatcactattgacggtgttggttctttgaggagttgttgttagggg |
484 |
Q |
| |
|
|| |||| ||| ||||| || ||| |||| |||| | | |||| ||||||||||| ||||| ||||||||||||||| |
|
|
| T |
29016608 |
aatgtttgaagc-aaatcattatcgggtgcgtaattgaactatgttgatggtgttggttccttgagtagttgttgttagggg |
29016688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 183 - 352
Target Start/End: Complemental strand, 2782238 - 2782071
Alignment:
| Q |
183 |
tttggcatcgagttattggtgggtcgaggttttggtcaggttaattaaggtgtatgctctggtggctcgtgagttgaggggtgtctttttgacttgtgtc |
282 |
Q |
| |
|
||||||||| || || ||||||| |||| |||||| |||||||| ||||| ||||||||||| | ||||||||||||||| ||| ||| ||||||| |
|
|
| T |
2782238 |
tttggcatctagataatggtgggccgagtttttggacaggttaa----ggtgtctgctctggtggtttgtgagttgaggggtgccttaatgatttgtgtc |
2782143 |
T |
|
| Q |
283 |
-agagtcttgtggaccgatcgtttttgattcgaggtcgggagcaag-tttgtgacttaggttcttttaggct |
352 |
Q |
| |
|
||||||| |||| ||||| |||||||| || |||||||| || ||| ||||| | ||||||||||||| |
|
|
| T |
2782142 |
gagagtctggtgggacgatcacttttgattttagatcgggagccagttttttgactaaagttcttttaggct |
2782071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 231 - 347
Target Start/End: Complemental strand, 3968675 - 3968557
Alignment:
| Q |
231 |
ggtgtatgctctggtggctcgtgagttgaggggtgtctttttgacttgtgtc-agagtcttgtggaccgatcgtttttgattcgaggtcgggagcaag-t |
328 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| ||| ||| ||||||| |||||| ||||||| |||| ||||| |||||| || ||||| || | |
|
|
| T |
3968675 |
ggtgtctgctctggtggttcgtgagttgaggggtgccttgatgatttgtgtcgggagtctggtggaccaatcgcttttgcttcgagatcaggagctagtt |
3968576 |
T |
|
| Q |
329 |
ttgtgacttaggttctttt |
347 |
Q |
| |
|
|| ||||| |||||||||| |
|
|
| T |
3968575 |
ttttgactcaggttctttt |
3968557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 330
Target Start/End: Original strand, 4000130 - 4000230
Alignment:
| Q |
231 |
ggtgtatgctctggtggctcgtgagttgaggggtgtctttttgacttgtgtc-agagtcttgtggaccgatcgtttttgattcgaggtcgggagcaagtt |
329 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| ||| ||| ||||||| |||||| ||||||| |||| ||||| |||||| || ||||| |||| |
|
|
| T |
4000130 |
ggtgtctgctctggtggttcgtgagttgaggggtgccttgatgatttgtgtcgggagtctggtggaccaatcgcttttgcttcgagatcaggagctagtt |
4000229 |
T |
|
| Q |
330 |
t |
330 |
Q |
| |
|
| |
|
|
| T |
4000230 |
t |
4000230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 487
Target Start/End: Complemental strand, 35571495 - 35571444
Alignment:
| Q |
436 |
tttgatcactattgacggtgttggttctttgaggagttgttgttaggggatt |
487 |
Q |
| |
|
|||||||||| || ||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
35571495 |
tttgatcactttttgcggtgttagttctttgaggagttgttattaggggatt |
35571444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 1e-82; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 164 - 496
Target Start/End: Complemental strand, 26500467 - 26500133
Alignment:
| Q |
164 |
cttttctctgtctttgaattttggcatcgagttattggtg--ggtcgaggtttt--ggtcaggttaattaaggtgtatgctctggtggctcgtgagttga |
259 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||| |||| || |||||||| |||||||||||| |||| ||||||||||| |
|
|
| T |
26500467 |
cttttctctgtctttgaattttggcatcaggttattggtgtgggtcgagtttttttggacaggttaa----ggtgtatgctctagtggttcgtgagttga |
26500372 |
T |
|
| Q |
260 |
ggggtgtctttttgacttgtgtcaga-gtcttgtggaccgatcgtttttgattcgaggtcgggagcaagtttgtgacttaggttcttttaggctgttgtg |
358 |
Q |
| |
|
|||||| |||||||||||||||| || ||||||||| |||||| ||||||||||||||||||||||||||||||||| | || |||||||||||||||| |
|
|
| T |
26500371 |
ggggtgcctttttgacttgtgtcggaagtcttgtgggtcgatcgcttttgattcgaggtcgggagcaagtttgtgactcaagtccttttaggctgttgtg |
26500272 |
T |
|
| Q |
359 |
atgtctcctccgatataccagaacttgagtggtggtcaaagctgaacatttggagcaaaatctttttcgagtgccattttgatcactattgacggtgttg |
458 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||| ||||||||| |||| ||||||||| | ||| |||| | || | |||| ||| ||||||| |
|
|
| T |
26500271 |
atgtctcctccgatagaccggaacttgagtggtggtcgaagctgaacgtttgaagcaaaatcaatatcgggtgctttattcaccactgttggtggtgttg |
26500172 |
T |
|
| Q |
459 |
gttctttgaggagttgttgttaggggatt-agcattttg |
496 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
26500171 |
gttctttgaggagctgttgttaggggattcagcattttg |
26500133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 164 - 484
Target Start/End: Original strand, 1799039 - 1799363
Alignment:
| Q |
164 |
cttttctctgtctttgaattttggcatcgagttattggtgggtcgaggttttggtcaggttaattaaggtgtatgctctggtggctcgtgagttgagggg |
263 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||| |||||| ||| ||||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
1799039 |
cttttctctgtctttggattttggcatcgggttattggtgggtcgagtttttggatagg----ttaaggtgtctgctccggtggttcgtgagttgagggg |
1799134 |
T |
|
| Q |
264 |
tgtctttttgacttgtgtca-gagtcttgtggaccgatcgtttttgattcgaggtcgggagcaagtttgtgacttaggttcttttaggctgttgtgatgt |
362 |
Q |
| |
|
|| ||||||||||||||| | ||||||||| |||| | || ||||||||| ||||| |||||||||||||| || |||| |||||||||| ||||||||| |
|
|
| T |
1799135 |
tgcctttttgacttgtgtaaggagtcttgttgaccaaacgcttttgattctaggtcaggagcaagtttgtgtctcaggtccttttaggctattgtgatgt |
1799234 |
T |
|
| Q |
363 |
ctcctccgatataccagaacttgagtggtggtcaaagctgaacatttggagcaaaatctttttcgagtgccattttgatcactatt----gacg---gtg |
455 |
Q |
| |
|
||||||||||| |||| || ||||||||||||| ||||||| | |||| ||||| ||| || ||| ||||| ||||||||||| || |||| ||| |
|
|
| T |
1799235 |
ctcctccgataaaccaaaatttgagtggtggtcgaagctgatcgtttgaagcaacatcattatcgggtgcctttttgatcactgttggcagacggcagtg |
1799334 |
T |
|
| Q |
456 |
ttggttctttgaggagttgttgttagggg |
484 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
1799335 |
ttggttctttgaggagctgttgttagggg |
1799363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 164 - 419
Target Start/End: Original strand, 10388454 - 10388706
Alignment:
| Q |
164 |
cttttctctgtctttgaattttggcatcgagttattggtgggtcgaggttttggtcaggttaattaaggtgtatgctctggtggctcgtgagttgagggg |
263 |
Q |
| |
|
||||||||| |||||| |||||||||||| ||||||| |||||| || ||| || || || || ||||| |||||| ||| |||||||||||||| |
|
|
| T |
10388454 |
cttttctctctctttggattttggcatcgggttattgatgggtcaagttttgggacatgtaaa----ggtgtctgctctagtgcttcgtgagttgaggga |
10388549 |
T |
|
| Q |
264 |
tgtctttttgacttgtgtc-agagtcttgtggaccgatcgtttttgattcgaggtcgggagcaagtttgtgacttaggttcttttaggctgttgtgatgt |
362 |
Q |
| |
|
||||||||||||||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||| |
|
|
| T |
10388550 |
tgtctttttgacttgcgtcgagagtcttgtgggccgatcacttttgattcgaggtcgggagcaagtttatgactcaggtccttttaggctgttgtgatgt |
10388649 |
T |
|
| Q |
363 |
ctcctccgatataccagaacttgagtggtggtcaaagctgaacatttggagcaaaat |
419 |
Q |
| |
|
|||||| |||| ||| || |||||||||||||| ||||| ||| |||| |||||||| |
|
|
| T |
10388650 |
ctcctctgatagaccggatcttgagtggtggtcgaagctaaacgtttgaagcaaaat |
10388706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 227 - 418
Target Start/End: Complemental strand, 17416638 - 17416446
Alignment:
| Q |
227 |
ttaaggtgtatgctctggtggctcgtgagttgaggggtgtctttttgacttgtgtc-agagtcttgtggaccgatcgtttttgattcgaggtcgggagca |
325 |
Q |
| |
|
||||||||| | |||| |||| ||||||||||||||||| || ||| | ||||| |||| || |||| |||||| |||||||||||| || ||||| |
|
|
| T |
17416638 |
ttaaggtgtctactctagtggttcgtgagttgaggggtgcctaaatgattggtgtcgagagcctagtgggccgatcacttttgattcgagatcaggagct |
17416539 |
T |
|
| Q |
326 |
agtttgtgacttaggttcttttaggctgttgtgatgtctcctccgatataccagaacttgagtggtggtcaaagctgaacatttggagcaaaa |
418 |
Q |
| |
|
||||| | | || || |||||||||| |||||||||||||||||| | |||||| ||||||||||||| |||||||| |||| ||||||| |
|
|
| T |
17416538 |
agttttttgcctatgtccttttaggcttttgtgatgtctcctccgacagaccagatgttgagtggtggtcgaagctgaatgtttgaagcaaaa |
17416446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 395
Target Start/End: Complemental strand, 40813910 - 40813739
Alignment:
| Q |
227 |
ttaaggtgtatgctctggtggctcgtgagttgaggggtgtctttttgacttgtgtcag-agtcttgtggaccgatcgtttttgattcgaggtcgggag-c |
324 |
Q |
| |
|
||||||||| |||||| |||| |||||| |||| ||||| |||| ||| ||| ||| | ||||| |||| |||||| |||||||||||| ||||||| | |
|
|
| T |
40813910 |
ttaaggtgtctgctctagtggttcgtgaattgaagggtgcctttatgatttgcgtcgggagtctggtgggccgatcacttttgattcgagatcgggagcc |
40813811 |
T |
|
| Q |
325 |
aagtttgtgacttaggttcttttaggc--tgttgtgatgtctcctccgatataccagaacttgagtggtggtc |
395 |
Q |
| |
|
|| ||| ||||| |||||||||||||| ||||| | ||||||||||| |||| ||| ||||||||||||| |
|
|
| T |
40813810 |
aattttttgactcaggttcttttaggctttgttg-gttgtctcctccgtcttaccggaagttgagtggtggtc |
40813739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 231 - 315
Target Start/End: Complemental strand, 37707480 - 37707395
Alignment:
| Q |
231 |
ggtgtatgctctggtggctcgtgagttgaggggtgtctttttgacttgtgtc-agagtcttgtggaccgatcgtttttgattcgag |
315 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| ||||||| |||||| |||||| |||| |||||| |||||||||||| |
|
|
| T |
37707480 |
ggtgtctgctctggtggttcgtgagttgaggggtgcctttttgctatgtgtcgggagtctggtgggccgatcacttttgattcgag |
37707395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 42218980 - 42219025
Alignment:
| Q |
232 |
gtgtatgctctggtggctcgtgagttgaggggtgtctttttgactt |
277 |
Q |
| |
|
|||| ||||||||||| |||||||||||| |||||||||| ||||| |
|
|
| T |
42218980 |
gtgtctgctctggtggttcgtgagttgagtggtgtcttttcgactt |
42219025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 496
Target Start/End: Original strand, 6760855 - 6760915
Alignment:
| Q |
437 |
ttgatcactattgacggtgttggttctttgaggagttgttgttaggggatt-agcattttg |
496 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| ||| | |||||||||| || ||||||||| |
|
|
| T |
6760855 |
ttgatcactgttggcggtgttggttctttgatgagctattgttaggggtttcagcattttg |
6760915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 484
Target Start/End: Original strand, 43809508 - 43809540
Alignment:
| Q |
452 |
ggtgttggttctttgaggagttgttgttagggg |
484 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
43809508 |
ggtgttggttcattgaggagttgttgttagggg |
43809540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 164 - 487
Target Start/End: Original strand, 38709846 - 38710165
Alignment:
| Q |
164 |
cttttctctgtctttgaattttggcatcgagttattggtgggtcgaggttttggtcaggttaattaaggtgtatgctctggtggctcgtgagttgagggg |
263 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||| ||||| || |||||||| ||||||||||||||| |
|
|
| T |
38709846 |
cttttctctgtctttgaattttggcatcgggttattggtgggtcgagtttttggacaggttaa----ggtgtttgttctggtggttcgtgagttgagggg |
38709941 |
T |
|
| Q |
264 |
tgtctttttgacttgtgtcag-agtcttgtggaccgatcgtttttgattcgaggtcgggagcaagtttgtgacttaggttcttttaggctgttgtgatgt |
362 |
Q |
| |
|
|| ||||||| ||||| || | |||||| ||| | ||||| ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| |
|
|
| T |
38709942 |
tgcctttttgccttgtttcgggagtctt-tgggctgatcgcttttgattcgaggtcgggagcaagtttgtgactcaggtccttttaggatgttgtgatgt |
38710040 |
T |
|
| Q |
363 |
ctcctccgatataccagaacttgagtggtggtcaaagctgaacatttggagcaaaatctttttcgagtgccattttgatcactattgacggtgttggttc |
462 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| ||||||||| ||| ||||||||| | | |||||| ||||||||| ||| |||||||||||| |
|
|
| T |
38710041 |
ctcctccgatagaccggaacttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttc |
38710140 |
T |
|
| Q |
463 |
tttgaggagttgttgttaggggatt |
487 |
Q |
| |
|
|||||||| |||| |||||||||| |
|
|
| T |
38710141 |
tttgaggaactgttattaggggatt |
38710165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 164 - 487
Target Start/End: Original strand, 4391500 - 4391821
Alignment:
| Q |
164 |
cttttctctgtctttgaattttggcatcgagttattggtgggtcgaggttttggtcaggttaattaaggtgtatgctctggtggctcgtgagttgagggg |
263 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| ||||||||| || |||||||| ||||||||||||||| |
|
|
| T |
4391500 |
cttttctctgtctttggattttggcatcgggttcttggtgggtcgaggttttggtcagg----ttaaggtgtctgttctggtggttcgtgagttgagggg |
4391595 |
T |
|
| Q |
264 |
tgtctttttgacttgtgtc-agagtcttgtggaccgatcgtttttgattcgaggtcgggagcaag-tttgtgacttaggttcttttaggctgttgtgatg |
361 |
Q |
| |
|
|| |||||| |||||||| ||||||||||| || |||| |||||||||| ||||||||||||| ||||||||| ||| |||||||||||||||||||| |
|
|
| T |
4391596 |
tgcatttttgccttgtgtcgggagtcttgtgggccaatcgcttttgattcggggtcgggagcaagttttgtgactcagg-tcttttaggctgttgtgatg |
4391694 |
T |
|
| Q |
362 |
tctcctccgatataccagaacttgagtggtggtcaaagctgaacat-ttggagcaaaatctttttcgagtgccattttgatcactattgacggtgttggt |
460 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| ||| ||| ||| ||| |||||||||||| || |||| || |||| ||| ||||||||| |
|
|
| T |
4391695 |
tctcctccgatagacaggaacttgagtggtggtcgaagttgagcatcttgaagcaaaatctttatcatgtgcttgattttccactgttggtggtgttggt |
4391794 |
T |
|
| Q |
461 |
tctttgaggagttgttgttaggggatt |
487 |
Q |
| |
|
||||||||||| | ||||||||||||| |
|
|
| T |
4391795 |
tctttgaggagcttttgttaggggatt |
4391821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 296 - 476
Target Start/End: Complemental strand, 4397529 - 4397349
Alignment:
| Q |
296 |
ccgatcgtttttgattcgaggtcgggagcaagtttgtgacttaggttcttttaggctgttgtgatgtctcctccgatataccagaacttgagtggtggtc |
395 |
Q |
| |
|
||||||| |||||||||||| ||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||| ||| || |||||||||||||| |
|
|
| T |
4397529 |
ccgatcgcttttgattcgagttcgggagtaagtttgtgactcaggtccttttaggctgttgtgatgtctcctccgatagaccggatcttgagtggtggtc |
4397430 |
T |
|
| Q |
396 |
aaagctgaacatttggagcaaaatctttttcgagtgccattttgatcactattgacggtgttggttctttgaggagttgtt |
476 |
Q |
| |
|
||||||||| |||| ||||||||| | ||| ||||| ||||||| | ||| |||||||||||||||||||||||||| |
|
|
| T |
4397429 |
gaagctgaacgtttgaagcaaaatcactatcgggtgcctaattgatcattgttggcggtgttggttctttgaggagttgtt |
4397349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 164 - 295
Target Start/End: Complemental strand, 39909009 - 39908881
Alignment:
| Q |
164 |
cttttctctgtctttgaattttggcatcgagttattggtgggtcgaggttttggtcaggttaattaaggtgtatgctctggtggctcgtgagttgagggg |
263 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||| ||||| |||||| |||||| | ||||||||||||||||| ||||||||||||||| |
|
|
| T |
39909009 |
cttttctctgtctttggattttggcatcgggttattggtggatcgagtttttggacaggttta----ggtgtatgctctggtggttcgtgagttgagggg |
39908914 |
T |
|
| Q |
264 |
tgtctttttgacttgtgtc-agagtcttgtgga |
295 |
Q |
| |
|
|| ||||||||||||||| |||||||||||| |
|
|
| T |
39908913 |
tgcttttttgacttgtgtcgtgagtcttgtgga |
39908881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 230 - 324
Target Start/End: Original strand, 38564857 - 38564951
Alignment:
| Q |
230 |
aggtgtatgctctggtggctcgtgagttgaggggtgtctttttgacttgtgtcag-agtcttgtggaccgatcgtttttgattcgaggtcgggagc |
324 |
Q |
| |
|
|||||| ||||| | ||| ||||||||||||||||| ||||| || |||||| || ||||| |||| ||||||| |||||||||||| |||||||| |
|
|
| T |
38564857 |
aggtgtttgctcagatgggtcgtgagttgaggggtgcctttt-gatttgtgttaggagtctcgtgggccgatcgcttttgattcgagatcgggagc |
38564951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 330
Target Start/End: Original strand, 13987577 - 13987677
Alignment:
| Q |
231 |
ggtgtatgctctggtggctcgtgagttgaggggtgtctttttgacttgtgtc-agagtcttgtggaccgatcgtttttgattcgaggtcgggagcaagtt |
329 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| ||| ||| ||||||| || ||| |||| || |||| ||||| |||||| |||||||| |||| |
|
|
| T |
13987577 |
ggtgtctgctctggtggttcgtgagttgaggggtgccttgatgatttgtgtcgggaatctggtgggccaatcgcttttgcttcgagatcgggagctagtt |
13987676 |
T |
|
| Q |
330 |
t |
330 |
Q |
| |
|
| |
|
|
| T |
13987677 |
t |
13987677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 4e-73; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 165 - 484
Target Start/End: Original strand, 38387812 - 38388128
Alignment:
| Q |
165 |
ttttctctgtctttgaattttggcatcgagttattggtgggtcgaggttttggtcaggttaattaaggtgtatgctctggtggctcgtgagttgaggggt |
264 |
Q |
| |
|
|||||||| |||||| |||||| |||| ||||||||||||||||| |||||| |||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
38387812 |
ttttctctatctttggattttgccatcaggttattggtgggtcgagtttttggacaggttaa----ggtgtttgctctggtggttcgtgagttgaggggt |
38387907 |
T |
|
| Q |
265 |
gtctttttgacttgtgtcag-agtcttgtggaccgatcgtttttgattcgaggtcgggagcaagtttgtgacttaggttcttttaggctgttgtgatgtc |
363 |
Q |
| |
|
| ||||||||||| |||| | |||||||||| || ||| ||||||||| ||||| ||||||||||||||||| |||| |||||||||| |||||||||| |
|
|
| T |
38387908 |
gcctttttgacttatgtcgggagtcttgtgggccaatcacttttgattcaaggtcaggagcaagtttgtgactcaggtccttttaggctattgtgatgtc |
38388007 |
T |
|
| Q |
364 |
tcctccgatataccagaacttgagtggtggtcaaagctgaacatttggagcaaaatctttttcgagtgccattttgatcactattgacggtgttggttct |
463 |
Q |
| |
|
|| || |||| || || ||||||||||||||| ||||||||| |||| ||||||||| | ||| ||||| ||||||||| |||| |||||||||||| |
|
|
| T |
38388008 |
tcatctgatagactaggacttgagtggtggtcgaagctgaacgtttgaagcaaaatcactatcgggtgcctaattgatcactgttgatggtgttggttct |
38388107 |
T |
|
| Q |
464 |
ttgaggagttgttgttagggg |
484 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
38388108 |
tcgaggagttgttgttagggg |
38388128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 167 - 487
Target Start/End: Complemental strand, 46412 - 46094
Alignment:
| Q |
167 |
ttctctgtctttgaattttggcatcgagttattggtgggtcgaggttttggtcaggttaattaaggtgtatgctctggt-ggctcgtgagttgaggggtg |
265 |
Q |
| |
|
|||| |||||||| |||||| ||||| ||||||||||||||||| |||||| |||||| || |||| ||||| ||| || ||||||||||||||||| |
|
|
| T |
46412 |
ttctttgtctttggattttgacatcgggttattggtgggtcgagtttttggacaggtttat----gtgtctgctccggtgggttcgtgagttgaggggtg |
46317 |
T |
|
| Q |
266 |
tctttttgacttgtgtc-agagtcttgtggaccgatcgtttttgattcgaggtcgggagcaagtttgtgacttaggttcttttaggctgttgtgatgtct |
364 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||| ||||||||| ||||||||||||||||| ||||| |||| |||||||| ||||||||||||| |
|
|
| T |
46316 |
cctttttgacttgtgtcgggagtcttgtgggccaatcgcttttgattccaggtcgggagcaagtttctgactcaggtccttttaggttgttgtgatgtct |
46217 |
T |
|
| Q |
365 |
cctccgatataccagaacttgagtggtggtcaaagctgaacatttggagcaaaatctttttcgagtgccattttgatcactattgacggtgttggttctt |
464 |
Q |
| |
|
||||||||| || ||||||||||||||||||||| ||||| |||| ||||||||| | || | | | ||||||| | ||||| |||||||||||| |
|
|
| T |
46216 |
cctccgatagactggaacttgagtggtggtcaaagttgaacgtttgaagcaaaatcactatcaggcgtcgaattgatcattgttgacagtgttggttctt |
46117 |
T |
|
| Q |
465 |
tgaggagttgttgttaggggatt |
487 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
46116 |
tgaggagttgttgttaggggatt |
46094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 167 - 403
Target Start/End: Original strand, 1579034 - 1579268
Alignment:
| Q |
167 |
ttctctgtctttgaattttggcatcgagttattggtgggtcgaggttttggtcaggttaattaaggtgtatgctctggtggctcgtgagttgaggggtgt |
266 |
Q |
| |
|
||||||||||||| |||||||||||| ||| |||| ||||| ||||||||| ||||| | ||||| ||||||||||| |||||||||||||| || |
|
|
| T |
1579034 |
ttctctgtctttggattttggcatcgtgttcttggcgggtcaaggttttggataggttta----ggtgtctgctctggtggttcgtgagttgagggatgc |
1579129 |
T |
|
| Q |
267 |
ctttttgacttgtgtcag-agtcttgtggaccgatcgtttttgattcgaggtcgggagcaagt-ttgtgacttaggttcttttaggctgttgtgatgtct |
364 |
Q |
| |
|
|| ||| |||||||| | |||||||||| |||||| ||||||||| | ||||||||||||| |||||||| |||| ||| |||| ||||||||||||| |
|
|
| T |
1579130 |
ctcttttacttgtgttgggagtcttgtgggccgatcacttttgattcaaagtcgggagcaagtcttgtgactcaggtccttctaggttgttgtgatgtct |
1579229 |
T |
|
| Q |
365 |
cctccgatataccagaacttgagtggtggtcaaagctga |
403 |
Q |
| |
|
| | ||||| || |||||||||||||||| ||||||| |
|
|
| T |
1579230 |
cttgcgataggccgaaacttgagtggtggtcgaagctga |
1579268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 252 - 470
Target Start/End: Complemental strand, 4489828 - 4489610
Alignment:
| Q |
252 |
tgagttgaggggtgtctttttgacttgtgtcag-agtcttgtggaccgatcgtttttgattcgaggtcgggagcaagtttgtgacttaggttcttttagg |
350 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| | ||||| |||| | ||||||||| |||| ||||||| || ||||||| ||| | | |||||||| |
|
|
| T |
4489828 |
tgagttgaggagtgtcttaatgacttgtgtcgggagtctagtggggcaatcgttttttattcaaggtcgg-agttagtttgtaactcggatccttttagg |
4489730 |
T |
|
| Q |
351 |
ctgttgtgatgtctcctccgatataccagaacttgagtggtggtcaaagctgaacatttggagcaaaatctttttcgagtgccattttgatcactattga |
450 |
Q |
| |
|
|| |||||||||||||||||||| || |||||||||||||||| ||||| ||| |||| ||||||||| || |||||||| || | |||||||| |
|
|
| T |
4489729 |
cttttgtgatgtctcctccgatagactggaacttgagtggtggtagaagctaaacgtttgaagcaaaatcattatcgagtgcttaatttaacactattgg |
4489630 |
T |
|
| Q |
451 |
cggtgttggttctttgagga |
470 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
4489629 |
tggtgttggttctttgagga |
4489610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 227 - 330
Target Start/End: Original strand, 40531186 - 40531288
Alignment:
| Q |
227 |
ttaaggtgtatgctctggtggctcgtgagttgaggggtgtctttttgacttgtgtcagagtcttgtggaccgatcgtttttgattcgaggtcgggagcaa |
326 |
Q |
| |
|
||||||||| ||||||||||| || |||||||||||||| | |||||| |||||||| ||||| ||| |||||| |||||||||||| |||||||| | |
|
|
| T |
40531186 |
ttaaggtgtctgctctggtgggtcttgagttgaggggtgccgttttgatttgtgtca-agtctgatgggccgatcacttttgattcgagatcgggagcta |
40531284 |
T |
|
| Q |
327 |
gttt |
330 |
Q |
| |
|
|||| |
|
|
| T |
40531285 |
gttt |
40531288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 166 - 416
Target Start/End: Complemental strand, 4397616 - 4397369
Alignment:
| Q |
166 |
tttctctgtctttgaattttggcatcgagttattggtgggtcgaggttttggtcaggttaattaaggtgtatgctctggtggctcgtgagttgaggggtg |
265 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||||||| |||||| || ||| || |||| |||| |||||| ||||||||||||||||| |
|
|
| T |
4397616 |
tttctctgtctttggattttggcatagagttattggtgggtcgagtttttggacaagtttat----gtgtctgctatggtggttcgtgagttgaggggtg |
4397521 |
T |
|
| Q |
266 |
tctttttgacttgtgtcag-agtcttgtggaccgatcgtttttgattcgaggtcgggagcaagtttgtgacttaggttcttttaggctgttgtgatgtct |
364 |
Q |
| |
|
| ||||||||| | || | |||||||||| | ||||| ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||| |
|
|
| T |
4397520 |
ccattttgacttctctcgggagtcttgtgggctgatcgcttttgattcgaggtcgggagcaagtttgtgactcaggtccttttaggttgttgtgatgtct |
4397421 |
T |
|
| Q |
365 |
cctccgatataccagaacttgagtggtggtcaaagctgaacatttggagcaa |
416 |
Q |
| |
|
||||||| | ||| ||||||||||||||||| |||||| || |||| ||||| |
|
|
| T |
4397420 |
cctccgaaagaccggaacttgagtggtggtcgaagctgtacgtttgaagcaa |
4397369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 164 - 487
Target Start/End: Complemental strand, 37129111 - 37128791
Alignment:
| Q |
164 |
cttttctctgtctttgaattttggcatcgagttattggtgggtcgaggttttggtcaggttaattaaggtgtatgctctggtggctcgtgagttgagggg |
263 |
Q |
| |
|
||||| |||||||||| |||||| ||||| || ||||| ||| ||| |||||| |||||| | ||||| ||||||||||| ||||||||||| || |
|
|
| T |
37129111 |
cttttttctgtctttggattttgacatcggatttttggttggttgagtttttggacaggttca----ggtgtctgctctggtggttcgtgagttgatagg |
37129016 |
T |
|
| Q |
264 |
tgtctttttgacttgtgtcag-agtcttgtggaccgatcgtttttgattcgaggtcgggagcaagtttgtgacttaggttcttttaggctgttgtgatgt |
362 |
Q |
| |
|
|| ||||||||||||||| || |||||||||| ||||||| ||||||||||||||| ||| ||||||||||||| | || |||| ||| ||||||||||| |
|
|
| T |
37129015 |
tgcctttttgacttgtgttaggagtcttgtgggccgatcgcttttgattcgaggtccggaacaagtttgtgactcaagtcctttcaggatgttgtgatgt |
37128916 |
T |
|
| Q |
363 |
ctcctccgatataccagaacttgagtggtggtcaaagctgaacatttggagcaaaatctttttcgagtgccattttgatcactattgacggtgttggttc |
462 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||| |||||||||||||| |||||||| | ||| ||||| || |||| | ||| |||||||||||| |
|
|
| T |
37128915 |
ctcctccgatagaccgaaacttgaatggtggtcgaagctgaacatttgatgcaaaatcactatcgggtgcctaattcatcattgttggcggtgttggttc |
37128816 |
T |
|
| Q |
463 |
tttgaggagttgttgttaggggatt |
487 |
Q |
| |
|
||||||||| |||| |||||||||| |
|
|
| T |
37128815 |
tttgaggagctgtttttaggggatt |
37128791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 227 - 487
Target Start/End: Original strand, 41958185 - 41958445
Alignment:
| Q |
227 |
ttaaggtgtatgctctggtggctcgtgagttgaggggtgtctttttgacttgtgtcag-agtcttgtggaccgatcgtttttgattcgaggtcgggagca |
325 |
Q |
| |
|
||||||||| ||||||||||| | ||||||||| ||||| |||||||||||||||||| |||||||||| |||| | ||||||||||||||||| |||| |
|
|
| T |
41958185 |
ttaaggtgtctgctctggtggtttgtgagttgaagggtgcctttttgacttgtgtcaggagtcttgtgg-ccgaccacttttgattcgaggtcggaagca |
41958283 |
T |
|
| Q |
326 |
agtttgtgacttaggttcttttaggctgttgtgatgtctcctccgatataccagaacttgagtggtggtcaaagctgaacatttggagcaaaatcttttt |
425 |
Q |
| |
|
||||||||||| |||| ||||||| ||||||| | |||||||| |||| ||| |||||||||||||||| |||||||||||||| | ||||||| | | |
|
|
| T |
41958284 |
agtttgtgactcaggtccttttagtctgttgtaacgtctcctctgatagaccgaaacttgagtggtggtcgaagctgaacatttgaaacaaaatcactat |
41958383 |
T |
|
| Q |
426 |
cgagtgccattttgatcactattgacggtgttggttctttgaggagttgttgttaggggatt |
487 |
Q |
| |
|
|| | ||| || |||||| ||| || ||||||||||||||| |||||||||||||||||| |
|
|
| T |
41958384 |
cgggcgcctaattcatcactgttggcgatgttggttctttgagaagttgttgttaggggatt |
41958445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 231 - 347
Target Start/End: Complemental strand, 9560913 - 9560795
Alignment:
| Q |
231 |
ggtgtatgctctggtggctcgtgagttgaggggtgtctttttgacttgtgtc-agagtcttgtggaccgatcgtttttgattcgaggtcgggagcaag-t |
328 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||||| ||| ||| ||||||| | ||| | ||||||||||| |||||||||||| |||||||| || | |
|
|
| T |
9560913 |
ggtgtctgctctggtagttcgtgagttgaggggtgccttgatgatttgtgtcgaaagtttggtggaccgatcacttttgattcgagatcgggagctagtt |
9560814 |
T |
|
| Q |
329 |
ttgtgacttaggttctttt |
347 |
Q |
| |
|
|| ||||| |||||||||| |
|
|
| T |
9560813 |
ttttgactcaggttctttt |
9560795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 44888443 - 44888344
Alignment:
| Q |
232 |
gtgtatgctctggtggctcgtgagttgaggggtgtctttttgacttgtgtc-agagtcttgtggaccgatcgtttttgattcgaggtcgggagcaagttt |
330 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| ||| |||| || |||| |||| | |||| |||||| ||||| ||||||| | |||||| ||||| |
|
|
| T |
44888443 |
gtgtctgctctggtgggtcgtgagttgaggggtgccttattgatttatgtcgggagtttggtgggccgatcattttttattcgagattgggagctagttt |
44888344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 5e-51; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 229 - 482
Target Start/End: Original strand, 6003328 - 6003582
Alignment:
| Q |
229 |
aaggtgtatgctctggtggctcgtgagttgaggggtgtctttttgacttgtgtcag-agtcttgtggaccgatcgtttttgattcgaggtcgggagcaag |
327 |
Q |
| |
|
||||||| ||||| ||||| | |||| ||||| | || |||||||| ||||||||| |||||| ||| ||||||| ||||||||||||||||| ||||| |
|
|
| T |
6003328 |
aaggtgtctgctccggtggtttgtgaattgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcggaagcaaa |
6003427 |
T |
|
| Q |
328 |
tttgtgacttaggttcttttaggctgttgtgatgtctcctccgatataccagaacttgagtggtggtcaaagctgaacatttggagcaaaatctttttcg |
427 |
Q |
| |
|
|||||| || |||| ||||||||||||||||||||| ||||||||| || |||||||||||||||| ||||||||| |||| ||||| ||| | || |
|
|
| T |
6003428 |
tttgtgtctcaggtccttttaggctgttgtgatgtcgcctccgatagactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatcaatatca |
6003527 |
T |
|
| Q |
428 |
agtgccattttgatcactattgacggtgttggttctttgaggagttgttgttagg |
482 |
Q |
| |
|
||||| |||| |||||| ||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
6003528 |
ggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgttagg |
6003582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 164 - 322
Target Start/End: Original strand, 2570053 - 2570208
Alignment:
| Q |
164 |
cttttctctgtctttgaattttggcatcgagttattggtgggtcgaggttttggtcaggttaattaaggtgtatgctctggtggctcgtgagttgagggg |
263 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
2570053 |
cttttctctgtctttggattttggcatcgggttattggtgggtcgaggttttggtcag----attaaggtgtttgctctggttgctcgtgagttgagggg |
2570148 |
T |
|
| Q |
264 |
tgtctttttgacttgtgtca-gagtcttgtggaccgatcgtttttgattcgaggtcggga |
322 |
Q |
| |
|
|| ||||||||||||||||| |||||| |||| | |||| ||||||||||||||||||| |
|
|
| T |
2570149 |
tgcctttttgacttgtgtcaggagtctggtgggcttatcgcttttgattcgaggtcggga |
2570208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 367 - 499
Target Start/End: Original strand, 2570409 - 2570542
Alignment:
| Q |
367 |
tccgatataccagaacttgagtggtggtcaaagctgaacatttggagcaaaatctttttcgagtgccattttgatcactattgacggtgttggttctttg |
466 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||| |||| ||||||||| ||||| ||||| ||||||||||| ||| |||||||||||||||| |
|
|
| T |
2570409 |
tccgatataccaacacttgagtggtggtcgaagctgaacctttgaagcaaaatcactttcgggtgcctttttgatcactgttggcggtgttggttctttg |
2570508 |
T |
|
| Q |
467 |
aggagttgttgttagggga-ttagcattttgggg |
499 |
Q |
| |
|
||| |||||||||||| || |||||||||||||| |
|
|
| T |
2570509 |
aggtgttgttgttaggagatttagcattttgggg |
2570542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 231 - 352
Target Start/End: Complemental strand, 27993661 - 27993538
Alignment:
| Q |
231 |
ggtgtatgctctggtggctcgtgagttgaggggtgtctttttgacttgtgtc-agagtcttgtggaccgatcgtttttgattcgaggtcgggagcaag-t |
328 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||| ||| ||||||| |||||| ||||||||||| |||||||||||| |||||||| || | |
|
|
| T |
27993661 |
ggtgtttgctctggtggttcgtgagttgaggggtgtctttatgatttgtgtcgggagtctggtggaccgatcacttttgattcgagatcgggagctagtt |
27993562 |
T |
|
| Q |
329 |
ttgtgacttaggttcttttaggct |
352 |
Q |
| |
|
|| |||| ||||||||||||||| |
|
|
| T |
27993561 |
ttctgacgcaggttcttttaggct |
27993538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 249 - 352
Target Start/End: Complemental strand, 46262226 - 46262121
Alignment:
| Q |
249 |
tcgtgagttgaggggtgtctttttgacttgtgtcag-agtcttgtggaccgatcgtttttgattcgaggtcgggagcaagttt-gtgacttaggttcttt |
346 |
Q |
| |
|
||||||||||||||||| |||||||| | |||| | ||||| |||| |||||| |||||||||||| |||||||| ||||| ||||| |||||||| |
|
|
| T |
46262226 |
tcgtgagttgaggggtgcctttttgattggtgttgggagtctggtgggccgatcacttttgattcgagatcgggagctagtttcttgactctggttcttt |
46262127 |
T |
|
| Q |
347 |
taggct |
352 |
Q |
| |
|
|||||| |
|
|
| T |
46262126 |
taggct |
46262121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 330
Target Start/End: Complemental strand, 35206822 - 35206718
Alignment:
| Q |
227 |
ttaaggtgtatgctctggtggctcgtgagttgaggggtgtctttttgacttgtg-tcagagtcttgtggaccgatcgtttttgattcgaggtcgggagca |
325 |
Q |
| |
|
||||||||| ||||||||||| || ||||||||||||| |||||| | ||||| | |||||| |||| |||||| ||||||| |||| |||||||| |
|
|
| T |
35206822 |
ttaaggtgtctgctctggtgggtcatgagttgaggggtcccttttttatttgtgttgggagtctggtgggccgatcacttttgatccgagatcgggagct |
35206723 |
T |
|
| Q |
326 |
agttt |
330 |
Q |
| |
|
||||| |
|
|
| T |
35206722 |
agttt |
35206718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 404
Target Start/End: Original strand, 25153230 - 25153352
Alignment:
| Q |
284 |
gagtcttgtggaccgatcgtttttgattcgaggtcgggagcaagtttgtg--acttaggttcttttaggctgttgtgatgtctcctccgatataccagaa |
381 |
Q |
| |
|
|||||| ||||||||||| |||||||||||| ||| ||| ||||| | |||||||||||||||| || || || |||||||||| ||| ||| ||| |
|
|
| T |
25153230 |
gagtctggtggaccgatcacttttgattcgagatcgaaagccagtttttcttacttaggttcttttagactattttggtgtctcctccaatagaccggaa |
25153329 |
T |
|
| Q |
382 |
cttgagtggtggtcaaagctgaa |
404 |
Q |
| |
|
|||| |||||||| || ||||| |
|
|
| T |
25153330 |
gttgactggtggtcgaatctgaa |
25153352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 231 - 330
Target Start/End: Complemental strand, 7546554 - 7546454
Alignment:
| Q |
231 |
ggtgtatgctctggtggctcgtgagttgaggggtgtctttttgacttgtg-tcagagtcttgtggaccgatcgtttttgattcgaggtcgggagcaagtt |
329 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| |||||| | | ||| | ||||||| ||||||||||| |||||||||||| |||| ||| |||| |
|
|
| T |
7546554 |
ggtgtctgctctggtggttcgtgagttgaggggtgccttttttattggtgttgagagtctggtggaccgatcacttttgattcgagatcggaagctagtt |
7546455 |
T |
|
| Q |
330 |
t |
330 |
Q |
| |
|
| |
|
|
| T |
7546454 |
t |
7546454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 230 - 321
Target Start/End: Original strand, 12129173 - 12129264
Alignment:
| Q |
230 |
aggtgtatgctctggtggctcgtgagttgaggggtgtctttttgacttgtgtcagagtcttgtggaccgatcgtttttgattcgaggtcggg |
321 |
Q |
| |
|
|||||| | ||||||||| ||||||||||| ||||| ||| || | |||||||||||||| ||| |||||| |||||||||||| ||||| |
|
|
| T |
12129173 |
aggtgtcttctctggtgggtcgtgagttgatgggtgccttattaatttgtgtcagagtctgatggtccgatcacttttgattcgagatcggg |
12129264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University