View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15761_low_7 (Length: 458)
Name: NF15761_low_7
Description: NF15761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15761_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 31749111 - 31749567
Alignment:
| Q |
1 |
ttctgcttgaccaggatattgttccaatacactaaaaagtcccacgttatttgggaatcgagggtacaccaaaaagtctcacattgcttggaaatcgaga |
100 |
Q |
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| T |
31749111 |
ttctgcttgaccaggatattgttccaatacactaaaaagtcccacgttacttgggaatcgaggctacaccaaaaagtctcacattgcttgaaaatcgaga |
31749210 |
T |
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| Q |
101 |
ctaagagtggtttata-tcactcacactcctcaatccacttacacacaaaacccaaagtggccaatatgttgacttaattgaaaagcaccttggtaggtt |
199 |
Q |
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| T |
31749211 |
ctaagagtggtttataatcactcacactcctcaatccacttacacacaaaacccaaagtggccaatatgttgacttaattgaaaagcaccttggtaggtt |
31749310 |
T |
|
| Q |
200 |
gaggaatgaggagtgtgcgtgtttataaaccacctttagcctccattttctagcaatgcgatgctttttggtgcaccacatctctaattttgtctaattt |
299 |
Q |
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| T |
31749311 |
gaggaatgaggagtgtgcgtgtttataaaccacctttagcctccattttctagcaatgcgatgctttttggtgcaccacatctctaattttgtctaattt |
31749410 |
T |
|
| Q |
300 |
tatannnnnnnnnctctctcactctctaaattccatagttaattcaattatttctagtagtcttattataatctatacatgagtatggtgtacagtgatg |
399 |
Q |
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| T |
31749411 |
tatatatatttttctctctcactctctaaattccatagttaattcaattatttctagtagtcttattataatctatacatgagtatgatttacagtgatg |
31749510 |
T |
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| Q |
400 |
tctctatttaccctaatgtaggaggacataccttaggtttctctctctgctcctcct |
456 |
Q |
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| T |
31749511 |
gctctttttacccttatgtaggaggacataccttaggattctctcactgctcatcct |
31749567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 19339293 - 19339240
Alignment:
| Q |
63 |
ggtacaccaaaaagtctcacattgcttggaaatcgagactaagagtggtttata |
116 |
Q |
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| T |
19339293 |
ggtacatcaaaaagtctcacattgcttgataatccagactaagggtagtttata |
19339240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 38744962 - 38744926
Alignment:
| Q |
63 |
ggtacaccaaaaagtctcacattgcttggaaatcgag |
99 |
Q |
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| T |
38744962 |
ggtacaccttaaagtctcacattgcttggaaatcgag |
38744926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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