View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15762_low_11 (Length: 304)

Name: NF15762_low_11
Description: NF15762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15762_low_11
NF15762_low_11
[»] chr4 (4 HSPs)
chr4 (1-249)||(43420121-43420369)
chr4 (1-233)||(12212722-12212950)
chr4 (8-116)||(32465028-32465136)
chr4 (248-287)||(43420400-43420439)
[»] chr7 (3 HSPs)
chr7 (1-245)||(4287385-4287633)
chr7 (6-249)||(23678190-23678433)
chr7 (21-249)||(31308771-31308999)
[»] chr3 (2 HSPs)
chr3 (1-216)||(54800598-54800814)
chr3 (26-89)||(37333511-37333574)
[»] chr6 (1 HSPs)
chr6 (1-249)||(23597512-23597759)
[»] chr5 (3 HSPs)
chr5 (1-161)||(30971736-30971896)
chr5 (1-172)||(11277100-11277271)
chr5 (1-99)||(26243673-26243771)
[»] chr8 (3 HSPs)
chr8 (1-182)||(33851930-33852109)
chr8 (113-249)||(23565472-23565609)
chr8 (1-44)||(44629513-44629556)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 43420121 - 43420369
Alignment:
Q  1 agtaaataaatacaccccttagataaagcaatagtctcataaatcttgctttagttttggattgcaattggagatgcattagtttgtcagcaaaattaga 100  Q
    |||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |    
T  43420121 agtaaataaatacacctcttagataaagcaatagtcttgtaaatcttgctttagttttggattgcaattggagatgcattagtgtgtcagcaaagttaaa 43420220  T
Q  101 aattcatttcacatattgttgaatttttggagtattcttgtgtctcattgttgttgtttatagatagctaaacaatttatgtatgcttatattcttgttt 200  Q
    || |||||| |||||||||||||||||  |||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43420221 aactcattttacatattgttgaattttgagagtttttttgtgtctcattgttgttgtttataaatagctaaacaatttatgtatgcttatattcttgttt 43420320  T
Q  201 cattcttgcacatcttctcgttggatttggtttaatagtataagtatat 249  Q
    ||||||||||||||||||  |||||| ||||||||||||||||||||||    
T  43420321 cattcttgcacatcttctgtttggatctggtttaatagtataagtatat 43420369  T

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Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 12212950 - 12212722
Alignment:
Q  1 agtaaataaatacaccccttagataaagcaatagtctcataaatcttgctttagttttggattgcaattggagatgcattagtttgtcagcaaaattaga 100  Q
    |||||||||||| ||| || |||| ||||||||||||| ||||||||||||||  ||||||||| |||| ||||||||||||||| ||||||||||||||    
T  12212950 agtaaataaatatacctct-agattaagcaatagtctcctaaatcttgctttaactttggattggaatttgagatgcattagtttctcagcaaaattaga 12212852  T
Q  101 aattcatttcacatattgttgaatttttggagtattcttgtgtctcattgttgttgtttatagatagctaaacaatttatgtatgcttatattcttgttt 200  Q
    || |||||||||||||| |||  |||| ||||  ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||   ||||||||    
T  12212851 aactcatttcacatattattgggttttgggagatttcttgtgtctcattgttgttatttatggatagctaaacaatttatgtatgctta---tcttgttt 12212755  T
Q  201 cattcttgcacatcttctcgttggatttggttt 233  Q
    |||||||||||||||| |  |||||| ||||||    
T  12212754 cattcttgcacatcttatgcttggatgtggttt 12212722  T

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Target: chr4; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 32465136 - 32465028
Alignment:
Q  8 aaatacaccccttagataaagcaatagtctcataaatcttgctttagttttggattgcaattggagatgcattagtttgtcagcaaaattagaaattcat 107  Q
    ||||||||| ||||||| ||||| ||||||| ||||||||||||||  ||||||||| |||| |||||||||||||||||||| ||||||||||| ||||    
T  32465136 aaatacacctcttagattaagcagtagtctcctaaatcttgctttacctttggattggaattagagatgcattagtttgtcagtaaaattagaaactcat 32465037  T
Q  108 ttcacatat 116  Q
    |||||||||    
T  32465036 ttcacatat 32465028  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 43420400 - 43420439
Alignment:
Q  248 ataagtaaatgtgtgaagcgactgaagttgagcctattaa 287  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  43420400 ataagtaaatctgtgaagggactgaagttgagcctattaa 43420439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 4287633 - 4287385
Alignment:
Q  1 agtaaataaatacaccccttagataaagcaatagtctcataaatcttgctttagttttggattgcaattggagatgcattagtttgtcagcaaaattaga 100  Q
    |||||||||||||||| ||||||| || |||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |    
T  4287633 agtaaataaatacacctcttagattaaacaatagtctcgtaaatcttgctttagctttggattggaattggagatgcattagtttgtcagcaaaattaaa 4287534  T
Q  101 aattcatttcacatattgttgaatttttggagtattcttgtgtctcattgttgt---tgtttatagatagctaaacaatttatgtatgcttatattcttg 197  Q
    || |||||||||||||||||| ||||| ||||| |||||||||||| |||||||   ||||||| |||||||||||||| |||||||| |||| ||||||    
T  4287533 aactcatttcacatattgttggattttgggagttttcttgtgtctcgttgttgttgttgtttatggatagctaaacaatctatgtatgtttatcttcttg 4287434  T
Q  198 tttcattcttgcacatcttctcgttggatttgg-tttaatagtataagt 245  Q
    ||||||||||||||||||| |  |||||| ||| |||||||||||||||    
T  4287433 tttcattcttgcacatcttgtgcttggatgtggttttaatagtataagt 4287385  T

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Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 23678433 - 23678190
Alignment:
Q  6 ataaatacaccccttagataaagcaatagtctcataaatcttgctttagttttggattgcaattggagatgcattagtttgtcagcaaaattagaaattc 105  Q
    |||||||||||  |||||| | |||||||| || ||||||||||||||  ||||||||| ||||| ||||||||||||||||||||||||||| ||| ||    
T  23678433 ataaatacacct-ttagattaggcaatagtatcgtaaatcttgctttaactttggattggaattgaagatgcattagtttgtcagcaaaattataaactc 23678335  T
Q  106 atttcacatattgttgaatttttggagtattcttgtgtctcattgttgttgtttatagatagctaaacaatttatgtatgcttatattcttgtttcattc 205  Q
    ||||||||||||||||  |||| ||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  23678334 atttcacatattgttgggttttgggagttttcttgtgtcttattgttgttgtttatggatagctaaacaatttatgtatgcttatcttcttgtttcattc 23678235  T
Q  206 ttgcacatcttctcgttggatttgg-tttaatagtataagtatat 249  Q
    ||||||||||| |  |||||| ||| ||||||||||||| |||||    
T  23678234 ttgcacatcttgtgtttggatgtggttttaatagtataattatat 23678190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 21 - 249
Target Start/End: Original strand, 31308771 - 31308999
Alignment:
Q  21 agataaagcaatagtctcataaatcttgctttagttttggattgcaattggagatgcattagtttgtcagcaaaattagaaattcatttcacatattgtt 120  Q
    |||| |||||||| |||| ||||| ||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||| ||  |||    
T  31308771 agattaagcaataatctcctaaatattgctttagctttggattgaaattgaagatgcattagtttgtcagcaaaattagaaactcatttcacgtacggtt 31308870  T
Q  121 gaatttttggagtattcttgtgtctcattgttgttgtttatagatagctaaacaatttatgtatgcttatattcttgtttcattcttgcacatcttctcg 220  Q
      ||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |      
T  31308871 agattttgggagttttcttgtgtttcattgttgttgtttatggatagctaaacaatttatg-atgcttatcttcttgtttcattcttgcacatcttgtga 31308969  T
Q  221 ttggatttgg-tttaatagtataagtatat 249  Q
    |||||| ||| |||||||||||||||||||    
T  31308970 ttggatgtggttttaatagtataagtatat 31308999  T

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Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 54800814 - 54800598
Alignment:
Q  1 agtaaataaatacaccccttagataaagcaatagtctcataaatcttgctttagttttggattgcaattggagatgcattagtttgtcagcaaaattaga 100  Q
    |||||||||||||||| ||||||| || ||||| |||| ||||| ||||||||| |||| |||| ||||| |||||||||||||||||||||||||||||    
T  54800814 agtaaataaatacacctcttagattaaacaataatctcctaaattttgctttagctttgaattggaattgaagatgcattagtttgtcagcaaaattaga 54800715  T
Q  101 aattcatttcacatattgttgaatttttggagtattcttgtgtctcattgttgttgtttatagatagctaaacaatttatgtatgctta-tattcttgtt 199  Q
    || |||||||||||||||||| ||||| ||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||||    
T  54800714 aactcatttcacatattgttggattttgggagttttcttgtgtctcattattgttgtttatggatagctaaacaatttatgtatgcttatttttcttgtt 54800615  T
Q  200 tcattcttgcacatctt 216  Q
    ||||||||||| |||||    
T  54800614 tcattcttgcatatctt 54800598  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 37333511 - 37333574
Alignment:
Q  26 aagcaatagtctcataaatcttgctttagttttggattgcaattggagatgcattagtttgtca 89  Q
    |||||| |||||| ||||||||||||||  ||||||||| |||||||||||||||| |||||||    
T  37333511 aagcaacagtctcctaaatcttgctttatctttggattggaattggagatgcattactttgtca 37333574  T

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Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 23597759 - 23597512
Alignment:
Q  1 agtaaataaatacaccccttagataaagcaatagtctcataaatcttgctttagttttggattgcaattggagatgcattagtttgtcagcaaaattaga 100  Q
    |||||||||||| ||| ||||||| ||||||||||||| |||||| | |||||| ||| ||||| |||||||||||||||||||||||||||||||||||    
T  23597759 agtaaataaatagaccacttagattaagcaatagtctcctaaatcattctttagctttcgattggaattggagatgcattagtttgtcagcaaaattaga 23597660  T
Q  101 aattcatttcacatattgttgaatttttggagtattcttgtgtctcattgttgttgtttatagatagctaaacaatttatgtatgcttatattcttgttt 200  Q
    || ||||||||||||||||||  ||||  |||  || |||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||    
T  23597659 aactcatttcacatattgttgggtttt--gagagtttttgtgtctcattgttgttgtttatggataactaaacaatttatgtatgcttatcttcttgttt 23597562  T
Q  201 cattcttgcacatcttctcgttggatttgg-tttaatagtataagtatat 249  Q
    |||||||||| ||||| |  |||||| ||| |||| ||||||||||||||    
T  23597561 cattcttgcagatcttgtgcttggatgtggttttattagtataagtatat 23597512  T

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Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 30971736 - 30971896
Alignment:
Q  1 agtaaataaatacaccccttagataaagcaatagtctcataaatcttgctttagttttggattgcaattggagatgcattagtttgtcagcaaaattaga 100  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||    
T  30971736 agtaaataaatacacctcttagattaagcaatagtctcataaatcttgctttagctttggattaaaattggagatgcattagtttgtcagcaaaattaga 30971835  T
Q  101 aattcatttcacatattgttgaatttttggagtattcttgtgtctcattgttgttgtttat 161  Q
    |||||||||||||||||||||  |||| ||||| |||||||||||||||||||||||||||    
T  30971836 aattcatttcacatattgttgggttttgggagttttcttgtgtctcattgttgttgtttat 30971896  T

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Target: chr5; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 11277100 - 11277271
Alignment:
Q  1 agtaaataaatacaccccttagataaagcaatagtctcataaatcttgctttagttttggattgcaattggagatgcattagtttgtcagcaaaattaga 100  Q
    |||||||||||||||| ||||||| || |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  11277100 agtaaataaatacacctcttagattaaacaatagtctcataaatcttgctttagctttggattggaattggagatgcattagtttgtcagcaaaattaga 11277199  T
Q  101 aattcatttcacatattgttgaatttttggagtattcttgtgtctcattgttgttgtttatagatagctaaa 172  Q
    |  ||||||||||||||||||  ||||||| || ||||||||||||||||||||||||||| ||||||||||    
T  11277200 agctcatttcacatattgttgggtttttggggttttcttgtgtctcattgttgttgtttatggatagctaaa 11277271  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 26243673 - 26243771
Alignment:
Q  1 agtaaataaatacaccccttagataaagcaatagtctcataaatcttgctttagttttggattgcaattggagatgcattagtttgtcagcaaaattag 99  Q
    ||||||||||||| || ||||||| |||||| | |||| ||||||||||| ||  ||||||||| |||||||||||||||||||||  | |||||||||    
T  26243673 agtaaataaatacgcctcttagattaagcaacaatctcctaaatcttgctatatctttggattggaattggagatgcattagtttgagaacaaaattag 26243771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 33851930 - 33852109
Alignment:
Q  1 agtaaataaatacaccccttagataaagcaatagtctcataaatcttgctttagttttggattgcaattggagatgcattagtttgtcagcaaaattaga 100  Q
    |||||||||||||||| ||||||| ||||||||||||  ||||||||||||||  ||||||||| |||||||||||||||| ||||| ||||||||||||    
T  33851930 agtaaataaatacacctcttagattaagcaatagtctgctaaatcttgctttaactttggattggaattggagatgcattaatttgttagcaaaattaga 33852029  T
Q  101 aattcatttcacatattgttgaatttttggagtattcttgtgtctcattgttgttgtttatagatagctaaacaatttatgt 182  Q
    || ||||||||||||||||||  |||| ||||| |||||||||||| |||| ||||||  ||||||||||||||||||||||    
T  33852030 aactcatttcacatattgttgggttttgggagttttcttgtgtctcgttgtggttgtt--tagatagctaaacaatttatgt 33852109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 113 - 249
Target Start/End: Original strand, 23565472 - 23565609
Alignment:
Q  113 atattgttgaatttttggagtattcttgtgtctcattgttgttgtttatagatagctaaacaatttatgtatgcttatattcttgtttcattcttgcaca 212  Q
    |||||||||  |||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||     
T  23565472 atattgttgggttttgggagttttcttgtgtctcattgttgttgtttatggatagctaaacaatttatgtatgtttatcttcttgtttcattcttgcacg 23565571  T
Q  213 tcttctcgttggatttgg-tttaatagtataagtatat 249  Q
    |||| |  |||||| ||| |||||||||||||||||||    
T  23565572 tcttgtgcttggatgtggttttaatagtataagtatat 23565609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 44629513 - 44629556
Alignment:
Q  1 agtaaataaatacaccccttagataaagcaatagtctcataaat 44  Q
    |||||||||||||||| ||||||| ||||||||||||| |||||    
T  44629513 agtaaataaatacacctcttagattaagcaatagtctcctaaat 44629556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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