View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15762_low_3 (Length: 808)
Name: NF15762_low_3
Description: NF15762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15762_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 1e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 51013932 - 51013777
Alignment:
| Q |
15 |
ataaccactgtttaaaatcttgttcgtgatataattaatcatataaaccnnnnnnntatgacttcacaaactttggaacatacggacaagtggacttcta |
114 |
Q |
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| T |
51013932 |
ataaccactgtttaaaatcttgttcgtgatataattaatcatataaaccaaaaaaatatgacttcacaaactttggaacatacggacaaatggacttcca |
51013833 |
T |
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| Q |
115 |
tatttgagctggtttcttcaaacacaagcaatccgttgttgcaaccactgttcttgg |
171 |
Q |
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| T |
51013832 |
tatttgagctggtttcttcaaacacaagtaatccgttg-tgcaaccactgttcttgg |
51013777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 452 - 495
Target Start/End: Complemental strand, 51013503 - 51013460
Alignment:
| Q |
452 |
caagtatatgaaggggcaacataatgtgtatatgaagtgaggga |
495 |
Q |
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| T |
51013503 |
caagtatatgaaggggcaacataatgtgtatatgaagtgaggga |
51013460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 452 - 512
Target Start/End: Complemental strand, 51014994 - 51014936
Alignment:
| Q |
452 |
caagtatatgaaggggcaacataatgtgtatatgaagtgagggaggatacttttcgatcat |
512 |
Q |
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| T |
51014994 |
caagtatgtgaaggggcaacataatgtg--tatgaagtgagagaggaaacttttagatcat |
51014936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 452 - 543
Target Start/End: Complemental strand, 1041153 - 1041065
Alignment:
| Q |
452 |
caagtatatgaaggggcaacataatgtgtatatgaagtgagggaggatacttttcgatcatctggctaagtatgagagtggagaagatcaag |
543 |
Q |
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| T |
1041153 |
caagtatgtgaaggggcaacataatgtgtata--aagtgagagaggatatttttcgatcatctggctaagtttgagagtgg-gaagatcaag |
1041065 |
T |
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