View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15762_low_13 (Length: 299)
Name: NF15762_low_13
Description: NF15762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15762_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 22 - 295
Target Start/End: Complemental strand, 29269463 - 29269190
Alignment:
| Q |
22 |
cttataatcaaagggggtgcccgatgtccaacacctgtcaacacttgtccgtgtccggcaccaacacatatgactacattcaattttgtaattttcttaa |
121 |
Q |
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| T |
29269463 |
cttataatcaaagggggtgcccgatgtccaacacctgtcaacacttgtccatgtacggcaccaacacatatgactacattcaattttgtaattttcttaa |
29269364 |
T |
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| Q |
122 |
ttataactaatgtcaaagcgtcagtgtcgcgcgttagtaggtgcttcatagttgtgagaattctcgagcgatcaagtaaactatattgttccccgaggac |
221 |
Q |
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| T |
29269363 |
ttataactaatgtcaaagcgtcagtgtcgcgtgtttgtaggtgcttcatagttgtgagaattctcgagcgagcaagtaaactatattgttccccgagaac |
29269264 |
T |
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| Q |
222 |
aatttacaacatcttcataagctatccataaatagcttatgcataaacattgataatgataagtgcctatgcta |
295 |
Q |
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|||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29269263 |
aatttaaaacatgttcataagctattcataaatagcttatgcataaacattgataatgataagtgcttatgcta |
29269190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 6384387 - 6384330
Alignment:
| Q |
238 |
ataagctatccataaatagcttatgcataaacattgataatgataagtgcctatgcta |
295 |
Q |
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| T |
6384387 |
ataagctctcaaaaaatagcttatgcataaacatttacaatgataagtgtttatgcta |
6384330 |
T |
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