View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15763_low_6 (Length: 357)
Name: NF15763_low_6
Description: NF15763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15763_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 71 - 341
Target Start/End: Complemental strand, 32417191 - 32416919
Alignment:
| Q |
71 |
tctttctctttgatattgattc--gtttaatgtttgagttgccctaaaatcatgtccttgatataaagggttttctattcacaaagctaggaacaaactt |
168 |
Q |
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| T |
32417191 |
tctttctctttgatattgattcttgtttaatgtttgagttggcctaaaatcatgtccttgatataaagcgttttctattcacaaagctaggaacaaactt |
32417092 |
T |
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| Q |
169 |
gaaggactttgtgctttcaccatgtcaccacctatgactagctctgagtaaggaaccttcctttttatcctaaagttgtagttatcttcctagttatgat |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32417091 |
gaaggactttgtgctttcaccatgtcaccacctatgactagctctgagtaaggaaccttccttattatcctaaagttgtagttatcttcctagttatgat |
32416992 |
T |
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| Q |
269 |
tcttactaagctactcgtattggcctataagacttcacctcgtgttgtgtcgaatgggagattaggatctttg |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32416991 |
tcttactaagctactcgtattggcctataagacttcacctcgtgttgtgtcgaatgggagattaggatttttg |
32416919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 32417209 - 32417179
Alignment:
| Q |
16 |
atgaccagcaacttcacctctttctctttga |
46 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
32417209 |
atgaccagcaacttcacctctttctctttga |
32417179 |
T |
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