View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15764_high_11 (Length: 321)
Name: NF15764_high_11
Description: NF15764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15764_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 4 - 304
Target Start/End: Original strand, 45945532 - 45945814
Alignment:
| Q |
4 |
ggaccataactacgtgtaacacatgcaaaagcaaagatataataaaaaagacattttactcaaagacatgtacctcaaagatacgtagtttggagtaatt |
103 |
Q |
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| T |
45945532 |
ggaccataactacgtgtaacacatgcaaaagcaaagatataataaaaaagacattttactcaaagacatgtacctcgaagatacgtagtttggagtaatt |
45945631 |
T |
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| Q |
104 |
gatgacatcatatgccatagcaaattcggtttggttggctggagggtacacaggatcaatctccttaacaaagcaaccttgtgaaacaaggatcttacga |
203 |
Q |
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| T |
45945632 |
gatgacataatatgccatagcaaattcggtttggttggctggagggtacacaggagcaatctccttaacaatgcaaccttgtgaaacaaggatcttacga |
45945731 |
T |
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| Q |
204 |
tgttcctcgggaacatcaggttcttcgggaacatcaggtaagatagcaacaaccaaagggtacatggttttggtttttctcaatcctttggctaaaccaa |
303 |
Q |
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| T |
45945732 |
t------------------gttcttcaggaacatcaggtaagatagcaacaaccaaagggtacatggttttggtttttctcaatcctttggctaaaccaa |
45945813 |
T |
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Back To:
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 184
Target Start/End: Complemental strand, 55221583 - 55221483
Alignment:
| Q |
84 |
atacgtagtttggagtaattgatgacatcatatgccatagcaaattcggtttggttggctggagggtacacaggatcaatctccttaacaaagcaacctt |
183 |
Q |
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||||||||||||||||| |||||||||| ||| ||||||||||||| |||||| || |||||||| ||||| ||||||| |||||| |||||||| |
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| T |
55221583 |
atacgtagtttggagtagttgatgacataataagccatagcaaattgggtttgattcttaggagggtaaacaggtgcaatctctctaacaatgcaacctt |
55221484 |
T |
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| Q |
184 |
g |
184 |
Q |
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| T |
55221483 |
g |
55221483 |
T |
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