View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15762_low_2 (Length: 850)
Name: NF15762_low_2
Description: NF15762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15762_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 635; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 74 - 837
Target Start/End: Original strand, 14907797 - 14908560
Alignment:
| Q |
74 |
tcatttcgttctcaccaaatcttaatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataac |
173 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||| |||||||| ||||||||||| |
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| T |
14907797 |
tcatttcgttctcacccaatctcaatctttctactcctgaaaaccaaatttacttgagttttctttgccgaaaattcgaccctaaactcgacaatataac |
14907896 |
T |
|
| Q |
174 |
aagnnnnnnncatgtcttatattcgagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtctgcaac |
273 |
Q |
| |
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||| |||||||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14907897 |
aagaaaataaaatgtcttatattcgagaattgttggatcttccaatggcttgtttctgtgcaagaaaaccacacgtagtagagtctaccatgtctgcaac |
14907996 |
T |
|
| Q |
274 |
atcctcacaaaagataggatcaaatttccactccctccaccgctacgaaccagtcataatgagcgtgaccgtgtacatgaaggctttgtttgcgaactct |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14907997 |
atcctcacaaaagataggatcaaatttccactccctccaccgctacgaaccagtcataatgagcgtgaccgtgtacatgaaggctttgtttgcgaaccct |
14908096 |
T |
|
| Q |
374 |
tttatccttatgatggtgatgttgtgttcttacaagtgcttatagaattttttgttggaatcttgaagactaacaagattgaaggtgttaggaatgggat |
473 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14908097 |
tttatccttatgatggtgatgttgtgttcttacaagtgcttatagaattttttgttggaatcttgaagactaacaagattgaaggtgttaggaatgggat |
14908196 |
T |
|
| Q |
474 |
tcatgggtttgaatcgttgcaaatgatttcacttgatcttccattgtgacctactcataacatagcataacatgggttatgcagaaattgtgtgtagtat |
573 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
14908197 |
tcatgggtttgaatcgttgcaaatgatttcagttgatcttccattgtgacctactcataacatagcataacatgggttatacagaaattgtgtgtagtct |
14908296 |
T |
|
| Q |
574 |
atttatagtgattcccttttttcgtcctcgctaagggtttgtttggaagtttgaagggtagggacaaaattgtaggaatataatataggtatgatactag |
673 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | |
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| T |
14908297 |
atttatagtggttcccttttttcgtcctcgctaagggtttgtttggaagtttgaagggtagggacaaaattataggaatataatataggtataatactgg |
14908396 |
T |
|
| Q |
674 |
cattcaaatgtcgttcactctttttattattctaatacgtataaattatgagtagtagtttttgggaaattttgattttgattaatattaaagatgtcta |
773 |
Q |
| |
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|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14908397 |
cattcaaatgtcgttcacactttttattactctaatacgtataaattatgagtagtactttttgggaaattttgattttgattaatattaaagatgtcta |
14908496 |
T |
|
| Q |
774 |
gttttaggctttctaatgtctaggatgtcttggctattgtcccctgtcttttgtatttcatctc |
837 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14908497 |
attttaggctttctaatgtctaggatgtcttggctattgtcccctgtcttttgtatttcatctc |
14908560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 51273695 - 51274064
Alignment:
| Q |
1 |
ttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttatctcaaagcgtaaacttctcatttcgttctcaccaaatcttaatc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
51273695 |
ttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttatctcaaagcgtaaacttctcatttcgttctcaccaaatctcaatc |
51273794 |
T |
|
| Q |
101 |
tttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataacaagnnnnnnncatgtcttatattcgag |
200 |
Q |
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| T |
51273795 |
tttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataacaagaaaaaaacatgtcttatattcgag |
51273894 |
T |
|
| Q |
201 |
aattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtctgcaacatcctcacaaaagataggatcaaattt |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| || |
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| T |
51273895 |
aattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaactt |
51273994 |
T |
|
| Q |
301 |
ccactccctccaccgctacgaaccagtcataatgagcgtgaccgtgtacatgaaggctttgtttgcgaac |
370 |
Q |
| |
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|||||||||||||||| ||||| |||| ||| | ||||||||||||| |||||||||||||| |||| |
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| T |
51273995 |
ccactccctccaccgccgggaaccggtcacaataaacgtgaccgtgtactagaaggctttgtttgtgaac |
51274064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 377 - 521
Target Start/End: Original strand, 51274647 - 51274791
Alignment:
| Q |
377 |
atccttatgatggtgatgttgtgttcttacaa-gtgcttatagaattttttgttggaatcttgaagactaacaagattgaaggtgttaggaatgggattc |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||| ||||||||||||| ||||||| |||||| | ||||||||| |
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| T |
51274647 |
atccttatgatggtgatgttgtgttcttacaacgtgctcatagaatttt-tgttggaaacttgaagactaacgagattgagggtgttggttatgggattc |
51274745 |
T |
|
| Q |
476 |
atgggtttgaatcgttgcaaatgatttcacttgatcttccattgtg |
521 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
51274746 |
atgggtttcaatcgttgcaaatgatttcacttgatcttccattgtg |
51274791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 48403187 - 48403146
Alignment:
| Q |
32 |
agaaaaaatggcacttcaattttatctcaaagcgtaaacttc |
73 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
48403187 |
agaaagaatggcacttcaattttatctcaaagtgtaaacttc |
48403146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 3e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 5051667 - 5051458
Alignment:
| Q |
5 |
tccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttatctcaaagcgtaaacttctcatttcgttctcaccaaatcttaatctttc |
104 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||| ||| | | ||||||| | ||||| ||||||| |
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| T |
5051667 |
tccaacaaatgaaagaagaagaaaaccagaaaag-tagcacttcaattttatctcaaagcgtaaactcctcgtatggttctcatccaatctccatctttc |
5051569 |
T |
|
| Q |
105 |
tactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataacaagnnnnnnncatgtcttatattcgagaatt |
204 |
Q |
| |
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|||||||| ||| |||||||| | | ||||||| ||| |||||||||| |||||||| |||||||||||||| ||| |||||||||||||||| |
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| T |
5051568 |
tactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccctaaactcgacaatataacaagataaaatcat-ccttatattcgagaatt |
5051470 |
T |
|
| Q |
205 |
gtcggattttca |
216 |
Q |
| |
|
|| ||||||||| |
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|
| T |
5051469 |
gttggattttca |
5051458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 377 - 517
Target Start/End: Original strand, 35922944 - 35923084
Alignment:
| Q |
377 |
atccttatgatggtgatgttgtgttcttacaa-gtgcttatagaattttttgttggaatcttgaagactaacaagattgaaggtgttaggaatgggattc |
475 |
Q |
| |
|
||||||||||||||||||||| | || |||| ||||| |||| ||||| |||||||| |||||| ||||| | || | |||||| | ||| ||||| |
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| T |
35922944 |
atccttatgatggtgatgttgggcactcacaacgtgctcataggatttt-tgttggaaatttgaaggttaacatgtttaatggtgttggttatgcgattc |
35923042 |
T |
|
| Q |
476 |
atgggtttgaatcgttgcaaatgatttcacttgatcttccat |
517 |
Q |
| |
|
| |||||| ||| ||||||||| |||||||||| |||||||| |
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| T |
35923043 |
aggggtttaaattgttgcaaataatttcacttgttcttccat |
35923084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 692 - 758
Target Start/End: Original strand, 9059178 - 9059244
Alignment:
| Q |
692 |
tctttttattattctaatacgtataaattatgagtagtagtttttgggaaattttgattttgattaa |
758 |
Q |
| |
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|||||||||| |||||| |||| |||||||||| ||||| ||| | | |||||||||||||||||| |
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| T |
9059178 |
tctttttattgttctaacacgtgtaaattatgaatagtattttatatggaattttgattttgattaa |
9059244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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