View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15764_high_12 (Length: 301)
Name: NF15764_high_12
Description: NF15764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15764_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 47928180 - 47928468
Alignment:
| Q |
1 |
tccactacccatttgtgttcctgtgtgaggaggttttgttttaaccgcataactaaacacttgtccaccccattgaatcaatgttgcactgtgtcttaaa |
100 |
Q |
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| T |
47928180 |
tccactacccatctgtgttcctgtgtgaggaggttttgttttgacctcataactaaacacttgtccaccccattgaatcaatgttgcactgtgtcttaaa |
47928279 |
T |
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| Q |
101 |
ttacctaataactctgctggccaataacctacagggatgttattcttcactttaagccaccagttttgggcattatcctaaatcaagccaacatattaag |
200 |
Q |
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| T |
47928280 |
ttacctaataactctgctggccaataacctacagggatgttattcttcactttaaaccaccagttttgggcattatcctaaatcaagccaacatattaag |
47928379 |
T |
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| Q |
201 |
agaaattaaaataacaattattttgtactacaattagcgcttctactttgtaattattacctggaatattccaacattgatttcatatt |
289 |
Q |
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| T |
47928380 |
agaaattaaaataacaatcattttgtactacaattagcgcttctactttgtaattattacctgaaatattccaacattgatttcatatt |
47928468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 47909252 - 47909472
Alignment:
| Q |
1 |
tccactacccatttgtgttcctgtgtgaggaggttttgttttaaccgcataactaaacacttgtccaccccattgaatcaatgttgcactgtgtcttaaa |
100 |
Q |
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| T |
47909252 |
tccactccccatttgtgttcctgtgtgaggaggttttgttttaaccgcataactaaatacttgtccaccccattgaaccgtcgttgcactgtgtttcaaa |
47909351 |
T |
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| Q |
101 |
ttacctaataactctgctggccaataacctacagggatgttattcttcactttaagccaccagttttgggcattatcctaaatcaagccaacatattaag |
200 |
Q |
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| T |
47909352 |
ttaccaaataactcagctggccaataacctactggtatattattcttaattttaagccaccagttttggttattatcctaaatcaaacaaacatattaag |
47909451 |
T |
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| Q |
201 |
agaaattaaaataacaattat |
221 |
Q |
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| T |
47909452 |
agaaattaaaattacaattat |
47909472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 47935614 - 47935779
Alignment:
| Q |
1 |
tccactacccatttgtgttcctgtgtgaggaggttttgttttaaccgcataactaaacacttgtccaccccattgaatcaatgttgcactgtgtcttaaa |
100 |
Q |
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|||||||||||| |||||||||||||||||||| | ||||| ||| |||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
47935614 |
tccactacccatctgtgttcctgtgtgaggaggggtagttttgacctgataactaaacacttgtcctccccattgaaccaatgttgcactgtgtcttaaa |
47935713 |
T |
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| Q |
101 |
ttacctaataactctgctggccaataacctacagggatgttattcttcactttaagccaccagttt |
166 |
Q |
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| T |
47935714 |
ttacccaataattccgctggccaataacctaccatgatggtatccttcactctaagccaccagttt |
47935779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 47946756 - 47946920
Alignment:
| Q |
1 |
tccactacccatttgtgttcctgtgtgaggaggttttgttttaaccgcataactaaacacttgtccaccccattgaatcaatgttgcactgtgtcttaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||| |||||||||||| ||| ||| |
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| T |
47946756 |
tccactacccatttgtgttcctgtgtgaggaggggttgttttcacattataactaaacacttgtccaccccattgaaccaatgttgcactatgttgtaag |
47946855 |
T |
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| Q |
101 |
ttacctaataactctgctggccaataacctacagggatgttattcttcactttaagccaccagtt |
165 |
Q |
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| T |
47946856 |
ttacccactatcgctgctggccaataacctacaatgattttatccttcattctaagccaccagtt |
47946920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 47918418 - 47918597
Alignment:
| Q |
1 |
tccactacccatttgtgttcctgtgtgaggaggttttgttttaaccgcataactaaacacttgtccaccccattgaatcaatgttgcactgtgtcttaaa |
100 |
Q |
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||||||||||||||||||||| |||||||||| |||| || ||| |||||||||||||||||||||||||||||| ||||| |||| | || |
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| T |
47918418 |
tccactacccatttgtgttccagtgtgaggagttttt---ttgacctcataactaaacacttgtccaccccattgaaccaatgatgcagaactttgtagg |
47918514 |
T |
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| Q |
101 |
ttacctaataactctgctggccaataacctacagggatgttattcttcactttaagccaccagttttgggcattatcctaaat |
183 |
Q |
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| T |
47918515 |
ttactcactaactcttttggccaataacctacaggaatgttattcttcactttaagccaccagtttccagaattatcctaaat |
47918597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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