View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15762_low_6 (Length: 504)
Name: NF15762_low_6
Description: NF15762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15762_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Original strand, 33413039 - 33413530
Alignment:
| Q |
1 |
cgattttgagcactattaaccataattgtagtttagctttcctttttatacttttggtttagtcacaagacaaacctaaggtattcttccaacacttgat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33413039 |
cgattttgagcactattaaccataattgtagtttagctttcctttttttacttttggtttagtcacaagacaaacctaaggtatttttccaacacttgat |
33413138 |
T |
|
| Q |
101 |
gaggatctccttctgtcttttacaagaaggatccaattcttgaatttccttcagtttttgggaagacatgcttttattatgctagaggagatg----cat |
196 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
33413139 |
gaggatctccttctgtcttttacaagaaggatccaattcttgaatttccttcagtttttggcaagacatgcttttattatgctagaggagatatcaccat |
33413238 |
T |
|
| Q |
197 |
ctccatatgaagaaaacattgttgatgaacgatatcctttcatgtcacttcttttgaatggcaagcacatttttgtatatggtcatcactacttacagca |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
33413239 |
ctccatatgaagaaaacattgttgatgaacgatatcctttcatgtcacttcttttgaatggcaagcacatttttgtatatggtca---ctacttacaaca |
33413335 |
T |
|
| Q |
297 |
ttgtacctaggaccaactactcattgaaccttggagctgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgtttttgcttctat |
396 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33413336 |
ttgtacctaagaccaactactcattgaaccttggagctgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgtttttgcttctat |
33413435 |
T |
|
| Q |
397 |
ttattttagtgtgtgatcgaactgattgtgtctaagacctatcatattcagtgccattgttcttctaattgtaaacatgatgtatgcaatggcct |
491 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33413436 |
ttattttagtgtgtgatcgaactgattgtgtctaagacctatcatattcagtgccattgttcttctaattgtaaacatgatgtatgcaatggcct |
33413530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 3 - 491
Target Start/End: Original strand, 33420173 - 33420675
Alignment:
| Q |
3 |
attttgagcactattaaccataattgtagtttagctttcctttttat-acttttggtttagtcacaagacaaacctaaggtattcttccaacacttgatg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||| | |||||||||| | ||| |||||||||||||||||||||||||||||||||| |
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| T |
33420173 |
attttgagcactattaaccataattgtaatttagcttaatttttttttacttttggttcactcatgagacaaacctaaggtattcttccaacacttgatg |
33420272 |
T |
|
| Q |
102 |
aggatctccttctgtcttttacaagaaggatccaattcttgaatttccttcagtttttgggaagacatgc----ttttattatgcta---gaggagatg- |
193 |
Q |
| |
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||||||||||| |||||||||| |||||||| |||||||||||||||||| ||||||||| |||||||| ||||||| ||||| |||||||| |
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| T |
33420273 |
aggatctccttatgtcttttacttgaaggatcaaattcttgaatttccttcggtttttggggagacatgcatgcttttattttgctacaagaggagatat |
33420372 |
T |
|
| Q |
194 |
---catctccatatgaagaaaacattgttgatgaacgatatcctttcatgtcacttcttttgaa--tggcaagcacatttttgtatatggtcatcactac |
288 |
Q |
| |
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||||||||| | |||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
33420373 |
caccatctccatctaaagaaaacattgttgatgaaatatatcatttcatgtcacttcttttgaacttggcaagcacatttttgtatatggtcg---ctac |
33420469 |
T |
|
| Q |
289 |
ttacagcattgtacctaggacc---aactactcattgaaccttggagctgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgtt |
385 |
Q |
| |
|
||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||| ||| |
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|
| T |
33420470 |
ttacatcattgtacctatgaccggaaactactcattgaaccttggagctgctgcaagtgtttgtggtgttgtcgtcggatcaatggctattgcacaagtt |
33420569 |
T |
|
| Q |
386 |
tttgcttctatttattttagtgtgtgatcgaactgattgtgtctaagacctatcatattcagtgccattgttcttctaattgtaaacatgatgtatgcaa |
485 |
Q |
| |
|
||||||||| ||||||| ||| |||| |||||| ||| ||||||||||| |||||||||||||| ||||||| ||||||||||||||| | |||||||| |
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|
| T |
33420570 |
tttgcttctgtttatttcagtatgtggtcgaaccgatcgtgtctaagacttatcatattcagtgttattgttcatctaattgtaaacatcaagtatgcaa |
33420669 |
T |
|
| Q |
486 |
tggcct |
491 |
Q |
| |
|
|||||| |
|
|
| T |
33420670 |
tggcct |
33420675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 10 - 327
Target Start/End: Original strand, 33491473 - 33491796
Alignment:
| Q |
10 |
gcactattaaccataattgtagtttagctttcctttttat--acttttggtttagtcacaagacaaacctaaggtattcttccaacacttgatgaggatc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| | |||||||||||| | |||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
33491473 |
gcactattaaccataattgtagtttagctttattttttttttacttttggtttacttacaagacaaacctaaggttttcttccaacacttgatgaggatc |
33491572 |
T |
|
| Q |
108 |
tccttctgtcttttacaagaaggatccaattcttgaatttccttcag-tttttgggaagacatgcttttattatgctagaggagat----gcatctccat |
202 |
Q |
| |
|
| ||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || |||||||| ||||||||| |
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|
| T |
33491573 |
ttctt-tatcttttacaagaaggatccaattcttgaatttccttcagttttttgggaagacatggttttatta--ctggaggagatatcaccatctccat |
33491669 |
T |
|
| Q |
203 |
atgaagaaaacattgttgatgaacgatatcctttcatgtcacttcttttgaa--tggcaagcacatttttgtatatggtcatcactacttacagcattgt |
300 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||| ||||||||||||| || ||||||||||||||||||||| |||||| ||||| |||||| |
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|
| T |
33491670 |
ctgaagaaaacattgttgatgaaagatatcatttcatgccacttcttttgaacctgacaagcacatttttgtatatgg---tcactatttacaacattgt |
33491766 |
T |
|
| Q |
301 |
acctaggac---caactactcattgaacct |
327 |
Q |
| |
|
||||||||| |||||||||||||||||| |
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|
| T |
33491767 |
acctaggaccgacaactactcattgaacct |
33491796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 143 - 491
Target Start/End: Complemental strand, 28812368 - 28812011
Alignment:
| Q |
143 |
aatttccttcagtttttgggaagacatgcttttattatgcta---gaggagatg----catctccatatgaagaaaacattgttgatgaacgatatcctt |
235 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||| | |||||||| ||||||||| ||||||||||||||| |||||| |||||| || |
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|
| T |
28812368 |
aatttccttcagtttttgggaagacacgcttttatcatgcaaccagaggagatatcaccatctccatctgaagaaaacattgtcgatgaaagatatcatt |
28812269 |
T |
|
| Q |
236 |
tcatgtcacttcttttgaa--tggcaagcacatttttgtatatggtcatcactacttacagcattgtacctaggac---caactactcattgaaccttgg |
330 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||||||| | | ||| ||||||||||||||||| |
|
|
| T |
28812268 |
tcatgtcacttcttttgaacttggcaagcacatttttgtatatggtcaa---tacttacatcgttgtacctacggctgacaattactcattgaaccttgg |
28812172 |
T |
|
| Q |
331 |
agctgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgtttttgcttctatttattttagtgtgtgatcgaactgattgtgtcta |
430 |
Q |
| |
|
|||||||||||||||||| |||||| ||| |||||||||| || ||||||| |||||||||||| ||||||| |||| ||| |||||| ||| || |||| |
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|
| T |
28812171 |
agctgctgcaagtgtttgcggtgtcgtcatcggatcaatggctgttgcacaggtttttgcttctgtttatttcagtgcgtggtcgaaccgatcgtatcta |
28812072 |
T |
|
| Q |
431 |
agacctatcatattcagtgccattgttcttctaattgtaaacatgatgtatgcaatggcct |
491 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| | |||| |||||| ||||||||| |||||| |
|
|
| T |
28812071 |
agacctctcatattcagtaccattgttcttatgattggaaacatcatgtatgcattggcct |
28812011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 28812533 - 28812407
Alignment:
| Q |
21 |
cataattgtagtttagctttccttttta-tacttttggtttagtcacaagacaaacctaaggtattcttccaacacttgatgaggatctccttctgtc-t |
118 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||||||||| ||| | | ||| |||||||||||||||||| ||||||||||| |||||||||| | |
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|
| T |
28812533 |
cataattggagtttagctttaattttttgtacttttggtttactcatacgcaaaatctaaggtattcttccaacttttgatgaggatatccttctgtctt |
28812434 |
T |
|
| Q |
119 |
tttacaagaaggatccaattcttgaat |
145 |
Q |
| |
|
||| | |||||||||||||||||||| |
|
|
| T |
28812433 |
ttttcttgaaggatccaattcttgaat |
28812407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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