View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15762_low_8 (Length: 398)

Name: NF15762_low_8
Description: NF15762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15762_low_8
NF15762_low_8
[»] chr3 (31 HSPs)
chr3 (1-387)||(5298661-5299047)
chr3 (1-384)||(5250099-5250482)
chr3 (1-387)||(5267986-5268372)
chr3 (1-387)||(4388650-4389042)
chr3 (4-329)||(5280614-5280939)
chr3 (1-358)||(8568690-8569047)
chr3 (1-387)||(8589656-8590045)
chr3 (1-288)||(6882459-6882746)
chr3 (17-368)||(6838633-6838984)
chr3 (1-308)||(6265646-6265953)
chr3 (1-278)||(6142241-6142518)
chr3 (1-263)||(6168846-6169108)
chr3 (1-135)||(6259154-6259288)
chr3 (1-371)||(6735917-6736290)
chr3 (9-368)||(8471499-8471858)
chr3 (1-263)||(6245242-6245504)
chr3 (1-274)||(6900043-6900316)
chr3 (1-274)||(13270357-13270630)
chr3 (56-371)||(6554167-6554485)
chr3 (1-326)||(6591105-6591430)
chr3 (1-317)||(6721852-6722168)
chr3 (1-262)||(6917056-6917317)
chr3 (236-371)||(6947434-6947569)
chr3 (1-120)||(7587802-7587921)
chr3 (1-378)||(6448504-6448889)
chr3 (1-368)||(8454581-8454951)
chr3 (1-135)||(7749954-7750088)
chr3 (236-371)||(6479711-6479846)
chr3 (1-308)||(6519954-6520264)
chr3 (1-130)||(6947196-6947325)
chr3 (1-136)||(6479949-6480084)
[»] chr4 (1 HSPs)
chr4 (4-190)||(25242067-25242256)
[»] scaffold0425 (1 HSPs)
scaffold0425 (1-371)||(7206-7579)
[»] chr7 (1 HSPs)
chr7 (4-360)||(6573038-6573394)
[»] chr1 (1 HSPs)
chr1 (1-135)||(35140303-35140443)


Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 5298661 - 5299047
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  5298661 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgcttttacagctagaggcaaccctccacacttttctacga 5298760  T
Q  101 ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  5298761 ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcacaaacatactccaacattcactcttcttcaattg 5298860  T
Q  201 cttcaaatgaagaagtttggtggacttcatgactgatgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaagga 300  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5298861 cttcaaatgaagaagtttggtggacttcataactgatgctacctccttgtcacgtgtggtcacaataatcttacttccggtagatccattgttaaaagga 5298960  T
Q  301 agtagtaagcgctcccaacattccgcactaccgttccagacatcatccaaaacaagcagatatttctttcctgttagtctctgctgc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5298961 agtagtaagcgctcccaacattccgcactaccgttccagacatcatccaaaacaagcagatatttctttcctgttagtctctgctgc 5299047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 5250099 - 5250482
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    |||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||| ||||||| |||||| |||||||||||||||||  |||  |    
T  5250099 gtctccaatatcttaacccaatcacgttgagaaaactttcttcgcaagagatttcccaaagtttttacagctaatggcaaccctccacacttgcctataa 5250198  T
Q  101 ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattg 200  Q
    ||||||| ||||| |||||||||||||||||||||||||||||  | |||| |||||| ||||||| ||||||||||||||||||||||| || |||||     
T  5250199 ttttcttaccaatagattcaagatttggatattcacttgcattccttccgtaaaaagcatgtctcacaaacatactccaacattcactctccttcaattt 5250298  T
Q  201 cttcaaatgaagaagtttggtggacttcatgactgatgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaagga 300  Q
    ||  |||| |||    ||||||||||||||||  ||||| |||||||||| ||||||||| |||||||| |||||||| |||||||||| |   || |||    
T  5250299 ctctaaattaagctccttggtggacttcatgatagatgccacctccttgttacgtgttgtaacaataattttacttccagtagatccatggcataaggga 5250398  T
Q  301 agtagtaagcgctcccaacattccgcactaccgttccagacatcatccaaaacaagcagatatttctttcctgttagtctctgc 384  Q
    |||||||||||||||||||||||| |||| || ||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  5250399 agtagtaagcgctcccaacattccacactcccattccagacatcatccaaaacaagaagatatttcttacctgttagtctctgc 5250482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 5267986 - 5268372
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||||| ||||| |    
T  5267986 gtctccaatatcttaacccattcatgttgagagaattttcttcgcaagagatttcccaaagtttttacagctaaaggtaaccctccacacttatctacta 5268085  T
Q  101 ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattg 200  Q
    ||||||| |||||||||||||||||||| ||||||||||||||  | || |||||||| |||| || ||||||||||||||||||||||| || || ||     
T  5268086 ttttctttccaattgattcaagatttgggtattcacttgcattgcttccatgaaaagcatgtcgcacaaacatactccaacattcactctccttcagttt 5268185  T
Q  201 cttcaaatgaagaagtttggtggacttcatgactgatgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaagga 300  Q
    ||  |||| |||   ||||||||| |||||||| | |||||||| | ||| |||||||||||||||||| |||||||| | |||||||| |   || |||    
T  5268186 ctctaaattaaggtttttggtggagttcatgacagttgctaccttcatgttacgtgttgtcacaataattttacttccagcagatccatggaataaggga 5268285  T
Q  301 agtagtaagcgctcccaacattccgcactaccgttccagacatcatccaaaacaagcagatatttctttcctgttagtctctgctgc 387  Q
    |||| ||||||||||||||||||  |||| || ||||||||||||||||||| |||||  |||||||| |||||||||| |||||||    
T  5268286 agtaataagcgctcccaacattcttcactcccattccagacatcatccaaaaaaagcaagtatttcttgcctgttagtccctgctgc 5268372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 4389042 - 4388650
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||| || |||||| ||||||| ||||| |    
T  4389042 gtctccaatatcctaacccattcacgttgagagaattttcttcgcaagagatttcccaacgtttttacagctaatggaaaccctacacacttatctacaa 4388943  T
Q  101 ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattg 200  Q
    ||||||||||||||||| ||||||||||||| |||||||||||  | ||||||||||| ||||||| |||||| |||||||||||||| |  | || ||     
T  4388942 ttttcttgccaattgatacaagatttggatactcacttgcattccttccgtgaaaagcatgtctcacaaacattctccaacattcactttcattcagttt 4388843  T
Q  201 cttcaaatgaagaagtttggtggacttcatgactgatgctacctccttgtcacgtgttgtcacaataatctt------acttccggtagatccattgtta 294  Q
    ||  |||| |||    ||||||||||||||||  |||||||||||||||||||| |||||||||||||| ||      |||||| |||||||||| |       
T  4388842 ctctaaattaagctccttggtggacttcatgatagatgctacctccttgtcacgagttgtcacaataattttacttccacttccagtagatccatggcat 4388743  T
Q  295 aaaggaagtagtaagcgctcccaacattccgcactaccgttccagacatcatccaaaacaagcagatatttctttcctgttagtctctgctgc 387  Q
    |  |||||||||||||||||||||| |||| || | || |||||||||||||| |||||||||| ||||||||| || |||||| | ||||||    
T  4388742 aggggaagtagtaagcgctcccaaccttcctcattcccattccagacatcatctaaaacaagcaaatatttcttaccagttagtttgtgctgc 4388650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 4 - 329
Target Start/End: Original strand, 5280614 - 5280939
Alignment:
Q  4 tccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacgattt 103  Q
    |||||||||||   ||||||||   |||| |||||  |||||||||||||||| |||| ||| ||||||||||||  |||||||||||| | ||| ||||    
T  5280614 tccaatatcttggtccattcaccaggagaaaatttcattcgcaagagattccctaatgatttcagagctaaaggcggccctccacacttgtttacaattt 5280713  T
Q  104 tcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattgctt 203  Q
    |||| |||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||| ||| | | ||||||  || || | ||||||||||||    
T  5280714 tcttcccaattgattcaagatttggatattcacttgcattttttccgtgaaaagcatgtctcacaaataaattccaaccatcgctttcctccaattgctt 5280813  T
Q  204 caaatgaagaagtttggtggacttcatgactgatgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaaggaagt 303  Q
    ||||||||  | || || ||| ||||| |||| ||||||||| ||||||||||| ||||||||||||||||||||   ||||||||  ||||| ||||||    
T  5280814 caaatgaactatttgggaggatttcattactgctgctacctctttgtcacgtgtggtcacaataatcttacttccaaaagatccatgattaaagggaagt 5280913  T
Q  304 agtaagcgctcccaacattccgcact 329  Q
    |||||  | |||||||||||| ||||    
T  5280914 agtaactgttcccaacattccccact 5280939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 8569047 - 8568690
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    ||||||||||| |||  |||||||| |||||| ||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||| |    
T  8569047 gtctccaatatgttagaccattcaccttgagaaaattttctttgcaagagattccccaatgttttcacagctaaaggcaaccctccacacttttctacaa 8568948  T
Q  101 ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattg 200  Q
    | ||||| ||||| |||||||||||||||||||||    ||||  | || |||||||| ||| ||| ||| | ||||||||| ||  ||| |||||||||    
T  8568947 tcttctttccaatcgattcaagatttggatattcaaacacattctttccttgaaaagcatgtttcacaaataaactccaacaatctttctcctccaattg 8568848  T
Q  201 cttcaaatgaagaagtttggtggacttcatgactgatgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaagga 300  Q
    ||| ||||||||  | |     || ||||||||| |||| || | ||||||||||||||||||||||||||||||||| | ||||||||  ||||| |||    
T  8568847 ctttaaatgaagttgctgctcagatttcatgactaatgcaacatgcttgtcacgtgttgtcacaataatcttacttcctgaagatccatgattaaatgga 8568748  T
Q  301 agtagtaagcgctcccaacattccgcactaccgttccagacatcatccaaaacaagca 358  Q
    ||||||||  |||||||| ||||| || | || ||||||| |||||| | ||||||||    
T  8568747 agtagtaactgctcccaaaattcctcattcccattccagatatcatctagaacaagca 8568690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 8589656 - 8590045
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    |||||||||||||||| ||| ||| ||||||| || |||||||||||||| |  |||| || ||||| |||||||||||||||||||||||| || |  |    
T  8589656 gtctccaatatcttaatccactcatgttgagaaaaatttcttcgcaagagttggcccattgattttacagctaaaggcaaccctccacacttatccagta 8589755  T
Q  101 ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattg 200  Q
    ||||||||||| ||||||||||||||||||||||||   ||||  | || |||||||| ||| ||| ||| | ||||||||| || || || ||||||||    
T  8589756 ttttcttgccagttgattcaagatttggatattcacacacattctttccttgaaaagcatgtgtcacaaataaactccaacaatcgcttttgtccaattg 8589855  T
Q  201 cttcaaatgaagaagtttggtggacttcatgac-tg--atgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaa 297  Q
     |  |||| ||  |  |||||||| || |  || ||  ||||||||||||| |||||||||||||| | |||||||||||| | | |||||| ||||||     
T  8589856 ttgtaaatcaaataacttggtggatttaagaacatgatatgctacctccttttcacgtgttgtcacgacaatcttacttccagaaaatccatggttaaag 8589955  T
Q  298 ggaagtagtaagcgctcccaacattccgcactaccgttccagacatcatccaaaacaagcagatatttctttcctgttagtctctgctgc 387  Q
    |||||||||||  ||||||||||||| ||| | |||||||||| ||| || ||||||||||  |||||||| ||||||||| | ||||||    
T  8589956 ggaagtagtaactgctcccaacattctgcattcccgttccagatatcgtctaaaacaagcaagtatttcttgcctgttagtatgtgctgc 8590045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 6882459 - 6882746
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    |||||||||| ||||| |||||||  || |||||||||| || |||||||||||||||||||||| || |||||||||||||| |||||||||||||| |    
T  6882459 gtctccaataccttaatccattcagattcagagaatttttttagcaagagattccccaatgttttcagtgctaaaggcaaccccccacacttttctacta 6882558  T
Q  101 ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattg 200  Q
    |||||||||| ||  ||||||||||||||||||||  | ||||  | || |||||||| | ||||| ||| | ||||||| | ||||||| |||||||||    
T  6882559 ttttcttgcctatcaattcaagatttggatattcaaatacattcctaccttgaaaagcatatctcacaaataaactccaagaatcactctcctccaattg 6882658  T
Q  201 cttcaaatgaagaagtttggtggacttcatgactgatgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatcca 288  Q
    ||| || || |  ||   ||||||  |||||| ||||||||| ||||||||| ||||||||||||| ||||||||||| | |||||||    
T  6882659 ctttaagtgtattagccgggtggatctcatgattgatgctacttccttgtcatgtgttgtcacaatcatcttacttcctgaagatcca 6882746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 368
Target Start/End: Complemental strand, 6838984 - 6838633
Alignment:
Q  17 cccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacgattttcttgccaattga 116  Q
    |||||||| ||| |||||||||| | |||||||| |||||||||||||| | |||||||||||||||||||||||| ||||| || || |||||||||||    
T  6838984 cccattcatgtttagagaattttttccgcaagaggttccccaatgttttcacagctaaaggcaaccctccacacttatctacaatctttttgccaattga 6838885  T
Q  117 ttcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattgcttcaaatgaagaagt 216  Q
    |||||| ||||| ||||| ||||||||| |||||||||||||  || |   ||| | ||||||||  ||||||||||||||||| ||||||| ||  |      
T  6838884 ttcaagttttgggtattcgcttgcatttttgccgtgaaaagcaagtgtggaaaataaactccaactgtcactcttctccaattgtttcaaatcaaataac 6838785  T
Q  217 ttggtggacttcatgactgatgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaaggaagtagtaagcgctccc 316  Q
    || || || ||||  | ||||||||| |  || || |||||||||||||||||||||||    | |||||| | ||||||||||||||||||   |||||    
T  6838784 tttgtagatttcacaattgatgctacatttttatcgcgtgttgtcacaataatcttactcgtagaagatccttggttaaaaggaagtagtaacgtctccc 6838685  T
Q  317 aacattccgcactaccgttccagacatcatccaaaacaagcagatatttctt 368  Q
    ||| |||| || |    |||||||||||||||| |||||| ||||| |||||    
T  6838684 aactttcctcattcagtttccagacatcatccacaacaagtagatagttctt 6838633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 6265646 - 6265953
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    ||||||||||||| ||||||||||  |  ||||||||||||| | |||||| ||||||||||||| |||| |||||||||||| ||||| ||| |||| |    
T  6265646 gtctccaatatctcaacccattcagttacagagaattttctttggaagagaatccccaatgttttcagagttaaaggcaaccccccacattttgctacta 6265745  T
Q  101 ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattg 200  Q
    |||||||||||||  ||||||||||||||||||||    ||||  |||| |||||||| | ||||| ||| | ||||||| | ||||||| |||||||||    
T  6265746 ttttcttgccaatcaattcaagatttggatattcaaacacattcttgccttgaaaagcatatctcacaaataaactccaagagtcactctcctccaattg 6265845  T
Q  201 cttcaaatgaagaagtttggtggacttcatgactgatgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaagga 300  Q
    ||| |||||||| |||   |||||  |||| ||| | ||||||||  ||||| |||||||||| || ||||||| ||  | |||||||  ||||| ||||    
T  6265846 ctttaaatgaagtagtcgtgtggatctcataactaacgctacctcactgtcatgtgttgtcacgatcatcttacctcgagaagatccacggttaagagga 6265945  T
Q  301 agtagtaa 308  Q
    ||||||||    
T  6265946 agtagtaa 6265953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 6142241 - 6142518
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    |||||||||||| |||||||||||  || ||||||||||||   ||||||| ||||||||||||| |||||||| |||||||| |||||||||||||| |    
T  6142241 gtctccaatatcctaacccattcaatttcagagaattttctattcaagagaatccccaatgttttcagagctaatggcaaccccccacacttttctacta 6142340  T
Q  101 ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattg 200  Q
    |||||||||| ||  ||||||||||||||||| ||    ||||  | ||  ||||||| | ||||| ||| | ||||||| | | ||||| |||||||||    
T  6142341 ttttcttgcctatcaattcaagatttggatatccaaacacattcctacctggaaaagcatatctcacaaataaactccaagagttactctcctccaattg 6142440  T
Q  201 cttcaaatgaagaagtttggtggacttcatgactgatgctacctccttgtcacgtgttgtcacaataatcttacttcc 278  Q
    |||||||||||| |     | |||  |||||  ||||||||| ||||||||| ||||||||||||| |||||||||||    
T  6142441 cttcaaatgaagtatccgagcggaactcatgcttgatgctacttccttgtcatgtgttgtcacaatcatcttacttcc 6142518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 6168846 - 6169108
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    ||||| ||||||||||||||||||  || ||||||| ||||| |||||||| ||||||||||||||||||| |||||| |||| ||||| |||||||| |    
T  6168846 gtctctaatatcttaacccattcattttcagagaatcttctttgcaagagaatccccaatgtttttagagcaaaaggcgaccccccacatttttctacta 6168945  T
Q  101 ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattg 200  Q
    ||||| | ||||| |||||||||||||||||||||     |||  |||| | |||||| ||||| | ||| | ||||||| | ||||||| |||||||||    
T  6168946 ttttcataccaatcgattcaagatttggatattcaaacatattcctgccttcaaaagcatgtcttacaaataaactccaagagtcactctcctccaattg 6169045  T
Q  201 cttcaaatgaagaagtttggtggacttcatgactgatgctacctccttgtcacgtgttgtcac 263  Q
    | | |||||||| |  | ||||||  ||||||||||||| || || || ||| ||||||||||    
T  6169046 ccttaaatgaagtatctgggtggatctcatgactgatgcaacttctttatcatgtgttgtcac 6169108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 6259154 - 6259288
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    ||||||||||||||||||||||||  || |||||| |||||| |||||||| ||||||||||||| |||||| |||||||||| ||||| |||||||| |    
T  6259154 gtctccaatatcttaacccattcattttcagagaactttctttgcaagagaatccccaatgttttcagagctgaaggcaaccccccacatttttctacta 6259253  T
Q  101 ttttcttgccaattgattcaagatttggatattca 135  Q
    |||||||||| || |||||||||||||||||||||    
T  6259254 ttttcttgccgatcgattcaagatttggatattca 6259288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 6735917 - 6736290
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    |||||||||||||||| ||||||| ||| ||| | |||| | ||||| || |  ||||||| ||||| ||||| |||||||||||||||||| || || |    
T  6735917 gtctccaatatcttaatccattcatgttcagaaagttttttacgcaaaagttggcccaatgattttatagctagaggcaaccctccacacttctccacta 6736016  T
Q  101 ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattg 200  Q
    ||||||| ||||||||||||||||||||||||||||   || || | || ||||| || ||| ||| ||| |  |||||||| |  || || ||||||||    
T  6736017 ttttcttcccaattgattcaagatttggatattcacaaacactttttccttgaaacgcatgtgtcacaaataatctccaacaattgcttttttccaattg 6736116  T
Q  201 cttcaaatgaagaagtttggtggactt-----catgactgatgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaa 295  Q
     |  |||| ||  | || ||| || ||     ||||||  ||||||||||||| |||||||||||||| ||||| |||||||| | |||||||| |||||    
T  6736117 ttgtaaatcaaataattcggttgattttagaacatgac--atgctacctccttttcacgtgttgtcacgataattttacttccagaagatccatggttaa 6736214  T
Q  296 aaggaagtagtaagcgctcccaacattccgcactaccgttccagacatcatccaaaacaagcagatatttctttcc 371  Q
    | ||||||||||   |||||||| ||||  |||| || ||||||| |||||| ||||||||||  |||||||||||    
T  6736215 acggaagtagtagctgctcccaatattctacactcccattccagatatcatctaaaacaagcaagtatttctttcc 6736290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 368
Target Start/End: Original strand, 8471499 - 8471858
Alignment:
Q  9 tatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacgattttcttg 108  Q
    ||||||| |||||||  |||||||  ||||| | ||||| || || ||||||||||| | ||||||||||| |||||||||||| ||||| || || |||    
T  8471499 tatcttatcccattcgtgttgagaatattttttccgcaaaaggtttcccaatgttttcacagctaaaggcagccctccacacttatctacaatatttttg 8471598  T
Q  109 ccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattgcttcaaat 208  Q
    |||||||||||||||||||| ||||| ||    ||| ||||  |||||||  | ||   ||| | ||||||||| ||||||||||||||||| |||||||    
T  8471599 ccaattgattcaagatttgggtattcgctcaattttttgccaggaaaagcaagactggaaaataaactccaacagtcactcttctccaattgtttcaaat 8471698  T
Q  209 gaagaagtttggtggacttcatgactgatgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaaggaagtagtaa 308  Q
     ||  |  || || || ||||  | | |||||||||| ||||| |||||||||||||||||||||||    | |||||||| |||||| |||||||||||    
T  8471699 caaataactttgtagatttcacaattaatgctacctctttgtcgcgtgttgtcacaataatcttactcgtagaagatccatggttaaagggaagtagtaa 8471798  T
Q  309 gcgctcccaacattccgcactaccgttccagacatcatccaaaacaagcagatatttctt 368  Q
       |||||||| |||| || |    |||||||||||||||| |||||| ||||| |||||    
T  8471799 cttctcccaactttcctcattcagtttccagacatcatccacaacaagtagatagttctt 8471858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 6245242 - 6245504
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    ||||| ||||||||||||||||||  || ||||||| ||||| |||||||| ||||||||||||| |||||||||||| |||| ||||| |||||||| |    
T  6245242 gtctctaatatcttaacccattcattttcagagaatcttctttgcaagagaatccccaatgttttcagagctaaaggcgaccccccacatttttctacta 6245341  T
Q  101 ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattg 200  Q
    ||||| | ||||| |||||||||||||||||||||     |||  |||| | |||||| ||||| | ||| | ||||||| | ||||||| |||||||||    
T  6245342 ttttcataccaatcgattcaagatttggatattcaaacatattcctgccttcaaaagcatgtcttacaaataaactccaagagtcactctcctccaattg 6245441  T
Q  201 cttcaaatgaagaagtttggtggacttcatgactgatgctacctccttgtcacgtgttgtcac 263  Q
    | | |||||||| |  | |||| |  ||||||||||||| || || || ||| ||||||||||    
T  6245442 ccttaaatgaagtatctgggtgtatctcatgactgatgcaacttctttatcatgtgttgtcac 6245504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 6900043 - 6900316
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    |||||||| ||||||||||| ||| ||| |||||| ||||||  ||||||||||||||||||||| |||||||||||||||||| ||||||||| ||| |    
T  6900043 gtctccaacatcttaacccaatcaggttcagagaactttctttccaagagattccccaatgttttcagagctaaaggcaacccttcacacttttgtacta 6900142  T
Q  101 ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattg 200  Q
    |||  ||||| ||  |||| |||||||||||||||  | | ||| | ||  |||| || ||| ||| ||| | ||||||||| ||||||| || ||||||    
T  6900143 tttgtttgcctatcaattccagatttggatattcaaatacttttcttcctagaaaggcatgtttcacaaataaactccaacaatcactctccttcaattg 6900242  T
Q  201 cttcaaatgaagaagtttggtggacttcatgactgatgctacctccttgtcacgtgttgtcacaataatcttac 274  Q
     || |||||||| ||||  || ||  | |||| ||||||||| ||| | ||| ||||||||||||| |||||||    
T  6900243 ttttaaatgaagtagttgcgtagatcttatgattgatgctacttccatatcatgtgttgtcacaatcatcttac 6900316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 13270630 - 13270357
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    |||||||||||||||||||||| |  || ||||||||||||| |||||||| ||||||||||||| |||||||||||||| || ||||| |||||||| |    
T  13270630 gtctccaatatcttaacccatttaatttcagagaattttctttgcaagagaatccccaatgttttcagagctaaaggcaaacccccacatttttctacta 13270531  T
Q  101 ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattg 200  Q
    || || | || || |||||||||||||||||||||     |||  |||| | |||||| ||||||| ||| | ||||||| | ||||||| |||||||||    
T  13270530 ttctcataccgatggattcaagatttggatattcaaacatattcctgccttcaaaagcatgtctcacaaataaactccaagagtcactctcctccaattg 13270431  T
Q  201 cttcaaatgaagaagtttggtggacttcatgactgatgctacctccttgtcacgtgttgtcacaataatcttac 274  Q
    | | |||||||  |    | ||||  |||||||||||||||| || || ||| |||| ||||| ||||||||||    
T  13270430 ccttaaatgaattatccggttggatctcatgactgatgctacttcattatcatgtgtcgtcacgataatcttac 13270357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 56 - 371
Target Start/End: Complemental strand, 6554485 - 6554167
Alignment:
Q  56 ccaatgtttttagagctaaaggcaaccctccacacttttctacgattttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaa 155  Q
    |||||| ||||| |||||||||||||||||||||||| || || |||||| | ||||||| ||||||||||||||||||||   || || | || |||||    
T  6554485 ccaatgattttatagctaaaggcaaccctccacacttgtccactattttcctcccaattgtttcaagatttggatattcacacacactttttccttgaaa 6554386  T
Q  156 agcgtgtctcataaacatactccaacattcactcttctccaattgcttcaaatgaagaagtttggtggactt-----catgactgatgctacctccttgt 250  Q
    ||| ||| ||| ||| |  |||||||| |  || || |||||||| |  |||| ||  | |||||| || ||     ||||||  ||||||||||||| |    
T  6554385 agcatgtgtcacaaataatctccaacaattgcttttttccaattgttgtaaatcaaataatttggttgattttagaacatgac--atgctacctcctttt 6554288  T
Q  251 cacgtgttgtcacaataatcttacttccggtagatccattgttaaaaggaagtagtaagcgctcccaacattccgcactaccgttccagacatcatccaa 350  Q
    ||||||||||||| |||||| ||||||| | |||||||| |||||| ||||||||||   |||||||| ||||  |||| || ||||| | |||||| ||    
T  6554287 cacgtgttgtcacgataatcatacttccagaagatccatggttaaacggaagtagtagctgctcccaatattctacactcccattccatatatcatctaa 6554188  T
Q  351 aacaagcagatatttctttcc 371  Q
    ||||||||  |||||||||||    
T  6554187 aacaagcaagtatttctttcc 6554167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 6591430 - 6591105
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    |||||||||||||| | ||||||   |  |||||||||| || |||| || | ||||| |||||||||||||||||| | ||| |||||||||||||| |    
T  6591430 gtctccaatatcttcatccattcggttacagagaattttttttgcaaaagttgccccattgtttttagagctaaaggaatccccccacacttttctacta 6591331  T
Q  101 ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattg 200  Q
    |||||||||| ||  || ||||| |||||||||||    |||   | ||  ||||||| | ||||| ||| | ||||||| | ||||||| |||||||||    
T  6591330 ttttcttgcctatcaatacaagagttggatattcaaacacatccctacctcgaaaagcatatctcacaaataaactccaagagtcactctcctccaattg 6591231  T
Q  201 cttcaaatgaagaagtttggtggacttcatgactgatgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaagga 300  Q
     || |||| ||  || | ||||||   ||||| ||||||||| ||||||||| | |||||||| || ||||||||||| | |||||||| | |||| |||    
T  6591230 atttaaatcaactagctgggtggatcccatgattgatgctacttccttgtcatgcgttgtcaccatcatcttacttccagaagatccatggctaaacgga 6591131  T
Q  301 agtagtaagcgctcccaacattccgc 326  Q
    |||||||    |||||||||||||||    
T  6591130 agtagtagcatctcccaacattccgc 6591105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 6722168 - 6721852
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    ||||||||||||| | |||||||| ||| ||| |||  | ||| ||| ||||| ||||||||||| |||||||||||||||||||||||||||||| | |    
T  6722168 gtctccaatatctgatcccattcaagtttagaaaatcgtattctcaaaagattacccaatgttttcagagctaaaggcaaccctccacacttttctgcca 6722069  T
Q  101 ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattg 200  Q
     |||||||  ||  || |||||||||||| | |||     |||  ||||  ||||||| ||  ||| ||| || |||||| | ||||| | |||||||||    
T  6722068 ctttcttgataaccgactcaagatttggaaaatcaaacaaattcctgcctcgaaaagcatgattcacaaatatcctccaagagtcactttcctccaattg 6721969  T
Q  201 cttcaaatgaagaagtttggtggacttcatgactgatgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaagga 300  Q
     |  |||||||| ||   ||||||  |||||| ||||||||| |||||||| ||||||||||| || ||||||||||| | |||||||   |||||| ||    
T  6721968 atataaatgaagtagccgggtggatctcatgattgatgctacttccttgtcccgtgttgtcacgatcatcttacttcctgaagatccacatttaaaaaga 6721869  T
Q  301 agtagtaagcgctccca 317  Q
    ||||||||  |||||||    
T  6721868 agtagtaactgctccca 6721852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 6917056 - 6917317
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    ||||||| |||||||||||| ||||||| ||||||| |||| ||||||||||| |||| |  | | | || |||||||||||||||||| || ||||| |    
T  6917056 gtctccattatcttaacccactcacgtttagagaatcttctacgcaagagattacccatttctgtcacagttaaaggcaaccctccacatttgtctacta 6917155  T
Q  101 ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattg 200  Q
    |||||||||||||   |||||||||||||| || ||| |||||  |  | |||||||| || |||| ||| | ||||| |||  ||||||  || |||||    
T  6917156 ttttcttgccaataatttcaagatttggatgttgactcgcattcctatcatgaaaagcatgactcacaaataaactcctacaaccactctcttctaattg 6917255  T
Q  201 cttcaaatgaagaagtttggtggacttcatgactgatgctacctccttgtcacgtgttgtca 262  Q
    ||| |||| ||| ||   ||||||  |||||| ||||||||| |||||||||  ||||||||    
T  6917256 ctttaaatcaagtagccgggtggatctcatgattgatgctacttccttgtcatatgttgtca 6917317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 236 - 371
Target Start/End: Original strand, 6947434 - 6947569
Alignment:
Q  236 atgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaaggaagtagtaagcgctcccaacattccgcactaccgtt 335  Q
    ||||| ||||||| ||||| |||||||| |||||||||||||| | |||||||| |||||| ||||| |||||  ||||||||||||| |||   |||||    
T  6947434 atgctgcctccttttcacgagttgtcacgataatcttacttccagaagatccatggttaaagggaagaagtaacagctcccaacattctgcatccccgtt 6947533  T
Q  336 ccagacatcatccaaaacaagcagatatttctttcc 371  Q
    ||||| |||||| ||||||||||  |||||||||||    
T  6947534 ccagatatcatctaaaacaagcaagtatttctttcc 6947569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 7587802 - 7587921
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    |||||||||||||||| |||||||  |||||| ||||||||| ||| ||| |||||||||||||| | ||||| ||||||||||||||| || ||||| |    
T  7587802 gtctccaatatcttaaaccattcagcttgagaaaattttctttgcaggagtttccccaatgttttcacagctagaggcaaccctccacatttctctacaa 7587901  T
Q  101 ttttcttgccaattgattca 120  Q
    | ||||||||||| ||||||    
T  7587902 tcttcttgccaatcgattca 7587921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 6448889 - 6448504
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    |||||||||||||| | |||||||  |||||| || ||| | |||||  | |  |||| || ||||| |||||||||||||||||||||| | |  |  |    
T  6448889 gtctccaatatcttcatccattcatcttgagaaaactttttccgcaaatgttggcccagtgattttatagctaaaggcaaccctccacacatgttcaata 6448790  T
Q  101 ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattg 200  Q
    ||||| | ||||||||||||||| ||||||||||||   || |  | || |||||||| ||| ||| ||||| ||||||||| |  || || ||||||||    
T  6448789 ttttcctaccaattgattcaagaattggatattcacacacactctttccatgaaaagcatgtgtcaaaaacaaactccaacaattgcttttgtccaattg 6448690  T
Q  201 cttcaaatgaagaagtttggtggacttcat-----gac-tg--atgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgt 292  Q
     |  |||| ||  |  |||||||| |||||     ||| ||  ||||||||||||| ||||||||||||||||||||||||||||| | |||||||| ||    
T  6448689 gtgtaaatcaaataacttggtggatttcatttcaggacatgatatgctacctccttttcacgtgttgtcacaataatcttacttccagaagatccatggt 6448590  T
Q  293 taaaaggaagtagtaagcgctcccaacattccgcactaccgttccagacatcatccaaaacaagcagatatttctttcctgttagt 378  Q
    |||| ||||| ||||   ||||||||| ||| ||| | ||||||||||  || || |||||||| |  |||||||||| |||||||    
T  6448589 taaacggaagcagtacctgctcccaacgttctgcattcccgttccagatgtcgtctaaaacaagaaagtatttctttcttgttagt 6448504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 8454581 - 8454951
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    ||||||||||| |||| ||||||| ||| ||| ||| || | ||||  || |  ||||||| ||||| ||||||||||||||||||||||||||| || |    
T  8454581 gtctccaatatattaatccattcatgttcagaaaatgttttccgcagaagttggcccaatgattttatagctaaaggcaaccctccacacttttccacta 8454680  T
Q  101 ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattg 200  Q
    ||||  | |||| ||||||||||||||||||||||    || |  | || |||||||| ||| ||| ||| | ||||||||| |  || || ||||||||    
T  8454681 tttttctaccaactgattcaagatttggatattcagacacactctttccttgaaaagcatgtgtcacaaataaactccaacaattgcttttgtccaattg 8454780  T
Q  201 cttcaaatgaagaagtttggtggacttcatgac-tgat--gctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaa 297  Q
     |  |||| ||  |  |  || || |||| ||| | ||  || |||||||| |||||||||||||| | ||||||||||||   |||||||| ||||||     
T  8454781 ttgtaaatcaaataactctgtcgatttcaggacattatctgccacctccttctcacgtgttgtcacgacaatcttacttccaaaagatccatggttaaag 8454880  T
Q  298 ggaagtagtaagcgctcccaacattccgcactaccgttccagacatcatccaaaacaagcagatatttctt 368  Q
    |||||||||||   |||||||| |||||||   |||||||||| ||| || |||||||||| |||||||||    
T  8454881 ggaagtagtaacaactcccaacgttccgcatccccgttccagatatcgtctaaaacaagcaaatatttctt 8454951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 7749954 - 7750088
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    ||||||||||| |||| |||||||  || | |||||||  || |||| |  | ||||||||||| |||||||||||||||||| |||||||||||||| |    
T  7749954 gtctccaatattttaatccattcagtttcacagaatttgttttgcaataattgccccaatgtttctagagctaaaggcaaccccccacacttttctacta 7750053  T
Q  101 ttttcttgccaattgattcaagatttggatattca 135  Q
    |||||||||| || || || |||||||||||||||    
T  7750054 ttttcttgccgatcgactcgagatttggatattca 7750088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 236 - 371
Target Start/End: Complemental strand, 6479846 - 6479711
Alignment:
Q  236 atgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaaggaagtagtaagcgctcccaacattccgcactaccgtt 335  Q
    |||| |||||||| |||||||||||||| ||||||||||||||   |||||||| |||||| |||||||||||  |||||||| | ||  || | || ||    
T  6479846 atgccacctccttttcacgtgttgtcacgataatcttacttccaaaagatccatggttaaatggaagtagtaactgctcccaatactctacattcccatt 6479747  T
Q  336 ccagacatcatccaaaacaagcagatatttctttcc 371  Q
    ||||| |||||| ||||||||||  |||||||||||    
T  6479746 ccagatatcatctaaaacaagcaagtatttctttcc 6479711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 6520264 - 6519954
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    |||||||||||||  | |||||||  |||||| || ||| ||||||| || |  ||||||| ||||| ||||||||||||||| |||||||| || || |    
T  6520264 gtctccaatatctccatccattcatcttgagaaaacttttttcgcaaaagttggcccaatgattttatagctaaaggcaacccaccacacttgtccacta 6520165  T
Q  101 ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattg 200  Q
    ||||| ||||||| | |||||| |||||||| ||||   ||    |||| |||||||| ||| ||  ||| | ||||||||| |  || || ||||||||    
T  6520164 ttttcatgccaatcgtttcaagttttggatagtcacacacacgcatgccttgaaaagcatgtgtctcaaataaactccaacaattgcttttgtccaattg 6520065  T
Q  201 cttcaaatgaagaagtttggtggacttcatgac-tga--tgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaa 297  Q
     |  |||||||  |  | |||||| |||| ||| |||  |||||||| ||| |||||||||||||| |||||||||||||| | |||||||| |||||      
T  6520064 atgtaaatgaattaactcggtggagttcaggacatgatctgctaccttcttttcacgtgttgtcacgataatcttacttccagaagatccatggttaagc 6519965  T
Q  298 ggaagtagtaa 308  Q
    |||||||||||    
T  6519964 ggaagtagtaa 6519954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 6947196 - 6947325
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    |||||||||||||  | |||||||  |||||| || ||| ||||||| || |  |||| || ||||| |||||||||||||||||||||||| || || |    
T  6947196 gtctccaatatctgcatccattcatcttgagaaaacttttttcgcaaaagttggcccagtgattttatagctaaaggcaaccctccacacttgtccacta 6947295  T
Q  101 ttttcttgccaattgattcaagatttggat 130  Q
    ||||| | |||||||||||||| |||||||    
T  6947296 ttttcctcccaattgattcaagttttggat 6947325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 6480084 - 6479949
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    |||||||||||||| | |||||||  |||||| || ||| | ||||| || |  ||||||| | ||| |||||||||||||||| ||||||| || |  |    
T  6480084 gtctccaatatcttcatccattcatcttgagaaaactttttccgcaaaagttggcccaatgatattatagctaaaggcaacccttcacacttgtccatta 6479985  T
Q  101 ttttcttgccaattgattcaagatttggatattcac 136  Q
    ||||| |||||||||||||||| |||||||| ||||    
T  6479984 ttttcctgccaattgattcaagttttggatagtcac 6479949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 4 - 190
Target Start/End: Complemental strand, 25242256 - 25242067
Alignment:
Q  4 tccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctac---ga 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||| ||||||||||||| ||||||||||||||||    |    
T  25242256 tccaatatcttaacccattcatgttgagagaattttcttcgcaagagattccccgttgtttttacagctaaaggcaacgctccacacttttctactatta 25242157  T
Q  101 ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactct 190  Q
    ||||||||||||||||| |||||||||||||||||||||||||  | ||||||||||| || |||  ||||| ||||||||| |||||||    
T  25242156 ttttcttgccaattgatgcaagatttggatattcacttgcattccttccgtgaaaagcatgcctctcaaacacactccaacaatcactct 25242067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 7579 - 7206
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga 100  Q
    |||||||||||||||| ||||||| ||| ||| |||||||| ||||  || |   |||||| ||||| |||||||||||||||||||||||| || || |    
T  7579 gtctccaatatcttaatccattcatgttcagaaaattttctacgcagaagttgtgccaatgattttatagctaaaggcaaccctccacacttgtccacta 7480  T
Q  101 ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattg 200  Q
    ||||||| ||||||| ||||||||||||||||||||   || || | || |||||||| ||| ||| ||| |  |||||||| |  || || ||||||||    
T  7479 ttttcttcccaattgtttcaagatttggatattcacacacactttttccttgaaaagcatgtgtcacaaataatctccaacaattgcttttttccaattg 7380  T
Q  201 cttcaaatgaagaagtttggtggactt-----catgactgatgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaa 295  Q
     |  |||| ||  | |||||| || ||     ||||||  ||||||||||||| |||||||||||||| ||||| |||||||| | |||||||| |||||    
T  7379 ttgtaaatcaaataatttggttgattttagaacatgac--atgctacctccttttcacgtgttgtcacgataattttacttccagaagatccatggttaa 7282  T
Q  296 aaggaagtagtaagcgctcccaacattccgcactaccgttccagacatcatccaaaacaagcagatatttctttcc 371  Q
    | ||||||||||   |||||||| ||||  |||| || ||||| | |||||| ||||||||||  |||||||||||    
T  7281 acggaagtagtagctgctcccaatattctacactcccattccatatatcatctaaaacaagcaagtatttctttcc 7206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 4 - 360
Target Start/End: Complemental strand, 6573394 - 6573038
Alignment:
Q  4 tccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacgattt 103  Q
    ||||||||||||| ||||||||  ||||| ||||||||| |||||||||||||||||||||| |  |||||||||||||||||||| || ||||| || |    
T  6573394 tccaatatcttaaaccattcaccctgagaaaattttctttgcaagagattccccaatgttttcacggctaaaggcaaccctccacatttgtctacaatct 6573295  T
Q  104 tcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattgctt 203  Q
     ||||||||| ||||||||||||||||| |||    ||||| | ||  ||||||| ||| ||| ||| | ||||||||| ||  ||| |||||| | |||    
T  6573294 ccttgccaatcgattcaagatttggatagtcaaacacattttttcctcgaaaagcatgtttcacaaataaactccaacaatctttctcctccaaattctt 6573195  T
Q  204 caaatgaagaagtttggtggacttcatgactgatgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaaggaagt 303  Q
     ||| ||||  | | |   || ||||||||  |||| || |  |||||||||||||||||||||||||| |||||   | |||||| ||| |||| ||||    
T  6573194 taaaagaagttgatggtcagatttcatgaccaatgcaacgtttttgtcacgtgttgtcacaataatcttgcttcctaaaaatccatggttgaaagaaagt 6573095  T
Q  304 agtaagcgctcccaacattccgcactaccgttccagacatcatccaaaacaagcaga 360  Q
    |||||  ||||| |||| ||| || | || ||||| |||||||| | ||||||||||    
T  6573094 agtaattgctccaaacactcctcattccctttccacacatcatctagaacaagcaga 6573038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 35140443 - 35140303
Alignment:
Q  1 gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaacc------ctccacactttt 94  Q
    ||||||||||||||||||||||||  ||  |||||||||||| |||||||| |||||| |||||| ||||||||||  ||||      | ||||| ||||    
T  35140443 gtctccaatatcttaacccattcattttcggagaattttctttgcaagagaatccccagtgttttcagagctaaagataacccccccaccccacattttt 35140344  T
Q  95 ctacgattttcttgccaattgattcaagatttggatattca 135  Q
    |||| | |||| | ||||| | |||||||||||||||||||    
T  35140343 ctactagtttcataccaatcgtttcaagatttggatattca 35140303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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