View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15762_low_12 (Length: 303)
Name: NF15762_low_12
Description: NF15762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15762_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 14 - 285
Target Start/End: Complemental strand, 27526243 - 27525972
Alignment:
| Q |
14 |
gaagattggacgacctgctttcgctaaagcccgagtcataacaggatacctatatataagaatgtcatggtttgagttcaactggtttgagttgaggatt |
113 |
Q |
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| T |
27526243 |
gaagattggacgacctgctttcgctaaagcccgagtcataacaggatacctatatataagaatgtcatggtttgagttcaactggtttgagttgaggatt |
27526144 |
T |
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| Q |
114 |
aaaggagttacgaaaccaaagttcaaaattacgtatgataagataaaagtccatggaattcaaaattatgcatgaagtattataacataaaaaactatac |
213 |
Q |
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| T |
27526143 |
aaaggagttacgaaaccaaagttcaaaattacgtatgataagataaaagtccatggaatttaaaattatgcatgaagtattttaacataaaaaactatac |
27526044 |
T |
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| Q |
214 |
aacactagttgtaagagaaattgcaagtatatttttgactacctaacagtggaatttgatccatcattgtta |
285 |
Q |
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| T |
27526043 |
aacactagtagtaagagaaattgcaagtatatttttgactacctaacagtggaatttgatccatcattgtta |
27525972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 27531733 - 27531672
Alignment:
| Q |
14 |
gaagattggacgacctgctttcgctaaagcccgagtcataacaggatacctatatataagaa |
75 |
Q |
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| T |
27531733 |
gaagattggacgacctgccttcattaaagcgcgagtcataacaggatacctatacataagaa |
27531672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 27531606 - 27531535
Alignment:
| Q |
212 |
acaacactagttgtaagagaaattgcaagtatatttttgactacctaacagtggaatttgatccatcattgt |
283 |
Q |
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| T |
27531606 |
acaacactagtagtatgcaaaattgcaaatatatttttgactacctcacagtgggctttgattcatcattgt |
27531535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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