View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15762_high_2 (Length: 722)

Name: NF15762_high_2
Description: NF15762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15762_high_2
NF15762_high_2
[»] chr2 (7 HSPs)
chr2 (7-302)||(20926691-20926987)
chr2 (485-707)||(20924995-20925220)
chr2 (7-302)||(20934046-20934371)
chr2 (25-302)||(20952602-20952897)
chr2 (25-302)||(39273671-39273942)
chr2 (300-364)||(20925978-20926042)
chr2 (7-164)||(20923231-20923388)
[»] chr1 (16 HSPs)
chr1 (27-167)||(3218662-3218802)
chr1 (30-165)||(3372443-3372578)
chr1 (16-172)||(4323242-4323398)
chr1 (26-165)||(3361471-3361610)
chr1 (39-145)||(3345323-3345429)
chr1 (14-167)||(2006205-2006358)
chr1 (26-172)||(4335151-4335297)
chr1 (16-159)||(3349141-3349284)
chr1 (18-112)||(6601886-6601980)
chr1 (26-112)||(6592642-6592728)
chr1 (14-93)||(2010377-2010456)
chr1 (16-159)||(2948596-2948739)
chr1 (27-112)||(2011768-2011853)
chr1 (16-159)||(3340267-3340410)
chr1 (229-275)||(4335353-4335399)
chr1 (34-112)||(2019577-2019655)
[»] chr4 (1 HSPs)
chr4 (26-165)||(21237288-21237427)
[»] chr5 (1 HSPs)
chr5 (16-166)||(17969613-17969763)


Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 7 - 302
Target Start/End: Complemental strand, 20926987 - 20926691
Alignment:
Q  7 gcagcacagacacattgactatcaaacacaagatttggtagtgtgtaccctttgttcctccatttttt-agataaaacacttgttctcgctgcttcccta 105  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  20926987 gcagcagagacacattgactatcaaagacaagatttggtagtgtgtaccctttgttcctccatttttttagataaaacacttgttctcgctgcttcccta 20926888  T
Q  106 attggcatgtaagttagaatctgatctattacatgatcaggtaagcaactaattctatccggatccggttccacatcaatcatttttctgggagtagact 205  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20926887 attggcacgtaagttagaatctgatctattacatgatcaggtaagcaactaattctatccggatccggttccacatcaatcatttttctgggagaagact 20926788  T
Q  206 ttgtttgttttcttccctgttcaaacaaaggtacatacacgaatcagaaaacaaactaggttagtgtatacaggtatctatgtatacatacaagaat 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  20926787 ttgtttgttttcttccctgttcaaacaaaggtacatacacgaatcagaaaacaaactaggttagtgtatagaggtatctatgtgtacatacaagaat 20926691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 485 - 707
Target Start/End: Complemental strand, 20925220 - 20924995
Alignment:
Q  485 ggccagtaaaatttacagagaaaaaattttgaacacnnnnnnn---cttagtaaaatttaaaacactttatagacaagaaagtggattattacacctatc 581  Q
    ||||| ||||||||||||||||||||||||||||||          ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20925220 ggccattaaaatttacagagaaaaaattttgaacacttttttttttcttggtaaaatttgaaacactttatagacaagaaagtggattattacacctatc 20925121  T
Q  582 ctaatagttgttacaaaagataaattttgattgtattttgctccacaagatatgaataattttttgtttatatttaaatctaaacattattagagtaatc 681  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20925120 caaatagttgttacaaaagataaattttgattgtattttgctccacaagatatgaataattttttgtttatatttaaatctaaacattgttagagtaatc 20925021  T
Q  682 aaaatagtttcaactcattgatacat 707  Q
    ||||||||||||||||||||||||||    
T  20925020 aaaatagtttcaactcattgatacat 20924995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 7 - 302
Target Start/End: Complemental strand, 20934371 - 20934046
Alignment:
Q  7 gcagcacagacacattgactatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaa 106  Q
    |||||| ||| |||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20934371 gcagcagagagacattgtctatcaaacacaagatttgggagtgtgtaccatttgttcctccattttttagataaaacacttgttctcactgcttccctaa 20934272  T
Q  107 ttggcatgtaagttagaatctgatctattacatgatcaggtaagcaactaattctatccggatccgg------------ttccacatcaatcatttttct 194  Q
    |||||| |||||| |||||||| |||||||||||| | ||||||||||| |||||||| ||||||||            |||||||||||||| |||||     
T  20934271 ttggcaagtaagtcagaatctggtctattacatgacctggtaagcaacttattctatcaggatccggttccggttctggttccacatcaatcacttttcg 20934172  T
Q  195 gggagtagactttgtttgttttcttccctg------------------ttcaaacaaaggtacatacacgaatcagaaaacaaactaggttagtgtatac 276  Q
    ||||||||||||||||||||||||||||||                  ||||||||||||||  ||||| | ||||||||||||||||||||||| |||     
T  20934171 gggagtagactttgtttgttttcttccctggagatagatatattcatattcaaacaaaggtaagtacacaattcagaaaacaaactaggttagtgcatat 20934072  T
Q  277 aggtatctatgtatacatacaagaat 302  Q
    |||||||||||||| |||||||||||    
T  20934071 aggtatctatgtatgcatacaagaat 20934046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 25 - 302
Target Start/End: Complemental strand, 20952897 - 20952602
Alignment:
Q  25 ctatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgtaagttagaa 124  Q
    |||||||||||||||||||| ||||||| || |||||||||||||||| |||||||||||||||||||| |||| ||||||||| ||| |||||| ||||    
T  20952897 ctatcaaacacaagatttggaagtgtgttccatttgttcctccattttctagataaaacacttgttctcactgcatccctaatttgcaagtaagtcagaa 20952798  T
Q  125 tctgatctattacatgatcaggtaagcaactaattctatccggatccggttccacatcaatcatttttctgggagtagactttgtttgttttcttccctg 224  Q
    ||||||||||||||||| | ||||||||||| ||||||||||||||||||| | ||||||| |  |||  ||||||||| ||| |||||||| |||||||    
T  20952797 tctgatctattacatgacctggtaagcaacttattctatccggatccggttgctcatcaataaccttttggggagtagaatttttttgtttttttccctg 20952698  T
Q  225 ------------------ttcaaacaaaggtacatacacgaatcagaaaacaaactaggttagtgtatacaggtatctatgtatacatacaagaat 302  Q
                      ||||||||||||||||||| | ||||||| |||||||| |||||||||||| |||||||||||||| |||||||||||    
T  20952697 tagatagatatattcatattcaaacaaaggtacatacgcaaatcagataacaaactcggttagtgtatataggtatctatgtatgcatacaagaat 20952602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 25 - 302
Target Start/End: Complemental strand, 39273942 - 39273671
Alignment:
Q  25 ctatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgtaagttagaa 124  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||   | || ||||||||||||||| |||||||||||||||||| | |||  ||||    
T  39273942 ctatcaaacacaagatttggtagtgtgtaccatttgtacctccattggctggacaaaacacttgttctcactgcttccctaattggcaagcaagacagaa 39273843  T
Q  125 tctgatctattacatgatcaggtaagcaactaattctatccggatccggttccacatcaatcatttttctgggagtagactttgtttgttttcttccctg 224  Q
    ||||||||||||||||| | ||||||||||||||||||||| | || |      ||||||| | ||||| || |||||||||| || ||||||||||||     
T  39273842 tctgatctattacatgacccggtaagcaactaattctatccagctctg------catcaattacttttcgggtagtagactttcttcgttttcttccctt 39273749  T
Q  225 ttcaaacaaaggtacatacacgaatcagaaaacaaactaggttagtgtatacaggtatctatgtatacatacaagaat 302  Q
    |  | | | |  | || ||| |||||| ||||||||||||||||||||||| | ||||||| |||| |||||||||||    
T  39273748 tagatagatatattcaaacaggaatcaaaaaacaaactaggttagtgtatatatgtatctaagtatgcatacaagaat 39273671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 20926042 - 20925978
Alignment:
Q  300 aatgtatcaacattctagtcataaaatttgtgaaactaggcacttggttcacaagttgggatata 364  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  20926042 aatgtatcaacattctagttataaaatttgtgaaactaggcacttggttcacaagctgggatata 20925978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 20923388 - 20923231
Alignment:
Q  7 gcagcacagacacattgactatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaa 106  Q
    |||||| | ||||||||  |||| ||||||||||  ||| ||||| ||| ||| ||||||||||| ||||||||||||||||||||| |||||||| | |    
T  20923388 gcagcagatacacattgtttatcgaacacaagatccggttgtgtggaccattttttcctccatttgttagataaaacacttgttctccctgcttccttga 20923289  T
Q  107 ttggcatgtaagttagaatctgatctattacatgatcaggtaagcaactaattctatc 164  Q
    ||| || |   |  ||||  || ||||||| |||||| ||||||||||||||||||||    
T  20923288 ttgacaagcgtgaaagaaaatggtctattatatgatctggtaagcaactaattctatc 20923231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 6e-33; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 27 - 167
Target Start/End: Original strand, 3218662 - 3218802
Alignment:
Q  27 atcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgtaagttagaatc 126  Q
    ||||||||||| |||||||||||||| || ||| ||||||||||   | || |||||||||||| || |||||||||||||||||| ||| |  ||||||    
T  3218662 atcaaacacaatatttggtagtgtgtgccatttattcctccattcactggacaaaacacttgttttcactgcttccctaattggcaagtatgagagaatc 3218761  T
Q  127 tgatctattacatgatcaggtaagcaactaattctatccgg 167  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  3218762 tgatctattacatgacctggtaagcaactaattctatccgg 3218802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 30 - 165
Target Start/End: Complemental strand, 3372578 - 3372443
Alignment:
Q  30 aaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgtaagttagaatctga 129  Q
    |||||||||||||||||||||||||| ||||||||||||  |  | |||||||||||||||||| |||||||  |||||||||||   |  |||||||||    
T  3372578 aaacacaagatttggtagtgtgtaccatttgttcctccagctgctggataaaacacttgttctcactgcttctttaattggcatgagtgagagaatctga 3372479  T
Q  130 tctattacatgatcaggtaagcaactaattctatcc 165  Q
    |||||||||||| | |||||||||||||||||||||    
T  3372478 tctattacatgacctggtaagcaactaattctatcc 3372443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 16 - 172
Target Start/End: Original strand, 4323242 - 4323398
Alignment:
Q  16 acacattgactatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgt 115  Q
    |||||||| ||||||| |||||||||||| ||||| |||| ||| |||||||| ||  | || ||||||||||||||| |||| |||||||| |||| ||    
T  4323242 acacattgtctatcaagcacaagatttggaagtgtataccattttttcctccaattcctcgacaaaacacttgttctcactgcgtccctaatcggcaagt 4323341  T
Q  116 aagttagaatctgatctattacatgatcaggtaagcaactaattctatccggatccg 172  Q
    |||  | |||||||||| |||||||| | || || ||||||||||||||||| ||||    
T  4323342 aagacataatctgatctgttacatgacctggcaaccaactaattctatccggttccg 4323398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 26 - 165
Target Start/End: Complemental strand, 3361610 - 3361471
Alignment:
Q  26 tatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgtaagttagaat 125  Q
    ||||||| |||||||||||||| ||||||| |||||| ||||||||  | ||||||| |||||||||| |||||||| | ||||||| ||| |  |  ||    
T  3361610 tatcaaatacaagatttggtagcgtgtaccatttgttactccatttgctggataaaatacttgttctcactgcttccttgattggcaagtatgacaagat 3361511  T
Q  126 ctgatctattacatgatcaggtaagcaactaattctatcc 165  Q
    ||| |||||||| ||||| |||||||||||||||||||||    
T  3361510 ctggtctattacgtgatctggtaagcaactaattctatcc 3361471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 3345323 - 3345429
Alignment:
Q  39 atttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgtaagttagaatctgatctattaca 138  Q
    |||||||| |||||||  |||||| ||||||||||| |||| ||||||| ||||| |||||||||||||||||| ||||| ||||||||| |||| ||||    
T  3345323 atttggtattgtgtacaatttgtttctccattttttggatataacacttattctcactgcttccctaattggcaagtaagatagaatctggtctactaca 3345422  T
Q  139 tgatcag 145  Q
    |||||||    
T  3345423 tgatcag 3345429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 2006358 - 2006205
Alignment:
Q  14 agacacattgactatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcat 113  Q
    ||||||||||  ||||||||||||||||||||| ||||  || ||||| ||||||||| || |||||||||||||||||| | ||||||||||||||||     
T  2006358 agacacattgtttatcaaacacaagatttggtattgtggcccatttgtacctccatttgttggataaaacacttgttctcacagcttccctaattggcaa 2006259  T
Q  114 gtaagttagaatctgatctattacatgatcaggtaagcaactaattctatccgg 167  Q
    ||  |  |||||||  |||||||||| | |  ||||  ||||||||||||||||    
T  2006258 gtgtgacagaatcttgtctattacatcacctagtaaataactaattctatccgg 2006205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 26 - 172
Target Start/End: Original strand, 4335151 - 4335297
Alignment:
Q  26 tatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgtaagttagaat 125  Q
    ||||||| ||||||||||| ||||| |||| ||| |||||||| ||  | || ||||||||||||||| | || |||||||| ||||  ||||  | |||    
T  4335151 tatcaaatacaagatttggaagtgtataccattttttcctccaattcctcgacaaaacacttgttctcaccgcgtccctaatcggcaaataagacataat 4335250  T
Q  126 ctgatctattacatgatcaggtaagcaactaattctatccggatccg 172  Q
    ||| |||||||||||| | ||||| ||||||||||||||||| ||||    
T  4335251 ctggtctattacatgacctggtaaccaactaattctatccggttccg 4335297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 3349284 - 3349141
Alignment:
Q  16 acacattgactatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgt 115  Q
    |||||| |||||||||||||||||| |||||||||| ||| ||| ||||||||||   | ||||| |||||||||||  ||| |||| |||||| || ||    
T  3349284 acacatagactatcaaacacaagatctggtagtgtggaccatttcttcctccattcgctcgataacacacttgttcttactgattccttaattgtcaagt 3349185  T
Q  116 aagttagaatctgatctattacatgatcaggtaagcaactaatt 159  Q
      |  |||||||| ||||| | |||||| |||||||||||||||    
T  3349184 gtgagagaatctgctctataagatgatctggtaagcaactaatt 3349141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 6601886 - 6601980
Alignment:
Q  18 acattgactatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggca 112  Q
    |||||| |||||||||||||||||||| ||||||  || ||||| |||||||||  | ||||||| |||||||||| |||||||| |||||||||    
T  6601886 acattggctatcaaacacaagatttggaagtgtggcccatttgtacctccatttggttgataaaatacttgttctcactgcttccttaattggca 6601980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 6592642 - 6592728
Alignment:
Q  26 tatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggca 112  Q
    ||||||||||||||||||| ||||||  || ||||| |||||| ||  ||||||||| ||||||||| ||||||||| |||||||||    
T  6592642 tatcaaacacaagatttggaagtgtggtccatttgtacctccagttggtagataaaatacttgttctggctgcttccttaattggca 6592728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 2010456 - 2010377
Alignment:
Q  14 agacacattgactatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctc 93  Q
    ||||||||||  ||||||||||||||||||||| ||||  || ||||| ||||||||| ||  |||||||||||||||||    
T  2010456 agacacattgtttatcaaacacaagatttggtattgtggtccatttgtacctccatttgttgcataaaacacttgttctc 2010377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 2948596 - 2948739
Alignment:
Q  16 acacattgactatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgt 115  Q
    |||||| |||||||||||||||||| |||| ||||| ||| ||| ||||||||||   | ||||| ||||||||| |  |||||||| |||||| || ||    
T  2948596 acacatcgactatcaaacacaagatctggttgtgtggaccatttattcctccattcgctcgataacacacttgttgttactgcttccttaattgtcaagt 2948695  T
Q  116 aagttagaatctgatctattacatgatcaggtaagcaactaatt 159  Q
      |  ||||||||  |||| | |||||| |||||||||||||||    
T  2948696 gtgagagaatctgccctataagatgatctggtaagcaactaatt 2948739  T

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Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 2011853 - 2011768
Alignment:
Q  27 atcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggca 112  Q
    |||||||||||||||||||| ||||  || ||||| ||||||||| || ||||||| |||||||||| |  | |||||||||||||    
T  2011853 atcaaacacaagatttggtattgtgatccatttgtacctccatttgtttgataaaatacttgttctcacaacatccctaattggca 2011768  T

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Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 3340410 - 3340267
Alignment:
Q  16 acacattgactatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgt 115  Q
    ||||||| || |||||||||||||| |||||  ||| ||| ||| || ||||| ||  | |||||||||||||||||  |||||||| |||||| || ||    
T  3340410 acacattcacgatcaaacacaagatctggtaaagtggaccatttctttctccaattgctcgataaaacacttgttcttactgcttccttaattgacaagt 3340311  T
Q  116 aagttagaatctgatctattacatgatcaggtaagcaactaatt 159  Q
      |  |||||| | ||||| | |||||| |||||||||||||||    
T  3340310 gtgagagaatcagctctataagatgatctggtaagcaactaatt 3340267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 4335353 - 4335399
Alignment:
Q  229 aacaaaggtacatacacgaatcagaaaacaaactaggttagtgtata 275  Q
    |||||||||||||||| |||||||| ||||||||||||||| |||||    
T  4335353 aacaaaggtacatacatgaatcagacaacaaactaggttagagtata 4335399  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 2019655 - 2019577
Alignment:
Q  34 acaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggca 112  Q
    ||||||||||| | ||||  || ||||| ||||||||| || |||||||||||||||||| | || |||||||| ||||    
T  2019655 acaagatttggcattgtggcccatttgtacctccatttgttggataaaacacttgttctcacagcgtccctaataggca 2019577  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 165
Target Start/End: Complemental strand, 21237427 - 21237288
Alignment:
Q  26 tatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggca--tgtaagttaga 123  Q
    |||| |||||||||||||| |  ||||||| |||||| ||||||||  | ||||| ||||||||||||  ||||||| |||||||||  ||||||  |||    
T  21237427 tatcgaacacaagatttggcatagtgtaccatttgtttctccatttgctggataatacacttgttctcaatgcttccttaattggcaagtgtaag--aga 21237330  T
Q  124 atctgatctattacatgatcaggtaagcaactaattctatcc 165  Q
    ||||| ||| |||||| | | |||||| ||||||| ||||||    
T  21237329 atctggtctgttacattacctggtaaggaactaatcctatcc 21237288  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 17969763 - 17969613
Alignment:
Q  16 acacattgactatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgt 115  Q
    |||||||| |||||||||||||||| |||| | ||  ||| ||| ||| |||||||  | |||||||||||||||||| |||||||| | |||| ||  |    
T  17969763 acacattgtctatcaaacacaagatctggttgggtagaccatttcttcttccatttgctcgataaaacacttgttctccctgcttccttgattgtcaaat 17969664  T
Q  116 aagttagaatctgatctattacatgatcaggtaagcaactaattctatccg 166  Q
    | |  ||||| |||| |  || |||||| |||||||||||||| |||||||    
T  17969663 atgagagaatatgatgttgtagatgatcgggtaagcaactaatcctatccg 17969613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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