View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15762_low_1 (Length: 860)
Name: NF15762_low_1
Description: NF15762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15762_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-163; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 475 - 842
Target Start/End: Original strand, 40599804 - 40600174
Alignment:
| Q |
475 |
agtttgaagaaattacagggaggtaaatcaaagagaaagggtaatgattagtactgaaaatggtaaatgttgcttctaatatttgattgatattgaatat |
574 |
Q |
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| T |
40599804 |
agtttgaagaaattatagggaggtaaatcaaagagaaagggtaatgattagtactgaaaatggtaaatgttgcttctaatatttgattgatattgaatat |
40599903 |
T |
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| Q |
575 |
gaattgattaccttccnnnnnnnnntatatattgattatgaattgaatgattagttccattttagtaatgaacacaaaataaaagcacaaccagtatcaa |
674 |
Q |
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| T |
40599904 |
gaattgattaccttccgaaaaaaag-atatattgattatgaattgaatgattagttccattttagtaatgaacacaaaataaaagcacaaccagtatcaa |
40600002 |
T |
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| Q |
675 |
aacgtgaactgcattgttatttgttagac----tccttagatttaacaaacnnnnnnnnccatggctgtgtcaaaacaggtgcttctgatggtagttttt |
770 |
Q |
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| T |
40600003 |
aacgtgaactgcattgttatttgttagacagactccttagatttaacaaacaaaaaaaaccatggctgtgtcaaaacaggtgcttctgatggtagttttt |
40600102 |
T |
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| Q |
771 |
gctgttttttatacaaaagtagcaagtcaacctatgtcactaccaaactgtcaaacaaaatgtggttctgtc |
842 |
Q |
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| T |
40600103 |
gctgttttttatacaaaagtagcaagtcaacctatgtcactaccaaactgtcaaacaaaatgtggttctgtc |
40600174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 7 - 423
Target Start/End: Original strand, 40599350 - 40599751
Alignment:
| Q |
7 |
tattagttttagactcaaacaaaatattactcagaagagttttataaacaaaaaagtctcatatgtagacaaaaaaggccccaaatattaaaacttattt |
106 |
Q |
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| T |
40599350 |
tattagttttagactcaaacaaaatattactcagaagagttttataaacaaaaaagtctcatatgtagacaaaaaaggccccaaatatttaaacttattt |
40599449 |
T |
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| Q |
107 |
taggcctcacttgatattaaaatttattggattaatattatagttgtaaaaagaaaatagataaatattccaggt----atgacacacagtcaaggtaca |
202 |
Q |
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|||||||||||| ||||||||||||||||||||||| | | ||| |||||||||||| ||||||||||||||||||||| |
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| T |
40599450 |
taggcctcacttaatattaaaatttattggattaat------------------acctggattaatattccaggtatatatgacacacagtcaaggtaca |
40599531 |
T |
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| Q |
203 |
tgatatatatttattctaattaggtgtacatagttaaggttacttaaaatttgaatatttatcggatatgcataacacaaattaaggttcttattaacnn |
302 |
Q |
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| T |
40599532 |
tgatatatatttattctaattaggtgtacatagttaaggttacttaaaatttgaatatttatcggatatgcataacacaaattaaggttcttattaac-- |
40599629 |
T |
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| Q |
303 |
nnnnnnnnnattacgaatgtaggatatccctc-aaaaacgaatgtaggatatgacaaagaaatttcatgatacaaactccaaatgcttttatggcaataa |
401 |
Q |
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| T |
40599630 |
cttttttttattacgaatgtaggatatccctcaaaaaacgaatgtaggatatgacaaagaaatttcatgatgcaaactccaaatgcttttatggcaataa |
40599729 |
T |
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| Q |
402 |
tatattccaaaaagtcatagtc |
423 |
Q |
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| T |
40599730 |
tatattccaaaaagtcatagtc |
40599751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 741 - 822
Target Start/End: Original strand, 40589028 - 40589109
Alignment:
| Q |
741 |
tcaaaacaggtgcttctgatggtagtttttgctgttttttatacaaaagtagcaagtcaacctatgtcactaccaaactgtc |
822 |
Q |
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| T |
40589028 |
tcaaaacagattcttctgatgttgcttcttgttgtgctttatacaaaagtagcaactcaacctatgtcactaccaaactgtc |
40589109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 741 - 838
Target Start/End: Original strand, 40595429 - 40595526
Alignment:
| Q |
741 |
tcaaaacaggtgcttctgatggtagtttttgctgttttttatacaaaagtagcaagtcaacctatgtcactaccaaactgtcaaacaaaatgtggttc |
838 |
Q |
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| T |
40595429 |
tcaaaacagttgtttctcatggtggttgtcgctgtcttttatacaaaagcagcaactcaaccgatgtcactaccaaactgtacagcaaagtgtggttc |
40595526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 3327630 - 3327678
Alignment:
| Q |
70 |
tgtagacaaaaaaggccccaaatattaaaacttattttaggcctcactt |
118 |
Q |
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| T |
3327630 |
tgtagacaaaataggcctcatatatcaaaacttattttaggcctcactt |
3327678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 29836505 - 29836575
Alignment:
| Q |
46 |
ttttataaacaaaaaagtctcatatgtagacaaaaaaggccccaaatattaaaacttattttaggcctcact |
117 |
Q |
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| T |
29836505 |
ttttataaacaaaaa-gtcacatatgcaggtaaaaaatgctccatatattaaaacttgttttaggcctcact |
29836575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 39104119 - 39104030
Alignment:
| Q |
46 |
ttttataaacaaaaaagtctcatatgtagacaaaaaaggccccaaatattaaaacttattttaggcctcacttgatattaaaatttattg |
135 |
Q |
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| T |
39104119 |
ttttataaacaaaaatgcctcatatacagacaaaaaagaccacatatattaaaactttctttaagccccacttactattgaaaattattg |
39104030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 769 - 842
Target Start/End: Original strand, 8490434 - 8490507
Alignment:
| Q |
769 |
ttgctgttttttatacaaaagtagcaagtcaacctatgtcactaccaaactgtcaaacaaaatgtggttctgtc |
842 |
Q |
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||||||| ||||||||||||||| | |||||| ||||||||||||||||| |||||| ||||| |||||| |
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| T |
8490434 |
ttgctgtcatttatacaaaagtagggactcaaccggcgtcactaccaaactgtccaacaaagtgtggctctgtc |
8490507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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