View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15762_low_10 (Length: 327)
Name: NF15762_low_10
Description: NF15762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15762_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 319
Target Start/End: Complemental strand, 3481998 - 3481682
Alignment:
| Q |
7 |
tatgcatgcatatgctgtcttctctctgtctctct----actgtctttctcctttgtagtacttgttttgtttacactgaatgcttttgactcctaagtt |
102 |
Q |
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| T |
3481998 |
tatgcatgcatatgctgtcttctctctctctctctctctactgtctttctcctttgtagtacttgttttgtttacactgaatgcttttgactcctaagtt |
3481899 |
T |
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| Q |
103 |
gaagagattcttcagatctgcatggaaaaacttttggacattgtcagcatcaactattcagctttttgttgattcctaaatgttgaagcttttcaacaat |
202 |
Q |
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| T |
3481898 |
gaagagattcttcagatctgcatggaaaaacttttggacattgtcagcatcaactattcagctttttgttgattcctaaatgttgaagcttttcaacaat |
3481799 |
T |
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| Q |
203 |
tcactctcatgatgattcagaataacatgtaagattggtttgcttttaatgtattcatgttgtaactgtttttgaatatgtgaatgttttacatttttgg |
302 |
Q |
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| T |
3481798 |
tcactctcatgatgattcagaataacatgtaagattggtttgcttttaatgtattcatgttgtaactgtttttgaatatgtgaatgttttacatttatgg |
3481699 |
T |
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| Q |
303 |
acttgtttctgatgatg |
319 |
Q |
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| T |
3481698 |
acttgtttctgatgatg |
3481682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 27 - 162
Target Start/End: Complemental strand, 3457572 - 3457432
Alignment:
| Q |
27 |
tctctctgtctctctactgtctttctcctttgtagtacttgttttgtttaca-ctgaatgcttttgactcctaagttgaagagattcttcagatctgcat |
125 |
Q |
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| T |
3457572 |
tctctctctctctctactttctctctcctcattagtacttgtttttgtttcagctgaatgcttttgactccaaagttgaagagattccttagatctacaa |
3457473 |
T |
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| Q |
126 |
gg-aaaaacttttggaca---ttgtcagcatcaactattca |
162 |
Q |
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| T |
3457472 |
ggaaaaaacttttgtacattgttgtcatcatcaactattca |
3457432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 3457370 - 3457305
Alignment:
| Q |
192 |
ttttcaacaattcactctcatgatgattcagaataacatgtaagattggtttgcttttaatgtatt |
257 |
Q |
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||||||||||||||||||||| ||| |||| |||||||||||||| |||||| ||||||||||||| |
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| T |
3457370 |
ttttcaacaattcactctcatcatggttcacaataacatgtaagactggttttcttttaatgtatt |
3457305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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