View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15763_low_11 (Length: 228)
Name: NF15763_low_11
Description: NF15763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15763_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 30801447 - 30801248
Alignment:
| Q |
12 |
agcataggtattatccttgcatatgtaatagtttgatctaataaaccttttttaacagagagtgtgtaggggatttctcaaatgaagttaaggaattagg |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30801447 |
agcataagtattatccttgcatatgtaatagtttgatctaataaaccttttttaacagagagtgtgtaggggatttctcaaatgaagttaaggaattagg |
30801348 |
T |
|
| Q |
112 |
ttcgcggctcatgaatttgatcagtgaagggctcggcctgaagtgtggatattttgacaatgatcttaccgggtcaatgattctttcggttaatcattat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30801347 |
ttcgcggctcatgaatttgatcagtgaagggctcggcctgaagtgtggatattttgacaatgatcttaccgggtcaatgattctttcggttaatcattat |
30801248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 51 - 211
Target Start/End: Complemental strand, 30808835 - 30808675
Alignment:
| Q |
51 |
aataaaccttttttaacagagagtgtgtaggggatttctcaaatgaagttaaggaattaggttcgcggctcatgaatttgatcagtgaagggctcggcct |
150 |
Q |
| |
|
|||| ||||||||| ||| || ||||| || |||||||||| |||||||||| || | |||||| || |||||||||| || |||||||||| ||||| |
|
|
| T |
30808835 |
aatagaccttttttggcagggaatgtgttggtgatttctcaactgaagttaagaaactgggttcgaggatcatgaatttattcggtgaagggcttggcct |
30808736 |
T |
|
| Q |
151 |
gaagtgtggatattttgacaatgatcttaccgggtcaatgattctttcggttaatcattat |
211 |
Q |
| |
|
||| ||| ||||||||||||||||||||||| ||||| || | ||||||||||||||| |
|
|
| T |
30808735 |
agagtatggttattttgacaatgatcttaccggttcaattcttttgtcggttaatcattat |
30808675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 180
Target Start/End: Complemental strand, 30793673 - 30793562
Alignment:
| Q |
74 |
tgtgtaggggatttctcaaatgaagttaaggaattaggttcgcggctcatgaatttgatcagtgaag-----ggctcggcctgaagtgtggatattttga |
168 |
Q |
| |
|
|||||||| ||||| |||||||||||||| |||||||||||| ||||||||||||||||||| | || || | || ||||||||||||||||||| |
|
|
| T |
30793673 |
tgtgtaggagatttttcaaatgaagttaaagaattaggttcgaggctcatgaatttgatcaggggaggacttggtttggtttgaagtgtggatattttga |
30793574 |
T |
|
| Q |
169 |
caatgatcttac |
180 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30793573 |
caatgatcttac |
30793562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 193
Target Start/End: Complemental strand, 30783785 - 30783691
Alignment:
| Q |
99 |
ttaaggaattaggttcgcggctcatgaatttgatcagtgaagggctcggcctgaagtgtggatattttgacaatgatcttaccgggtcaatgatt |
193 |
Q |
| |
|
||||||| || |||| | || ||||| ||||||| ||||||||||| || ||| || |||||||||||||||| ||||||||||| ||| ||||| |
|
|
| T |
30783785 |
ttaaggagttgggttggaggatcatggatttgattagtgaagggcttggtctgcagcgtggatattttgacaacgatcttaccggatcattgatt |
30783691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 175
Target Start/End: Complemental strand, 30759282 - 30759174
Alignment:
| Q |
67 |
cagagagtgtgtaggggatttctcaaatgaagttaaggaattaggttcgcggctcatgaatttgatcagtgaagggctcggcctgaagtgtggatatttt |
166 |
Q |
| |
|
|||| ||||||| ||||||| |||| | || ||||||| || ||||| || ||||||||||||| ||||||||||| || || ||||||||||||| |
|
|
| T |
30759282 |
cagaaagtgtgttggggattattcaactaaaattaaggagttgggttcaaggatcatgaatttgattagtgaagggcttggtttggagtgtggatatttc |
30759183 |
T |
|
| Q |
167 |
gacaatgat |
175 |
Q |
| |
|
||||||||| |
|
|
| T |
30759182 |
gacaatgat |
30759174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 193
Target Start/End: Complemental strand, 30740509 - 30740383
Alignment:
| Q |
67 |
cagagagtgtgtaggggatttctcaaatgaagttaaggaattaggttcgcggctcatgaatttgatcagtgaagggctcggcctgaagtgtggatatttt |
166 |
Q |
| |
|
|||||| ||||| |||||||| || | | || ||||||| || ||||| || || || |||| ||||| ||||| | || |||||||||||||||||| |
|
|
| T |
30740509 |
cagagaatgtgttggggatttttcgattaaaattaaggagttgggttcaaggatcttggatttaatcagcaaagggattggtctgaagtgtggatatttt |
30740410 |
T |
|
| Q |
167 |
gacaatgatcttaccgggtcaatgatt |
193 |
Q |
| |
|
|| || |||||| |||| ||||||||| |
|
|
| T |
30740409 |
gaaaacgatcttgccggatcaatgatt |
30740383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 30746134 - 30746058
Alignment:
| Q |
99 |
ttaaggaattaggttcgcggctcatgaatttgatcagtgaagggctcggcctgaagtgtggatattttgacaatgat |
175 |
Q |
| |
|
||||||| || ||||| || |||||||||| || ||||||||||| || || ||||||||||||| ||||||||| |
|
|
| T |
30746134 |
ttaaggagttgggttcaaggatcatgaatttaattagtgaagggcttggtttggagtgtggatatttcgacaatgat |
30746058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 30767585 - 30767509
Alignment:
| Q |
99 |
ttaaggaattaggttcgcggctcatgaatttgatcagtgaagggctcggcctgaagtgtggatattttgacaatgat |
175 |
Q |
| |
|
||||||| || ||||| || |||||||||| || ||||||||||| || || ||||||||||||| ||||||||| |
|
|
| T |
30767585 |
ttaaggagttgggttcaaggatcatgaatttaattagtgaagggcttggtttggagtgtggatatttcgacaatgat |
30767509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University