View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15763_low_4 (Length: 479)
Name: NF15763_low_4
Description: NF15763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15763_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 49 - 461
Target Start/End: Complemental strand, 5716180 - 5715737
Alignment:
| Q |
49 |
agtatgctactat-aaaaatagcttgtcataaaacttttt-atctactcaatttgttagtcaccacttgaagagtgggttaggatt------gatagttg |
140 |
Q |
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| T |
5716180 |
agtatgcaactattaaaaatagtttgtcataaaacttttttatatactcaatttgttagtcaccacttgaagagtgggttaagatttgaatagattcttg |
5716081 |
T |
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| Q |
141 |
catatcagttaacagcaaacaaagtatggaaagttaattaccgagtaacatgaaagaat------------tatgatccattttcttaatttg------- |
221 |
Q |
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| T |
5716080 |
catatcagttaacagcaaacaaagtatggaaagataattactgagtaacatgaaataatatctcaattgtatatgatccatattcttaatttttgtttac |
5715981 |
T |
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| Q |
222 |
----aagtggttctcaacaagtgtaacaattattcaaattttcaataatttaatgnnnnnnngaatttgaaagagatatttaaaccctcttgagattttg |
317 |
Q |
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| T |
5715980 |
aaaaaagtggttctcaacaagtgtaacaattattcaaattttcaataatttaacgattttttgaatttgaaagagatatttaaaccctcttgagattttg |
5715881 |
T |
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| Q |
318 |
tggaaagatattattttctaaaaatagtttatcatgaatctgtgcccacacctatttcagccaaacaccattacaagcttctcaaccattattctcatta |
417 |
Q |
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| T |
5715880 |
tggaaagatattattttctaaaaatagtttatcatgaatctgtgcccacacctatttcagccaaacacaattacaagcttctcaatcattattctcatta |
5715781 |
T |
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| Q |
418 |
ttgacaaaaaccattgaagacttttcaatcattgagtccattat |
461 |
Q |
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| T |
5715780 |
ttgacaaaaaccattgaagacttttcaatcattgagtccattat |
5715737 |
T |
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