View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15763_low_3 (Length: 497)
Name: NF15763_low_3
Description: NF15763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15763_low_3 |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 10 - 497
Target Start/End: Original strand, 11378869 - 11379370
Alignment:
| Q |
10 |
catcatcagattttagtttcaacaatgaatataatcactttaattaacaacaaaaatgaagaacc---cagagttttcactgatgactaataatctaaca |
106 |
Q |
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| T |
11378869 |
catcatcagatttgagtttcaacaatgaatataatcactttaattagcaacaaaaatgaagaacctatcagagttttcactgatgactaataatctaaca |
11378968 |
T |
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| Q |
107 |
ctaaacttaatacaatactggtatgatacatgttatttaaaatgataatggattaatggtgatacagatgttgggatacattgatttcaagaaatcaaag |
206 |
Q |
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| T |
11378969 |
ctaaacttaatacaatactggtatgatacatgttatttaaaatgataatggattaatggtgatacagatgttgggatacattgatttcaagaaatcaaag |
11379068 |
T |
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| Q |
207 |
taatggcttagagatctatgtaataaacataactaaaccattaaacattaatggctaagtcctaaaag----------taaataaacaattattaaaaat |
296 |
Q |
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| T |
11379069 |
taatggcttagagatctatgtaataaacataactaaaccattaaacattaatggctaagtcctaaaagtaaataaacataaataaacaattattaaaaat |
11379168 |
T |
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| Q |
297 |
gaaggg-taagtcccaatcttagctggttggttaggaaatacctaacaggggcggtagggcttactttcaacttgaatgaaatttggatttgaggaagtg |
395 |
Q |
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| T |
11379169 |
gaagggttaagtcccaatcttagctggttggttaggaaatacctaacaggggcggtagggcttactttcaacttgaatgaaatttggatttgaggaagtg |
11379268 |
T |
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| Q |
396 |
tatatgacaggtactgggataaactgagaaaaatgtctacttgaatgccaactcgagtctcgaattaccgaagatagcttagggttggtgaggggctttt |
495 |
Q |
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| T |
11379269 |
tatatgacaggtattgggataaactgagaaaaatgtctacttgaatgccaactcgagtctcgaattaccgaagatagcttagggttggtgaggggctttt |
11379368 |
T |
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| Q |
496 |
gg |
497 |
Q |
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| T |
11379369 |
gg |
11379370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 155 - 497
Target Start/End: Complemental strand, 2580244 - 2579909
Alignment:
| Q |
155 |
tggattaatggtgatacagatgttgggatacattgatttcaagaaatcaaagtaatggcttagagatctatgtaataaacataactaaaccattaaacat |
254 |
Q |
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| T |
2580244 |
tggattaatggtgatacagatcttgggatacattgatttcaagaaatgaaagtaatggcttagagatctaagtaataa-------taaaccattaaacat |
2580152 |
T |
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| Q |
255 |
taatggctaagtcctaaaagtaa---------ataaacaattattaaaaatgaagggt-aagtcccaatcttagctggttggttaggaaatacctaacag |
344 |
Q |
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| T |
2580151 |
caatggctaagtcctaaaagtaataaacataaataaacaattattaaaaatgaagggttaagtcctaaacttag----ttggttaggaaatatctaacag |
2580056 |
T |
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| Q |
345 |
gggcggtagggcttactttcaacttgaatgaaatttggatttgaggaagtgtatatgacaggtactgggataaactgagaaaaatgtctacttgaatgcc |
444 |
Q |
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| T |
2580055 |
gggcggtggggcttacttacaacttgaatgaaatttggatttgaggaagtgtatatgacaggtattgggataaactgagaaagatgtctacttgaatgcc |
2579956 |
T |
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| Q |
445 |
aactcgagtctcgaattaccg-aagatagcttagggttggtgaggggcttttgg |
497 |
Q |
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|| || ||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
2579955 |
aa-------cttgaattaccgaaagatagcttatggttggtgaggggcttttgg |
2579909 |
T |
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