View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15764_high_13 (Length: 295)

Name: NF15764_high_13
Description: NF15764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15764_high_13
NF15764_high_13
[»] chr1 (1 HSPs)
chr1 (16-295)||(2992971-2993254)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 2993254 - 2992971
Alignment:
Q  16 ctttgatggtgccgtgcggtaaagtttggtccatcccctctaatttacgtaagtgctcaatggaatgtagttcctatcattgctttggttttcttttgca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2993254 ctttgatggtgccgtgcggtaaagtttggtccatcccctctaatttacgtaagtgctcaatggaatgtagttcctatcattgctttggttttcttttgca 2993155  T
Q  116 gagtgtttttatgcattttaattggttggtcccgtaagttgtacttttatttgggtgcaccatctttgtttatatttagctccttca----taagtcata 211  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    |||||| ||    
T  2993154 gagtgtttttatgcattttaattggttggtcccgtgagttgtacttttatttgggtgcaccatctttgtttatatttagctccttcataattaagtctta 2993055  T
Q  212 gctagttagctactatcatgctggtttcttcattcattagtgacaaaatatgttcctcacgaactagttacggatccttagtac 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2993054 gctagttagctactatcatgctggtttcttcattcattagtgacaaaatatgttcctcacgaactagttacggatccttagtac 2992971  T

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