View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15762_low_9 (Length: 367)
Name: NF15762_low_9
Description: NF15762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15762_low_9 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 35 - 242
Target Start/End: Complemental strand, 24860323 - 24860115
Alignment:
| Q |
35 |
ttaattatatatctggtcccttaaataattaccacaattcgttttggtcccttaattatttttaggctcattttggtcctttaattaagctccgtccatc |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
24860323 |
ttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattatttttagactcattttggtcctttaattaagctccgtccatc |
24860224 |
T |
|
| Q |
135 |
gtttatgccctttccgtcaaattttaattttgaaacgttaagtctc-tatatggtcgctgatgtggcgcttatgggttggagataagggtctgaggtggc |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24860223 |
gtttatgccctttccgtcaaattttaattttgaaacgttaagtctcacatatggtcgctgatgtggcgcttatgggttggagataagggtctgaggtggc |
24860124 |
T |
|
| Q |
234 |
ataagttga |
242 |
Q |
| |
|
||||||||| |
|
|
| T |
24860123 |
ataagttga |
24860115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 35 - 242
Target Start/End: Original strand, 24858947 - 24859154
Alignment:
| Q |
35 |
ttaattatatatctggtcccttaaataattaccacaattcgttttggtcccttaattatttttaggctcattttggtcctttaattaagctccgtccatc |
134 |
Q |
| |
|
|||||||||||||| | || ||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
24858947 |
ttaattatatatctaggcc-ttaaataattatcaaaattcgttttggtcccttaattatttttaggttcattttggtcctttaattaagctccgtccatc |
24859045 |
T |
|
| Q |
135 |
gtttatgccctttccgtcaaattttaattttgaaacgttaagtctc-tatatggtcgctgatgtggcgcttatgggttggagataagggtctgaggtggc |
233 |
Q |
| |
|
|||| || |||||||| ||| || ||| |||| |||||||||| | |||| ||||||||||||||| ||| |||||||| |||||| ||||||||| |
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|
| T |
24859046 |
gtttttgttctttccgttaaaaatttattaagaaatgttaagtctcacacatgggcgctgatgtggcgctaatgagttggagaaaagggtttgaggtggc |
24859145 |
T |
|
| Q |
234 |
ataagttga |
242 |
Q |
| |
|
||||||||| |
|
|
| T |
24859146 |
ataagttga |
24859154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 24860034 - 24860000
Alignment:
| Q |
320 |
aagcttgttcttcaacttcccttcattgttcatct |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
24860034 |
aagcttgttcttcaacttcccttcattgttcatct |
24860000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 35 - 242
Target Start/End: Complemental strand, 20487358 - 20487150
Alignment:
| Q |
35 |
ttaattatatatctggtcccttaaataattaccacaattcgttttggtcccttaattatttttaggctcattttggtcctttaattaagctccgtccatc |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||| |
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|
| T |
20487358 |
ttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattttagtctcattttggtcctttaattaagatccgtccatc |
20487259 |
T |
|
| Q |
135 |
gtttatgccctttccgtcaaattttaattttgaaacgttaagtctc-tatatggtcgctgatgtggcgcttatgggttggagataagggtctgaggtggc |
233 |
Q |
| |
|
||||||| ||||||||||||| ||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
20487258 |
gtttatgtcctttccgtcaaactttaattaagaaacgttaagtctcacacatggtcgctgatgtggcgcttatgggttggagataagggtatgaggtggc |
20487159 |
T |
|
| Q |
234 |
ataagttga |
242 |
Q |
| |
|
||||||||| |
|
|
| T |
20487158 |
ataagttga |
20487150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 35 - 242
Target Start/End: Original strand, 20481645 - 20481853
Alignment:
| Q |
35 |
ttaattatatatctggtcccttaaataattaccacaattcgttttggtcccttaattatttttaggctcattttggtcctttaattaagctccgtccatc |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| |||||| ||||||||||||||||||||||| | |||||||| |
|
|
| T |
20481645 |
ttaattatatatctggtcccttaaataattaccaaaattcggtttggtcccttatttaattttagtctcattttggtcctttaattaagattcgtccatc |
20481744 |
T |
|
| Q |
135 |
gtttatgccctttccgtcaaattttaattttgaaacgttaagtctc-tatatggtcgctgatgtggcgcttatgggttggagataagggtctgaggtggc |
233 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||||| |||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20481745 |
gtttatgtcctttccgtcaaactttaattaagaaacgctaagtctcacacatggttgctgatgtggcgcttatgggttggagataagggtctgaggtggc |
20481844 |
T |
|
| Q |
234 |
ataagttga |
242 |
Q |
| |
|
||||||||| |
|
|
| T |
20481845 |
ataagttga |
20481853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 20481936 - 20481970
Alignment:
| Q |
320 |
aagcttgttcttcaacttcccttcattgttcatct |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
20481936 |
aagcttgttcttcaacttcccttcattgttcatct |
20481970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 35 - 242
Target Start/End: Complemental strand, 21967137 - 21966929
Alignment:
| Q |
35 |
ttaattatatatctggtcccttaaataattaccacaattcgttttggtcccttaattatttttaggctcattttggtcctttaattaagctccgtccatc |
134 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||| ||| || |||||||||||||||||||||| | |||||||| |
|
|
| T |
21967137 |
ttaattatatatctggtccctcaaataattaccaatattcattttggtcccttaattaatttaagtttcattttggtcctttaattaagattcgtccatc |
21967038 |
T |
|
| Q |
135 |
gtttatgccctttccgtcaaattttaattttgaaacgttaagtctc-tatatggtcgctgatgtggcgcttatgggttggagataagggtctgaggtggc |
233 |
Q |
| |
|
||||||| ||||||||||||| |||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21967037 |
gtttatgtcctttccgtcaaacattaattaagaaacgttaagtctcacacatggtcgctgatgtggcgcttatgggttggagataagggtctgaggtggc |
21966938 |
T |
|
| Q |
234 |
ataagttga |
242 |
Q |
| |
|
||||||||| |
|
|
| T |
21966937 |
ataagttga |
21966929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 35 - 242
Target Start/End: Complemental strand, 21989573 - 21989365
Alignment:
| Q |
35 |
ttaattatatatctggtcccttaaataattaccacaattcgttttggtcccttaattatttttaggctcattttggtcctttaattaagctccgtccatc |
134 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||| ||| || |||||||||||||||||||||| | |||||||| |
|
|
| T |
21989573 |
ttaattatatatctggtccctcaaataattaccaatattcattttggtcccttaattaatttaagtttcattttggtcctttaattaagattcgtccatc |
21989474 |
T |
|
| Q |
135 |
gtttatgccctttccgtcaaattttaattttgaaacgttaagtctc-tatatggtcgctgatgtggcgcttatgggttggagataagggtctgaggtggc |
233 |
Q |
| |
|
||||||| ||||||||||||| |||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21989473 |
gtttatgtcctttccgtcaaacattaattaagaaacgttaagtctcacacatggtcgctgatgtggcgcttatgggttggagataagggtctgaggtggc |
21989374 |
T |
|
| Q |
234 |
ataagttga |
242 |
Q |
| |
|
||||||||| |
|
|
| T |
21989373 |
ataagttga |
21989365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 35 - 208
Target Start/End: Original strand, 21966571 - 21966744
Alignment:
| Q |
35 |
ttaattatatatctggtcccttaaataattaccacaattcgttttggtcccttaattatttttaggctcattttggtcctttaattaagctccgtccatc |
134 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||| |||||| |||||||||||||||||||||| | |||||||| |
|
|
| T |
21966571 |
ttaattatatatttggtcccttaaataattaccaaaattcgttttggtcctttaattaattttagtttcattttggtcctttaattaagattcgtccatc |
21966670 |
T |
|
| Q |
135 |
gtttatgccctttccgtcaaattttaattttgaaacgttaagtctc-tatatggtcgctgatgtggcgcttatgg |
208 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||| | |||||||| | ||||||||||||||||||||||||| |
|
|
| T |
21966671 |
gtttatgtcctttccgtcaaacattaattaagaaatg-taagtctcacacatggtcgctgatgtggcgcttatgg |
21966744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 35 - 208
Target Start/End: Original strand, 21989007 - 21989180
Alignment:
| Q |
35 |
ttaattatatatctggtcccttaaataattaccacaattcgttttggtcccttaattatttttaggctcattttggtcctttaattaagctccgtccatc |
134 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||| |||||| |||||||||||||||||||||| | |||||||| |
|
|
| T |
21989007 |
ttaattatatatttggtcccttaaataattaccaaaattcgttttggtcctttaattaattttagtttcattttggtcctttaattaagattcgtccatc |
21989106 |
T |
|
| Q |
135 |
gtttatgccctttccgtcaaattttaattttgaaacgttaagtctc-tatatggtcgctgatgtggcgcttatgg |
208 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||| | |||||||| | ||||||||||||||||||||||||| |
|
|
| T |
21989107 |
gtttatgtcctttccgtcaaacattaattaagaaatg-taagtctcacacatggtcgctgatgtggcgcttatgg |
21989180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 21072071 - 21072039
Alignment:
| Q |
204 |
tatgggttggagataagggtctgaggtggcata |
236 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
21072071 |
tatgggttggagataaggttctgaggtggcata |
21072039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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