View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15761_low_6 (Length: 469)
Name: NF15761_low_6
Description: NF15761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15761_low_6 |
 | |
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| [»] scaffold1610 (1 HSPs) |
| | |
|
| [»] scaffold1605 (1 HSPs) |
| | |
|
| [»] scaffold0436 (2 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Original strand, 10357149 - 10357593
Alignment:
| Q |
19 |
acagcagcagggaaacccacagaacagcacccaaaacataacaaaagacagcagaaaaacctgcacagggctgctgccacctgcaacagcaaccgctcct |
118 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10357149 |
acagcagcaggaaaacccacagaacagcacccaaaacataacaaaagacagcagaaaaacctgcacagg-ctgctgccacctgcaacagcaaccgctcct |
10357247 |
T |
|
| Q |
119 |
ctcagcagcaggaaaacgcagatgctgaaggtccctgccagaaacgctgcagcacaggcacgaggcacccaacaaaaaccccagatgtcgaaaagaagcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| || |
|
|
| T |
10357248 |
ttcagcagcaggaaaacgcagatgctgaaggtccctgccagaaacgctgcagcacaggcacgaggcacccaacaaaaaccccaaatgccgaaaagaaccc |
10357347 |
T |
|
| Q |
219 |
tcccccgccccattaccttctcaaacactcctccggataccactgccattcgtacaacatacaagccgagaaatccattctacccaaaagccacctccac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
10357348 |
tcccccgccccattaccttctcaaacactcctccggataccactgccattcgtacaacatacaagccgagaaatccgttctacccaaaagccaccttcac |
10357447 |
T |
|
| Q |
319 |
gagagaacttgaatctcttcaactagatcatccactcctttaccacactcgttgaagacacgatcattccgagctttccacataacccatatagccgctt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
10357448 |
aagagaacttgaatctcttcaactagatcatccactcctttaccacactcgttgaagacacgatcattctgagctttccacataacccatatagccgctt |
10357547 |
T |
|
| Q |
419 |
gccaaatcaatctccacccttaccgaatcttcttatggtaccctcc |
464 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
10357548 |
gccaaatcaatctccaccctttccgaatcttcttatggtaacctcc |
10357593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 427
Target Start/End: Original strand, 33113321 - 33113363
Alignment:
| Q |
385 |
ttccgagctttccacataacccatatagccgcttgccaaatca |
427 |
Q |
| |
|
||||| ||||||||||||||||| || |||||||||||||||| |
|
|
| T |
33113321 |
ttccgcgctttccacataacccaaatcgccgcttgccaaatca |
33113363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 231 - 464
Target Start/End: Complemental strand, 26156974 - 26156741
Alignment:
| Q |
231 |
ttaccttctcaaacactcctccggataccactgccattcgtacaacatacaagccgagaaatccattctacccaaaagccacctccacgagagaacttga |
330 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| ||||||||||| | || |||||||| |||||| |||||| |||||||||||||||||| || | |||| |
|
|
| T |
26156974 |
ttaccttctcaagcactcctccagataccattgccattcgtaaagcaaacaagccggaaaatccgttctactcaaaagccacctccacgaaagtagttga |
26156875 |
T |
|
| Q |
331 |
atctcttcaactagatcatccactcctttaccacactcgttgaagacacgatcattccgagctttccacataacccatatagccgcttgccaaatcaatc |
430 |
Q |
| |
|
||||||||||||||||| || ||||||||||||| | |||| ||||||||||| || |||||||| |||| |||||| ||||||||||||||||||| |
|
|
| T |
26156874 |
atctcttcaactagatcgtcaactcctttaccaccaccagtgaaaacacgatcatttcgtgctttccaaataatccatatcgccgcttgccaaatcaatc |
26156775 |
T |
|
| Q |
431 |
tccacccttaccgaatcttcttatggtaccctcc |
464 |
Q |
| |
|
||||||||| || || |||||||||||| ||||| |
|
|
| T |
26156774 |
tccaccctttcctaaccttcttatggtagcctcc |
26156741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 241 - 445
Target Start/End: Original strand, 19109887 - 19110091
Alignment:
| Q |
241 |
aaacactcctccggataccactgccattcgtacaacatacaagccgagaaatccattctacccaaaagccacctccacgagagaacttgaatctcttcaa |
340 |
Q |
| |
|
||||| |||||||||||||||| ||| || || |||||||| ||| | |||| |||||| ||||| |||||||||||| | |||||||||||||| | |
|
|
| T |
19109887 |
aaacattcctccggataccacttccactcataaaacatacacgcctggctatccgttctacacaaaaaccacctccacgaaatcacttgaatctcttcta |
19109986 |
T |
|
| Q |
341 |
ctagatcatccactccttt-accacactcgttgaagacacgatcattccgagctttccacataacccatatagccgcttgccaaatcaatctccaccctt |
439 |
Q |
| |
|
||||||||||| | ||| || ||| | |||||| | |||||| || | |||||||||||||||||| || |||||||||||||||| |||||| |||| |
|
|
| T |
19109987 |
atagatcatccatgcttttaacgaca-ttgttgaaaatacgatcgtttctagctttccacataacccaaattgccgcttgccaaatcattctccaacctt |
19110085 |
T |
|
| Q |
440 |
accgaa |
445 |
Q |
| |
|
||||| |
|
|
| T |
19110086 |
tccgaa |
19110091 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 65 - 168
Target Start/End: Complemental strand, 13058696 - 13058594
Alignment:
| Q |
65 |
gacagcagaaaaacctgcacagggctgctgccacctgcaacagcaaccgctcctctcagcagcaggaaaacgcagatgctgaaggtccctgccagaaacg |
164 |
Q |
| |
|
||||||||||||||| |||| |||||| |||||||||||||| ||||||| |||| ||| |||||| ||| |||||||||||||||| ||||||||||| |
|
|
| T |
13058696 |
gacagcagaaaaaccagcacggggctgttgccacctgcaacaacaaccgcgcctcacagaagcagg-taacacagatgctgaaggtccgtgccagaaacg |
13058598 |
T |
|
| Q |
165 |
ctgc |
168 |
Q |
| |
|
|||| |
|
|
| T |
13058597 |
ctgc |
13058594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1610 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold1610
Description:
Target: scaffold1610; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 220 - 439
Target Start/End: Original strand, 560 - 781
Alignment:
| Q |
220 |
cccccgccccattaccttctcaaacactcctccggataccactgccattcgtacaacatacaagccgagaaatccattctacccaaaagccacctccacg |
319 |
Q |
| |
|
|||| ||||| |||||||||||||||||| | ||| |||| ||||||||||| |||| ||| | | |||||| ||||| | ||||||||||||||| |
|
|
| T |
560 |
cccctgccccgttaccttctcaaacactctttcgggtacccttgccattcgtataacaaacacggtggaaaatccgttctattctaaagccacctccacg |
659 |
T |
|
| Q |
320 |
agagaacttgaatctcttcaactagatcatccactcctttaccacactcgttg--aagacacgatcattccgagctttccacataacccatatagccgct |
417 |
Q |
| |
|
| |||||||||||||||||||| || || ||||| ||||| | | |||| || |||| |||||| ||||| ||||| || ||| | || |||||| |
|
|
| T |
660 |
aaagaacttgaatctcttcaacaagctcttccacccctttcagtccattgttgaaaatacacaatcatttcgagcattccaaatcacctaaatcgccgct |
759 |
T |
|
| Q |
418 |
tgccaaatcaatctccaccctt |
439 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
760 |
tgccaaatcaaactccaccctt |
781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1605 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold1605
Description:
Target: scaffold1605; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 220 - 439
Target Start/End: Complemental strand, 1019 - 798
Alignment:
| Q |
220 |
cccccgccccattaccttctcaaacactcctccggataccactgccattcgtacaacatacaagccgagaaatccattctacccaaaagccacctccacg |
319 |
Q |
| |
|
|||| ||||| |||||||||||||||||| | ||| |||| ||||||||||| |||| ||| | | |||||| ||||| | ||||||||||||||| |
|
|
| T |
1019 |
cccctgccccgttaccttctcaaacactctttcgggtacccttgccattcgtataacaaacacggtggaaaatccgttctattctaaagccacctccacg |
920 |
T |
|
| Q |
320 |
agagaacttgaatctcttcaactagatcatccactcctttaccacactcgttg--aagacacgatcattccgagctttccacataacccatatagccgct |
417 |
Q |
| |
|
| |||||||||||||||||||| || || ||||| ||||| | | |||| || |||| |||||| ||||| ||||| || ||| | || |||||| |
|
|
| T |
919 |
aaagaacttgaatctcttcaacaagctcttccacccctttcagtccattgttgaaaatacacaatcatttcgagcattccaaatcacctaaatcgccgct |
820 |
T |
|
| Q |
418 |
tgccaaatcaatctccaccctt |
439 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
819 |
tgccaaatcaaactccaccctt |
798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 220 - 439
Target Start/End: Complemental strand, 20443560 - 20443339
Alignment:
| Q |
220 |
cccccgccccattaccttctcaaacactcctccggataccactgccattcgtacaacatacaagccgagaaatccattctacccaaaagccacctccacg |
319 |
Q |
| |
|
|||| ||||| |||||||||||||||||| | ||| |||| ||||||||||| |||| ||| | | |||||| ||||| | ||||||||||||||| |
|
|
| T |
20443560 |
cccctgccccgttaccttctcaaacactctttcgggtacccttgccattcgtataacaaacacggtggaaaatccgttctattctaaagccacctccacg |
20443461 |
T |
|
| Q |
320 |
agagaacttgaatctcttcaactagatcatccactcctttaccacactcgttg--aagacacgatcattccgagctttccacataacccatatagccgct |
417 |
Q |
| |
|
| |||||||||||||||||||| || || ||||| ||||| | | |||| || |||| |||||| ||||| ||||| || ||| | || |||||| |
|
|
| T |
20443460 |
aaagaacttgaatctcttcaacaagctcttccacccctttcagtccattgttgaaaatacacaatcatttcgagcattccaaatcacctaaatcgccgct |
20443361 |
T |
|
| Q |
418 |
tgccaaatcaatctccaccctt |
439 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
20443360 |
tgccaaatcaaactccaccctt |
20443339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 427
Target Start/End: Complemental strand, 38548203 - 38548161
Alignment:
| Q |
385 |
ttccgagctttccacataacccatatagccgcttgccaaatca |
427 |
Q |
| |
|
||||| ||||||||||||||||| || |||||||||||||||| |
|
|
| T |
38548203 |
ttccgcgctttccacataacccaaattgccgcttgccaaatca |
38548161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 296 - 434
Target Start/End: Complemental strand, 11821914 - 11821776
Alignment:
| Q |
296 |
ttctacccaaaagccacctccacgagagaacttgaatctcttcaactagatcatccactcctttacc-acactcgttgaagacacgatcattccgagctt |
394 |
Q |
| |
|
|||||||||||| |||||||||||| | |||||||||| ||| | |||||||||||| | |||| | ||| | |||||| | |||||| || | | ||| |
|
|
| T |
11821914 |
ttctacccaaaaaccacctccacgaaatcacttgaatctattctaatagatcatccacgcttttagcgacatt-gttgaaaatacgatcgtttctatctt |
11821816 |
T |
|
| Q |
395 |
tccacataacccatatagccgcttgccaaatcaatctcca |
434 |
Q |
| |
|
||||||||||||| || |||||||||||||||| |||||| |
|
|
| T |
11821815 |
tccacataacccaaattgccgcttgccaaatcattctcca |
11821776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 427
Target Start/End: Original strand, 55167425 - 55167467
Alignment:
| Q |
385 |
ttccgagctttccacataacccatatagccgcttgccaaatca |
427 |
Q |
| |
|
||||| ||||||||||||||||| || |||||||||||||||| |
|
|
| T |
55167425 |
ttccgcgctttccacataacccaaatcgccgcttgccaaatca |
55167467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 432
Target Start/End: Original strand, 38696485 - 38696536
Alignment:
| Q |
381 |
atcattccgagctttccacataacccatatagccgcttgccaaatcaatctc |
432 |
Q |
| |
|
|||||||| |||||||||||| ||||||| |||||||||||||||| |||| |
|
|
| T |
38696485 |
atcattcctcgctttccacatagcccatattgccgcttgccaaatcattctc |
38696536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 464
Target Start/End: Original strand, 14849095 - 14849231
Alignment:
| Q |
328 |
tgaatctcttcaactagatcatccactcctttaccacactcgttgaagacacgatcattccgagctttccacataacccatatagccgcttgccaaatca |
427 |
Q |
| |
|
|||||||||||||| | || ||||| |||||| || || ||||| | ||| ||||| || | |||||| |||||||| | || ||||||||||||| |
|
|
| T |
14849095 |
tgaatctcttcaaccaactcctccacccctttaacaacatcattgaacatacggtcattacgtgttttccaaataacccaaacggcggcttgccaaatca |
14849194 |
T |
|
| Q |
428 |
atctccacccttaccgaatcttcttatggtaccctcc |
464 |
Q |
| |
|
|||||| || ||| |||||||||||||||||||| |
|
|
| T |
14849195 |
ttctccaacccctccggatcttcttatggtaccctcc |
14849231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0436 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0436
Description:
Target: scaffold0436; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 433
Target Start/End: Original strand, 9691 - 9744
Alignment:
| Q |
380 |
gatcattccgagctttccacataacccatatagccgcttgccaaatcaatctcc |
433 |
Q |
| |
|
|||||||||| |||||||| || ||||| ||||| ||||||||||||| ||||| |
|
|
| T |
9691 |
gatcattccgcgctttccaaatcacccaaatagcagcttgccaaatcattctcc |
9744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0436; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 433
Target Start/End: Original strand, 13826 - 13879
Alignment:
| Q |
380 |
gatcattccgagctttccacataacccatatagccgcttgccaaatcaatctcc |
433 |
Q |
| |
|
|||||||||| |||||||| || ||||| ||||| ||||||||||||| ||||| |
|
|
| T |
13826 |
gatcattccgcgctttccaaatcacccaaatagcagcttgccaaatcattctcc |
13879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 455
Target Start/End: Complemental strand, 10124354 - 10124290
Alignment:
| Q |
391 |
gctttccacataacccatatagccgcttgccaaatcaatctccacccttaccgaatcttcttatg |
455 |
Q |
| |
|
|||||||||||| |||| ||| ||||||||||||||| |||| | || | ||||||||| ||||| |
|
|
| T |
10124354 |
gctttccacatagcccaaataaccgcttgccaaatcattctcaagcccttccgaatctttttatg |
10124290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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