View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15762_low_14 (Length: 297)

Name: NF15762_low_14
Description: NF15762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15762_low_14
NF15762_low_14
[»] chr5 (3 HSPs)
chr5 (12-281)||(42639849-42640118)
chr5 (55-250)||(37999731-37999928)
chr5 (55-237)||(30908978-30909160)
[»] chr3 (2 HSPs)
chr3 (16-250)||(9102588-9102821)
chr3 (12-250)||(29447748-29447996)
[»] chr2 (3 HSPs)
chr2 (123-251)||(40730629-40730759)
chr2 (25-250)||(35673103-35673334)
chr2 (33-82)||(40446420-40446469)
[»] scaffold0758 (1 HSPs)
scaffold0758 (13-180)||(462-634)
[»] chr7 (4 HSPs)
chr7 (12-163)||(8460918-8461068)
chr7 (123-252)||(1818845-1818967)
chr7 (55-216)||(13164932-13165097)
chr7 (119-183)||(22076524-22076587)
[»] chr6 (3 HSPs)
chr6 (34-120)||(32451538-32451626)
chr6 (117-181)||(32451656-32451720)
chr6 (41-107)||(193653-193719)
[»] chr1 (1 HSPs)
chr1 (152-189)||(48298568-48298605)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 12 - 281
Target Start/End: Complemental strand, 42640118 - 42639849
Alignment:
Q  12 aaaggattagaataaaaagaaaatttaagaaataattatcttattttctccacaccaaactgatttataaagattaaatggtttgaagaatagatgaaag 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||  ||    
T  42640118 aaaggattagaataaaaagaaaatttaagaaataattatcttattttctccacaccaaattgatttataaagattaaatggtttgaataatagatgggag 42640019  T
Q  112 ccaattataaataattaaccaaagtaaaaaatgtcaaggtttttcttaaattctttacacatataataaattattgaacactaaattacaaattgagata 211  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42640018 ccaattataaataattaaccaaagtagaaaatgtcaaggtttttcttaaattctttacacatataataaattattgaacactaaattacaaattgagata 42639919  T
Q  212 attatagtaaagaacatttataaaatttggggtgttacattcatcaacaatttcttttatatatcggatt 281  Q
    ||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||| | | |||||||||    
T  42639918 attatagaaaagaacatgtataaaatttggggtgttacattcctcaacaatttcttctgtgtatcggatt 42639849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 55 - 250
Target Start/End: Complemental strand, 37999928 - 37999731
Alignment:
Q  55 ttttctccacaccaaactgatttataaagattaaatggtttgaagaatagatgaaagccaattataaataattaaccaaagtaaaaaatgtcaaggtttt 154  Q
    |||||| ||||||||| ||||||||||| || |||||||||||| ||||||||||  | |||| ||||||||||||||  | | ||||||||||| ||||    
T  37999928 ttttcttcacaccaaattgatttataaaaatgaaatggtttgaataatagatgaactcaaattctaaataattaaccacgggagaaaatgtcaagttttt 37999829  T
Q  155 tcttaaattctttacacatataataaattattgaac-actaaattacaaattgagataattatagtaaagaacatttataaaat-ttggggtgttaca 250  Q
    ||||||||| |  ||||||  |||||||| | |||| || |||| ||||||||||| ||||||   ||||||||| |||||||| ||||| |||||||    
T  37999828 tcttaaattttccacacatgaaataaattttcgaacaaccaaatgacaaattgagaaaattattcaaaagaacatgtataaaatattgggatgttaca 37999731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 55 - 237
Target Start/End: Complemental strand, 30909160 - 30908978
Alignment:
Q  55 ttttctccacaccaaactgatttataaagattaaatggtttgaagaatagatgaaagccaattataaataattaaccaaagtaaaaaatgtcaaggtttt 154  Q
    |||||| ||||||||| ||||||||||| || |||||||||||| |||||||| |  | |||| |||||||||||| |||||| ||||||||||||||||    
T  30909160 ttttcttcacaccaaattgatttataaaaatgaaatggtttgaataatagatggactcaaattctaaataattaactaaagtagaaaatgtcaaggtttt 30909061  T
Q  155 tcttaaattctttacacatataataaattattgaac-actaaattacaaattgagataattatagtaaagaacatttataaaat 237  Q
    ||||||||| |  ||| ||| |||||||| | |||| ||||||| | ||||||||| || |||   ||||||||| ||||||||    
T  30909060 tcttaaatt-tgcacatataaaataaattttcgaacaactaaatgataaattgagaaaactattcaaaagaacatatataaaat 30908978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 9102821 - 9102588
Alignment:
Q  16 gattagaataaaaagaaaatttaagaaataattatcttattttctccacaccaaactgatttataaagattaaatggtttgaagaatagatgaaagccaa 115  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| || | ||| |||||||    
T  9102821 gattagaataaaaa-aacatttaagaaataattatcttattttctccaccccaaattgatttataaagattaaatggtttgaataaaaaatggaagccaa 9102723  T
Q  116 ttataaataattaaccaaagtaaaaaatgtcaaggtttttcttaaattctttacacatataataaattattgaacactaaattacaaattgagataatta 215  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  9102722 ttataaataattaac-aaagtagaaaatgtcaaggtttttcttaaattctttacacatataataaattattgaactctaaattacaaattgagaaaatta 9102624  T
Q  216 tagtaaagaacatttataaaat-ttggggtgttaca 250  Q
    ||| ||||||||  |||||||| |||||||||||||    
T  9102623 tagaaaagaacaggtataaaatattggggtgttaca 9102588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 29447996 - 29447748
Alignment:
Q  12 aaaggattagaataaaaagaaaa--tttaagaaataattatcttat-----tttctccacaccaaactgatttataaagattaaatggtttgaagaatag 104  Q
    |||||||||||||||||| | ||  ||||||||||||||||||| |     ||| |  |||||||| ||||||||||| || || |  ||||||  ||||    
T  29447996 aaaggattagaataaaaaaataacatttaagaaataattatcttctctttttttttttacaccaaattgatttataaaaatgaagtattttgaatgatag 29447897  T
Q  105 atgaaagccaattataaataattaaccaaagtaaaaaatgtcaaggtttttcttaaattctttacacat-ataataaattattgaac-actaaattacaa 202  Q
    ||| || | |||| ||||||||||||||||||| ||||||| || |||||||||||||| ||||| ||| | |||||||| | |||| ||||||| ||||    
T  29447896 atggaatcaaattctaaataattaaccaaagtagaaaatgttaaagtttttcttaaattttttacccataaaaataaattgtcgaacaactaaataacaa 29447797  T
Q  203 attgagataattatagtaaagaacatttataaaat-ttggggtgttaca 250  Q
    ||||||| || |||   |||||| || |||||||| ||||| |||||||    
T  29447796 attgagaaaactattcaaaagaatatgtataaaatattgggatgttaca 29447748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 123 - 251
Target Start/End: Original strand, 40730629 - 40730759
Alignment:
Q  123 taattaaccaaagta-aaaaatgtcaaggtttttcttaaattctttacacatataataaattattgaacactaaattacaaattgagataattatagtaa 221  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||| |||| ||  ||    
T  40730629 taattaaccaaagtagaaaaatgtcaaggtttttcttaaattctttatgcatataataaattatttaacactaaattacaaattgagaaaattctataaa 40730728  T
Q  222 agaacatttataaaat-ttggggtgttacat 251  Q
    ||||||  |||||| | ||||||||||||||    
T  40730729 agaacaagtataaagtattggggtgttacat 40730759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 250
Target Start/End: Original strand, 35673103 - 35673334
Alignment:
Q  25 aaaaagaaaatttaagaaataattatcttattttct----ccacaccaaactgatttataaagattaaatggtttgaagaatagatgaaagccaattata 120  Q
    ||||| || |||||||||||||||||||| |||| |    |||||||||| || |||||||  || || | ||||||| | |||||| || | |||| ||    
T  35673103 aaaaataacatttaagaaataattatcttcttttttttttccacaccaaattgctttataataatgaagtagtttgaata-tagatgtaatcaaattcta 35673201  T
Q  121 aataattaaccaaagtaaaaaatgtcaaggtttttcttaaattctttacacat-ataataaattattgaac-actaaattacaaattgagataattatag 218  Q
    ||||||||||||||||| ||||||||||||||||||||||||| || || ||| | |||||||| | |||| ||||||| ||||||||||| || |||      
T  35673202 aataattaaccaaagtagaaaatgtcaaggtttttcttaaatttttcacccataaaaataaattgtcgaacaactaaataacaaattgagaaaactattc 35673301  T
Q  219 taaagaacatttataaaat-ttggggtgttaca 250  Q
     |||||| || |||||||| ||||| |||||||    
T  35673302 aaaagaatatgtataaaatattgggatgttaca 35673334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 40446469 - 40446420
Alignment:
Q  33 aatttaagaaataattatcttattttctccacaccaaactgatttataaa 82  Q
    ||||||||||||||||||| |||||| | ||||||||| ||||| |||||    
T  40446469 aatttaagaaataattatcctatttttttcacaccaaattgattaataaa 40446420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 462 - 634
Alignment:
Q  13 aaggattagaataaaaagaaa--atttaagaaataattatcttatttt---ctccacaccaaactgatttataaagattaaatggtttgaagaatagatg 107  Q
    ||||| ||||||||||| |||  || ||||||||||||||||| ||||   || ||||||||| ||||||||||| || |||||||||||| |||||||     
T  462 aaggagtagaataaaaataaattatgtaagaaataattatcttttttttttcttcacaccaaattgatttataaaaatgaaatggtttgaataatagata 561  T
Q  108 aaagccaattataaataattaaccaaagtaaaaaatgtcaaggtttttcttaaattctttacacatataataa 180  Q
     |  | |||| ||||||||||||||||||| ||||||||||||||||||||||||| |  ||||||| |||||    
T  562 gactcaaattctaaataattaaccaaagtagaaaatgtcaaggtttttcttaaattttgcacacataaaataa 634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 8461068 - 8460918
Alignment:
Q  12 aaaggattagaataaaaagaaaatttaagaaataattatcttat-tttctccacaccaaactgatttataaagattaaatggtttgaagaatagatgaaa 110  Q
    ||||||||||||||| || || |||||||||||||||||||| | ||| ||||||||||| ||||||||||| || || ||||||||| |||||||| ||    
T  8461068 aaaggattagaataacaa-aacatttaagaaataattatcttttctttttccacaccaaattgatttataaaaatgaagtggtttgaataatagatggaa 8460970  T
Q  111 gccaattataaataattaaccaaagtaaaaaatgtcaaggtttttcttaaatt 163  Q
     | |||| ||  |||| ||||||||| | ||||||||||||||||||||||||    
T  8460969 tcaaattctatctaatcaaccaaagt-agaaatgtcaaggtttttcttaaatt 8460918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 252
Target Start/End: Original strand, 1818845 - 1818967
Alignment:
Q  123 taattaaccaaagta-aaaaatgtcaaggtttttcttaaattctttacacatataataaattattgaacactaaattacaaattgagataattatagtaa 221  Q
    ||||||||||||||| |||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||| |||| ||  ||    
T  1818845 taattaaccaaagtagaaaaatgtcaaggtttttcttaaattctt---------aataaattattgaacactaaattacaaattgagaaaattctataaa 1818935  T
Q  222 agaacatttataaaat-ttggggtgttacatt 252  Q
    ||||||  |||||| | |||||||||||||||    
T  1818936 agaacaagtataaagtattggggtgttacatt 1818967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 216
Target Start/End: Original strand, 13164932 - 13165097
Alignment:
Q  55 ttttctccacaccaaactgatttataaaga---ttaaatggtttgaagaatagatgaaagccaattataaataattaaccaaagtaaaaaatgtcaaggt 151  Q
    |||||| ||||||||  ||||||||||| |   | |||||||||||| |||||||| || | |||| ||| ||| ||  ||||||| |||||||||||||    
T  13164932 ttttcttcacaccaagttgatttataaaaaaaatgaaatggtttgaataatagatggaatcaaattctaagtaaataggcaaagtagaaaatgtcaaggt 13165031  T
Q  152 ttttcttaaattctttacacatataataaattattgaac-actaaattacaaattgagataattat 216  Q
    |||||||||||| |  ||| ||| |||||||| || ||| || || | ||||||||||| ||||||    
T  13165032 ttttcttaaattttccacatataaaataaattgttcaacaaccaagtgacaaattgagaaaattat 13165097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 22076587 - 22076524
Alignment:
Q  119 taaataattaaccaaagtaaaaaatgtcaaggtttttcttaaattctttacacatataataaatt 183  Q
    ||||||||||||||| ||| ||||||||||| ||| ||||||||| || || |||| ||||||||    
T  22076587 taaataattaaccaa-gtagaaaatgtcaagttttgtcttaaatttttcacgcataaaataaatt 22076524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 32451538 - 32451626
Alignment:
Q  34 atttaagaaataattatcttattttct--ccacaccaaactgatttataaagattaaatggtttgaagaatagatgaaagccaattata 120  Q
    ||||||||||||||||||||||||| |  |||||||||| ||||||||||| || |||||||||||| |||||||| |||||| |||||    
T  32451538 atttaagaaataattatcttattttttttccacaccaaattgatttataaaaatgaaatggtttgaataatagatggaagccagttata 32451626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 32451656 - 32451720
Alignment:
Q  117 tataaataattaaccaaagtaaaaaatgtcaaggtttttcttaaattctttacacatataataaa 181  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||| ||| |||||| ||||||    
T  32451656 tatatataattaaccaaagtagaaaatgtcaaggtttttcttaaattgttttcacataaaataaa 32451720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 193719 - 193653
Alignment:
Q  41 aaataattatcttattttctccacaccaaactgatttataaagattaaatggtttgaagaatagatg 107  Q
    ||||||||||||||| || | || |||||| |||||||||||||| |||||||||||| ||||||||    
T  193719 aaataattatcttatctttttcaaaccaaattgatttataaagatgaaatggtttgaataatagatg 193653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 48298568 - 48298605
Alignment:
Q  152 ttttcttaaattctttacacatataataaattattgaa 189  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  48298568 ttttcttaaattctttacacataaaataaattgttgaa 48298605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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