View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15763_low_5 (Length: 368)
Name: NF15763_low_5
Description: NF15763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15763_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 176 - 335
Target Start/End: Original strand, 37664846 - 37665005
Alignment:
| Q |
176 |
tgagattgaaatgtgaaatgcaatacagaaacagaccgtttgtttttaatagaagtaattcacggtgctaatcttcttcttcgtcggaatggtaaaggca |
275 |
Q |
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| T |
37664846 |
tgagattgaaatgtgaaatgcaatacagaaacagaccgtttgtttttaatagaagtaattcacggtgctaatcttcttcttcgtcggaatggtgaaggca |
37664945 |
T |
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| Q |
276 |
tgtttgatttggcgggaaaatgaaaactggattggtagttaatttcgatgattgattctt |
335 |
Q |
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| T |
37664946 |
tgtttgatttggcgggaaaatgaaaactggattggtagttaatttcgatgattgattctt |
37665005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 37664669 - 37664808
Alignment:
| Q |
1 |
caagcaccaatgttcaattcatttatgtatattcaagcatctcgacacaaaaatctaattaaattttatgatc--atatatattctaccgtctcaacgca |
98 |
Q |
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| T |
37664669 |
caagcaccaatgttcaattcatttatgtatattcaagcatctcgacacaaaaatctaattaaattttatgatcatatatatattctaccgtctcaacgca |
37664768 |
T |
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| Q |
99 |
aacaaaacataatcgaactatttttcctaagacattttct |
138 |
Q |
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| T |
37664769 |
aacaaaacataatcgaactatttttcctaagacattttct |
37664808 |
T |
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