View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15763_low_2 (Length: 499)
Name: NF15763_low_2
Description: NF15763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15763_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 462
Target Start/End: Original strand, 2473435 - 2473884
Alignment:
| Q |
18 |
ctcagagaggcaatacgaccattccatgaataagcaaataaatcttcaaatnnnnnnnnaagatcatctataggcgttggctgtttgagaattttagttt |
117 |
Q |
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|||| |||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||| |
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| T |
2473435 |
ctcatagagtcaatactaccattccatgaataagcaaataaatcttcaaatggtgtgggaagatcatctataggctttggctgtttgagaattttatttt |
2473534 |
T |
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| Q |
118 |
tccacaaaagcaatatttcaccctctgcaagacattccatataaagctttgaggatccccatgagttatgacatagcttggaaacacattgcactccaat |
217 |
Q |
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||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||| |
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| T |
2473535 |
tccacaaaatcaatatttatccctctgcaagacattccatataaagctttgaggatccccatgagttatgacattgcttggacacacattgcagtccaat |
2473634 |
T |
|
| Q |
218 |
atatggtgcctgcaaccttgtacccctttctttaaccaccatcatcagtaatgtgatagactccattttgcaactaaattttttag--------aaatct |
309 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
2473635 |
atatggtgcctgcaaccttgtacccctttcttta---accaacatcagtaatgtgatagcctccattttgcaactaaattttttagccaagttaaaatct |
2473731 |
T |
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| Q |
310 |
aaaatattgtgaatgtcaccacagtcaaccaactcattcccatatagtgcttttactatctcagttactgagacttcttcctcataatcaacaaaaatac |
409 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2473732 |
aaaatattgtgaatgtcaccacagtcaactaactcattcccatatagtgcttttacaatctcagttactgaaacttcttcctcataatcaacaaaaatac |
2473831 |
T |
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| Q |
410 |
aactaagattaaaacacttagtgtcaagagagtaaaccacataaatcctaacc |
462 |
Q |
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| T |
2473832 |
aactaagattaaaacagttggtgtcaagagagtaaaccacataaatcctaacc |
2473884 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 462
Target Start/End: Complemental strand, 39625574 - 39625501
Alignment:
| Q |
389 |
cctcataatcaacaaaaatacaactaagattaaaacacttagtgtcaagagagtaaaccacataaatcctaacc |
462 |
Q |
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|||||||| |||||| || | ||||| |||||||| |||| || ||||||| | ||||||||||||||||||| |
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| T |
39625574 |
cctcataagcaacaagaagaaaactatgattaaaagacttgatggcaagagaattaaccacataaatcctaacc |
39625501 |
T |
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