View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15762_low_7 (Length: 462)

Name: NF15762_low_7
Description: NF15762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15762_low_7
NF15762_low_7
[»] chr7 (4 HSPs)
chr7 (107-428)||(3957287-3957609)
chr7 (250-288)||(36803829-36803867)
chr7 (251-292)||(32262999-32263040)
chr7 (8-44)||(3957672-3957708)
[»] chr4 (2 HSPs)
chr4 (251-292)||(53261477-53261518)
chr4 (252-292)||(48171874-48171914)
[»] chr6 (1 HSPs)
chr6 (251-279)||(14296998-14297026)
[»] chr2 (1 HSPs)
chr2 (252-288)||(7206118-7206154)
[»] chr1 (2 HSPs)
chr1 (252-288)||(7925357-7925393)
chr1 (252-288)||(13054866-13054902)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 107 - 428
Target Start/End: Complemental strand, 3957609 - 3957287
Alignment:
Q  107 gagggaatattttgggatgtattttaaatttgatctttagctatacaatatttaatcagactttttgtcaaaaataaaacttaatcagattttatttttc 206  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3957609 gagggaatactttgggatgtatttcaaatttgatctttagctatacaatatttaatcagactttttgtcaaaaataaaacttaatcagattttatttttc 3957510  T
Q  207 tcataaccaaactctctatttgccatgtcaaatccaatatgactatgtccttgtgagcttagctgagttggtagagacaatgtatataaagattaaaagg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| ||||     
T  3957509 tcataaccaaactctctatttgccatgtcaaatccaatatgactatgtctttgtgagcttagctgaattggtagagacattgtatataaagattgaaaga 3957410  T
Q  307 aagnnnnnnnnncgatacaattatatagagagattggaaaattagtcctgtcgcctatggttgatacttt-nnnnnnntatatattcatgtttacattag 405  Q
    |           |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||         ||||||||| |||||||||||    
T  3957409 agaagaaaaaaacgatacaactatatagagagattggaaaattagtcctgtcacctatggttgatactttaaaaaaaaaatatattcacgtttacattag 3957310  T
Q  406 acttatccaacgttgtgacatgt 428  Q
    |||||||||||||||||||||||    
T  3957309 acttatccaacgttgtgacatgt 3957287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 36803829 - 36803867
Alignment:
Q  250 tatgtccttgtgagcttagctgagttggtagagacaatg 288  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  36803829 tatgtcctcgtgagcttagctcagttggtagagacaatg 36803867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 32262999 - 32263040
Alignment:
Q  251 atgtccttgtgagcttagctgagttggtagagacaatgtata 292  Q
    ||||||| |||||||||||| |||||||| ||||||||||||    
T  32262999 atgtcctcgtgagcttagctcagttggtatagacaatgtata 32263040  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 3957708 - 3957672
Alignment:
Q  8 gagatgaaggagatacagttacaaaagcctatgatac 44  Q
    |||| |||||||||| |||||||||||||||||||||    
T  3957708 gagacgaaggagatatagttacaaaagcctatgatac 3957672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 53261477 - 53261518
Alignment:
Q  251 atgtccttgtgagcttagctgagttggtagagacaatgtata 292  Q
    ||||||| |||||||||||||||||||||| | |||||||||    
T  53261477 atgtcctcgtgagcttagctgagttggtaggggcaatgtata 53261518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 48171874 - 48171914
Alignment:
Q  252 tgtccttgtgagcttagctgagttggtagagacaatgtata 292  Q
    ||||||| |||||||| || |||||||||||||||||||||    
T  48171874 tgtccttatgagcttaactcagttggtagagacaatgtata 48171914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 279
Target Start/End: Complemental strand, 14297026 - 14296998
Alignment:
Q  251 atgtccttgtgagcttagctgagttggta 279  Q
    |||||||||||||||||||||||||||||    
T  14297026 atgtccttgtgagcttagctgagttggta 14296998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 7206118 - 7206154
Alignment:
Q  252 tgtccttgtgagcttagctgagttggtagagacaatg 288  Q
    |||||| |||||||||||| |||||||||||||||||    
T  7206118 tgtcctcgtgagcttagctcagttggtagagacaatg 7206154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 7925357 - 7925393
Alignment:
Q  252 tgtccttgtgagcttagctgagttggtagagacaatg 288  Q
    |||||| |||||||||||| |||||||||||||||||    
T  7925357 tgtcctcgtgagcttagctcagttggtagagacaatg 7925393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 13054866 - 13054902
Alignment:
Q  252 tgtccttgtgagcttagctgagttggtagagacaatg 288  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  13054866 tgtccttgtgagcttagcttagttggtagggacaatg 13054902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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