View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15762_low_18 (Length: 254)
Name: NF15762_low_18
Description: NF15762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15762_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 33413039 - 33413287
Alignment:
| Q |
1 |
cgattttgagcactattaaccataattgtagtttagctttcctttttatacttttggtttagtcacaagacaaacctaaggtattcttccaacacttgat |
100 |
Q |
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| T |
33413039 |
cgattttgagcactattaaccataattgtagtttagctttcctttttttacttttggtttagtcacaagacaaacctaaggtatttttccaacacttgat |
33413138 |
T |
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| Q |
101 |
gaggatctccttctgtcttttacaagaaggatccaattcttgaatttccttcagtttttgggaagacatgcttttattatgctagaggagat----gcat |
196 |
Q |
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| T |
33413139 |
gaggatctccttctgtcttttacaagaaggatccaattcttgaatttccttcagtttttggcaagacatgcttttattatgctagaggagatatcaccat |
33413238 |
T |
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| Q |
197 |
ctccatatgaagaaaacattgttgatgaacgatatcctttcatctcact |
245 |
Q |
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| T |
33413239 |
ctccatatgaagaaaacattgttgatgaacgatatcctttcatgtcact |
33413287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 33491473 - 33491706
Alignment:
| Q |
10 |
gcactattaaccataattgtagtttagctttcctttttat--acttttggtttagtcacaagacaaacctaaggtattcttccaacacttgatgaggatc |
107 |
Q |
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| T |
33491473 |
gcactattaaccataattgtagtttagctttattttttttttacttttggtttacttacaagacaaacctaaggttttcttccaacacttgatgaggatc |
33491572 |
T |
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| Q |
108 |
tccttctgtcttttacaagaaggatccaattcttgaatttccttcag-tttttgggaagacatgcttttattatgctagaggagat----gcatctccat |
202 |
Q |
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| T |
33491573 |
ttctt-tatcttttacaagaaggatccaattcttgaatttccttcagttttttgggaagacatggttttatta--ctggaggagatatcaccatctccat |
33491669 |
T |
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| Q |
203 |
atgaagaaaacattgttgatgaacgatatcctttcat |
239 |
Q |
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| T |
33491670 |
ctgaagaaaacattgttgatgaaagatatcatttcat |
33491706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 3 - 245
Target Start/End: Original strand, 33420173 - 33420427
Alignment:
| Q |
3 |
attttgagcactattaaccataattgtagtttagctt-tcctttttatacttttggtttagtcacaagacaaacctaaggtattcttccaacacttgatg |
101 |
Q |
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| T |
33420173 |
attttgagcactattaaccataattgtaatttagcttaatttttttttacttttggttcactcatgagacaaacctaaggtattcttccaacacttgatg |
33420272 |
T |
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| Q |
102 |
aggatctccttctgtcttttacaagaaggatccaattcttgaatttccttcagtttttgggaaga----catgcttttattatgct---agaggagat-- |
192 |
Q |
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| T |
33420273 |
aggatctccttatgtcttttacttgaaggatcaaattcttgaatttccttcggtttttggggagacatgcatgcttttattttgctacaagaggagatat |
33420372 |
T |
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| Q |
193 |
--gcatctccatatgaagaaaacattgttgatgaacgatatcctttcatctcact |
245 |
Q |
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| T |
33420373 |
caccatctccatctaaagaaaacattgttgatgaaatatatcatttcatgtcact |
33420427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 28812533 - 28812407
Alignment:
| Q |
21 |
cataattgtagtttagctttccttttta-tacttttggtttagtcacaagacaaacctaaggtattcttccaacacttgatgaggatctccttctgtc-t |
118 |
Q |
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| T |
28812533 |
cataattggagtttagctttaattttttgtacttttggtttactcatacgcaaaatctaaggtattcttccaacttttgatgaggatatccttctgtctt |
28812434 |
T |
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| Q |
119 |
tttacaagaaggatccaattcttgaat |
145 |
Q |
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| T |
28812433 |
ttttcttgaaggatccaattcttgaat |
28812407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 245
Target Start/End: Complemental strand, 28812368 - 28812259
Alignment:
| Q |
143 |
aatttccttcagtttttgggaagacatgcttttattatgcta---gaggagatg----catctccatatgaagaaaacattgttgatgaacgatatcctt |
235 |
Q |
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|||||||||||||||||||||||||| |||||||| |||| | |||||||| ||||||||| ||||||||||||||| |||||| |||||| || |
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| T |
28812368 |
aatttccttcagtttttgggaagacacgcttttatcatgcaaccagaggagatatcaccatctccatctgaagaaaacattgtcgatgaaagatatcatt |
28812269 |
T |
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| Q |
236 |
tcatctcact |
245 |
Q |
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|||| ||||| |
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| T |
28812268 |
tcatgtcact |
28812259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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